CsaV3_1G023080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G023080
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionATP binding protein
Locationchr1 : 13436310 .. 13437873 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTCCCAAGAAAGAATCTGTAAGTTCCAATTGCCATCAGTGAGGATTAAAATATTTTTACTTTCCTAAAGTATAGGTAATTGTCATGTTTTTAGAATGAAAGTTCTGAAAACTTCAACTAGGTTAGTAGGTATTTAGCCACAATCTGACGCGAGTGCTTAAACATGGAGATGTTGCTTGAGGAGGCCTAGTAAAAGAGTTATTCCTAATATGTTGGATTTCTTTTGTAGTCATTCAGGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGTTTGGGGTTCCTTTTCCATTCTTCCTACAAGTGGAAATACTGGGGGTAAGAAAAACATATGTTTTCCTTTTCCAAGATAAATGTTCCTCCTACACTTGACAAGTTTATTCTGTCTTATCTAAATATACGAGTTCTGTGTTTTTATTTCTTATCAACAAAATGAAATTAATGGTTGATTTTAAGGTTATTCTGATTGATTTGTAATATCAATAAAGATGAACAACAAAATATTCCTTTATAATTGTTCTTTCGAAGTTCAACAAAAAGATTCATAGTTATTAATCAACAAAAAGAGGTATGCACCAAATTCCGAGTTAGGATTTTTATCCCAACCAATCTCCCACTCAACAAGAAGAGAGAAAATAATAGAGCCCCCATGAATGGGCCTCTATTAATATATTTTAATAAAATTTTGGTTTTGGAGCAGTTTATCCCATGGATTGAGTATATTCCAGGAAGACAATAGTGAAGGAAAAGACACTCTAAAGCTTGAGACAAATGCAGAATCATCGAAGGTTTGATTTAGCTTTAAAAAATTTGCTTCAAAAGCATGTGTCATTGTACATCTTTATTAATGTGATTCTAAAAAATGCAACTTTTGCAGGAAGCCCAAAGGGACGAAGCTGTTGGGGCAAAGACTGAAAATAAATCTAAAATCCAGCTACAGAGGCAGAGAAATCTGTTCCCATAGTGAAAAAATATGTTGAAAATGTGCCTCCACAAAAAGCACCTGTAAGTTCGTCTTTAGTGAAGGTGGAACTTGGAACATGTTTGATTCGATTTCTGACCTTTGAATACCTTAAATTATTGAGTCAATCGATGATTTACCAAGTATCATGTCAAACCTTCGCAATGTTATTATTTCTACTTGTTAAGTTTTCTACATATTCTAAATCACAGGTCCCTAGACCGTGCCTCAAAATGATAACCAATTTTACGAGTTTTTGGTACTCGAATTACATTGGATAAGAATCATGTGTATTTTATGAACATCATGTCCTTGTTGGTTTCTAATGTTTGGAAATGAGGTTTCAACTTTGTTACTTCTGAGTATTCTTTCACTTAATTCTCAGTTTATATGGTCACTGTTGACAGACACTTTCCCTCCTATATCTCATTCTTTCATCCTTTTAATATTTCCTTTAGTTTGACAAGAAATTCCTCCCGACAATGAATTTGAAACGCGTATCAGACTTGAAGTTATCCCTGCAAATGAAATTGGGGTCACATTTGCAGACATTGGTGCTATGGATGAAATCAAAGAGTCCTTACAAGAATTAG

mRNA sequence

ATGGTTGTCCCAAGAAAGAATCTGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGTTTGGGGTTCCTTTTCCATTCTTCCTACAAGTGGAAATACTGGGGCTACAGAGGCAGAGAAATCTGTTCCCATAGTGAAAAAATATGTTGAAAATGTGCCTCCACAAAAAGCACCTTTTGACAAGAAATTCCTCCCGACAATGAATTTGAAACGCGTATCAGACTTGAAGTTATCCCTGCAAATGAAATTGGGGTCACATTTGCAGACATTGGTGCTATGGATGAAATCAAAGAGTCCTTACAAGAATTAG

Coding sequence (CDS)

ATGGTTGTCCCAAGAAAGAATCTGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGTTTGGGGTTCCTTTTCCATTCTTCCTACAAGTGGAAATACTGGGGCTACAGAGGCAGAGAAATCTGTTCCCATAGTGAAAAAATATGTTGAAAATGTGCCTCCACAAAAAGCACCTTTTGACAAGAAATTCCTCCCGACAATGAATTTGAAACGCGTATCAGACTTGAAGTTATCCCTGCAAATGAAATTGGGGTCACATTTGCAGACATTGGTGCTATGGATGAAATCAAAGAGTCCTTACAAGAATTAG

Protein sequence

MVVPRKNLRSISEVTLERMSSVWGSFSILPTSGNTGATEAEKSVPIVKKYVENVPPQKAPFDKKFLPTMNLKRVSDLKLSLQMKLGSHLQTLVLWMKSKSPYKN
Homology
[Close]
BLAST of CsaV3_1G023080 vs. NCBI nr
Match: KGN62185.1 (hypothetical protein Csa_2G317420 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 3.1e-22
Identity = 81/172 (47.09%), Postives = 82/172 (47.67%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT--------------------------------- 68
           RSISEVTLERMSSVWGSFSILPTSGNT                                 
Sbjct: 30  RSISEVTLERMSSVWGSFSILPTSGNTRVYSVLSKYTSSVFLFLINKKKLMAVFKVILID 89

Query: 69  ------------------------------------------------GATEAEKSVPIV 99
                                                            ATEAEKSVPIV
Sbjct: 90  FLSHGLGIFQEGNSEGKDTLKLETNAESSKEAQRDEAVGAKTESKSENPATEAEKSVPIV 149

[Close]
BLAST of CsaV3_1G023080 vs. NCBI nr
Match: XP_011650169.1 (PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 6.0e-10
Identity = 51/113 (45.13%), Postives = 51/113 (45.13%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT--------------------------------- 61
           RSISEVTLERMSSVWGSFSILPTSGNT                                 
Sbjct: 40  RSISEVTLERMSSVWGSFSILPTSGNTRGKKNILKFWFWSSLSHGLGIFQEGNSEGKDTL 99

[Close]
BLAST of CsaV3_1G023080 vs. NCBI nr
Match: ADN33778.1 (ATP binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT 36
           RSISEVTLERMSSVWGSFSILPTSGNT
Sbjct: 130 RSISEVTLERMSSVWGSFSILPTSGNT 156

[Close]
BLAST of CsaV3_1G023080 vs. NCBI nr
Match: XP_008437548.1 (PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT 36
           RSISEVTLERMSSVWGSFSILPTSGNT
Sbjct: 159 RSISEVTLERMSSVWGSFSILPTSGNT 185

[Close]
BLAST of CsaV3_1G023080 vs. NCBI nr
Match: XP_004145904.2 (PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus] >KGN49910.1 hypothetical protein Csa_5G139870 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT 36
           RSISEVTLERMSSVWGSFSILPTSGNT
Sbjct: 159 RSISEVTLERMSSVWGSFSILPTSGNT 185


HSP 2 Score: 51.2 bits (121), Expect = 2.5e-03
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 37  ATEAEKSVPIVKKYVENVPPQKAP-------FDKKFLP 68
           ATEAEKSVPIVKKYVENVPPQKAP       F+K+  P
Sbjct: 471 ATEAEKSVPIVKKYVENVPPQKAPEIPPDNEFEKRIRP 508

[Close]
BLAST of CsaV3_1G023080 vs. TrEMBL
Match: tr|A0A0A0LJV7|A0A0A0LJV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G317420 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 81/172 (47.09%), Postives = 82/172 (47.67%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT--------------------------------- 68
           RSISEVTLERMSSVWGSFSILPTSGNT                                 
Sbjct: 30  RSISEVTLERMSSVWGSFSILPTSGNTRVYSVLSKYTSSVFLFLINKKKLMAVFKVILID 89

Query: 69  ------------------------------------------------GATEAEKSVPIV 99
                                                            ATEAEKSVPIV
Sbjct: 90  FLSHGLGIFQEGNSEGKDTLKLETNAESSKEAQRDEAVGAKTESKSENPATEAEKSVPIV 149

[Close]
BLAST of CsaV3_1G023080 vs. TrEMBL
Match: tr|A0A1S3AUX0|A0A1S3AUX0_CUCME (uncharacterized protein LOC103482929 OS=Cucumis melo OX=3656 GN=LOC103482929 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT 36
           RSISEVTLERMSSVWGSFSILPTSGNT
Sbjct: 159 RSISEVTLERMSSVWGSFSILPTSGNT 185

[Close]
BLAST of CsaV3_1G023080 vs. TrEMBL
Match: tr|E5GBD7|E5GBD7_CUCME (ATP binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT 36
           RSISEVTLERMSSVWGSFSILPTSGNT
Sbjct: 130 RSISEVTLERMSSVWGSFSILPTSGNT 156

[Close]
BLAST of CsaV3_1G023080 vs. TrEMBL
Match: tr|A0A0A0KJL1|A0A0A0KJL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139870 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   RSISEVTLERMSSVWGSFSILPTSGNT 36
           RSISEVTLERMSSVWGSFSILPTSGNT
Sbjct: 159 RSISEVTLERMSSVWGSFSILPTSGNT 185


HSP 2 Score: 51.2 bits (121), Expect = 1.6e-03
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 37  ATEAEKSVPIVKKYVENVPPQKAP-------FDKKFLP 68
           ATEAEKSVPIVKKYVENVPPQKAP       F+K+  P
Sbjct: 471 ATEAEKSVPIVKKYVENVPPQKAPEIPPDNEFEKRIRP 508

The following BLAST results are available for this feature:
BLAST of CsaV3_1G023080 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62185.13.1e-2247.09hypothetical protein Csa_2G317420 [Cucumis sativus][more]
XP_011650169.16.0e-1045.13PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-... [more]
ADN33778.11.0e-04100.00ATP binding protein [Cucumis melo subsp. melo][more]
XP_008437548.11.0e-04100.00PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo][more]
XP_004145904.21.0e-04100.00PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus] ... [more]
BLAST of CsaV3_1G023080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G023080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G023080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJV7|A0A0A0LJV7_CUCSA2.0e-2247.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G317420 PE=3 SV=1[more]
tr|A0A1S3AUX0|A0A1S3AUX0_CUCME6.6e-05100.00uncharacterized protein LOC103482929 OS=Cucumis melo OX=3656 GN=LOC103482929 PE=... [more]
tr|E5GBD7|E5GBD7_CUCME6.6e-05100.00ATP binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A0A0KJL1|A0A0A0KJL1_CUCSA6.6e-05100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139870 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G023080.1CsaV3_1G023080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G023080Cucumber (Gy14) v2cgybcucB001
CsaV3_1G023080Cucumber (Gy14) v2cgybcucB055
CsaV3_1G023080Cucumber (Gy14) v1cgycucB578
CsaV3_1G023080Wild cucumber (PI 183967)cpicucB069