CsaV3_1G019640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G019640
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTranscription factor like
Locationchr1 : 12380301 .. 12381352 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGGTCTTTGACTTCCTCGTTTGAAGTTGATTCTTCCAAGAAGGCTATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGTTGTTGATTCACTACTTCATGTTCTTCCTTTCAATTTTCTCATGAATTAATGGGTTTCTGTTTCTTTCTGCTCCGAATTTTCGTTGAACTTTGGATGTTCCCTGCAATTAATCAAATTAAATGACAAATGGATTTGTGATTCATCTTCCATTTTAGGATTCTGGCGAATAGACAATCTGCTGCACGATCCAAGGAGAGAAAAATACGTTACACTAATGAATTAGAGAAGAAGGTGCAAATGCTTCAATCAGAAGCGACTTCCCTTTCTGCTCAGGTCACTGTGTTACAGGTATGGCATCTATATTTTTGTAGCTTATGAAGAAGGATAATGAACAGGTGGACTGAACTATAGACAAAACATGAATCTTTTATATATCTTGCTTTACAAGTCTCATGGGTGGCCTGTAGCTATCATTTGGACTTGTTATGGTGATGGAAGAAAGAATTGGTAACTTTTGACCTTTCAAATTTGTTTGTTTTTTCTCCCTCACTTTCAAGACTTATTGTACAGATAATGAGGGCTTTGTCAGTCTTGATGACTAAAAAACAATGGAGAAAAGTGTTTTTTGTTTTTGCTTTTGAGTTGAGTGAGGGTATTTCAACTTTTTGGTTTGTGTTCTTAGATGAGAGGATATGAACGACTTCTTGATATGTTTCAACCGGTTGAGCTATGCTTAATAATCTACTTTGGTGCAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGATTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGGTACGTGTGGTTCTTCATTCATAGAAAAATGCCGGCGTTTTTGGTTTCATTTTTCATGAGGGCTTCATTTACACTACACATGGAGATGTTAACTATTCAAATGTTTGGTGCTTTTACAGCTTTGAATGAGACATTGAGGAGGAAGTACAGCGACTTAAGATAG

mRNA sequence

ATGGATGGGTCTTTGACTTCCTCGTTTGAAGTTGATTCTTCCAAGAAGGCTATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCGAATAGACAATCTGCTGCACGATCCAAGGAGAGAAAAATACGTTACACTAATGAATTAGAGAAGAAGGTGCAAATGCTTCAATCAGAAGCGACTTCCCTTTCTGCTCAGGTCACTGTGTTACAGATGAGAGGATATGAACGACTTCTTGATATGTTTCAACCGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGATTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACATTGAGGAGGAAGTACAGCGACTTAAGATAG

Coding sequence (CDS)

ATGGATGGGTCTTTGACTTCCTCGTTTGAAGTTGATTCTTCCAAGAAGGCTATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCGAATAGACAATCTGCTGCACGATCCAAGGAGAGAAAAATACGTTACACTAATGAATTAGAGAAGAAGGTGCAAATGCTTCAATCAGAAGCGACTTCCCTTTCTGCTCAGGTCACTGTGTTACAGATGAGAGGATATGAACGACTTCTTGATATGTTTCAACCGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGATTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACATTGAGGAGGAAGTACAGCGACTTAAGATAG

Protein sequence

MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLRRKYSDLR
Homology
[Close]
BLAST of CsaV3_1G019640 vs. NCBI nr
Match: XP_004141014.1 (PREDICTED: transcription factor VIP1 [Cucumis sativus] >KGN46149.1 hypothetical protein Csa_6G057150 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 116/135 (85.93%), Postives = 118/135 (87.41%), Query Frame = 0 

Query: 1   MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK 60
           MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK
Sbjct: 177 MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK 236

Query: 61  KVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLR 120
           KVQMLQSEATSLSAQVTVLQ             RDTTGLTTENRELKLRLQAMEQQAHLR
Sbjct: 237 KVQMLQSEATSLSAQVTVLQ-------------RDTTGLTTENRELKLRLQAMEQQAHLR 296

Query: 121 DALNETLRRKYSDLR 136
           DALNETLR +   L+
Sbjct: 297 DALNETLREEVQRLK 298

[Close]
BLAST of CsaV3_1G019640 vs. NCBI nr
Match: XP_008441523.1 (PREDICTED: transcription factor VIP1-like [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 115/141 (81.56%), Postives = 118/141 (83.69%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGSLTSSFE      +DSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY
Sbjct: 177 MDGSLTSSFEGDSTVVIDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 236

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQMLQSEATSLSAQVTVLQ             RDTTGLTTENRELKLRLQAME
Sbjct: 237 TNELEKKVQMLQSEATSLSAQVTVLQ-------------RDTTGLTTENRELKLRLQAME 296

Query: 121 QQAHLRDALNETLRRKYSDLR 136
           QQAHLRDALNETLR +   L+
Sbjct: 297 QQAHLRDALNETLREEVQRLK 304

[Close]
BLAST of CsaV3_1G019640 vs. NCBI nr
Match: XP_022768008.1 (transcription factor VIP1-like [Durio zibethinus])

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 101/134 (75.37%), Postives = 109/134 (81.34%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGS T+SFE      VD  KKAMAPD+LAELAL+DPKRAKRILANRQSAARSKERKIRY
Sbjct: 140 MDGSTTASFEVESLMTVDGVKKAMAPDRLAELALIDPKRAKRILANRQSAARSKERKIRY 199

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQ LQ+EAT+LSAQVT+LQ             RDTTGLTTEN+ELKLRLQAME
Sbjct: 200 TNELEKKVQTLQTEATNLSAQVTMLQ-------------RDTTGLTTENKELKLRLQAME 259

Query: 121 QQAHLRDALNETLR 129
           Q+A LRDALNE LR
Sbjct: 260 QEAQLRDALNEALR 260

[Close]
BLAST of CsaV3_1G019640 vs. NCBI nr
Match: XP_016693775.1 (PREDICTED: transcription factor VIP1-like [Gossypium hirsutum])

HSP 1 Score: 167.2 bits (422), Expect = 4.0e-38
Identity = 101/141 (71.63%), Postives = 111/141 (78.72%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGS T+SF+      VD  KK MAPD+LAELAL+DPKRAKRILANRQSAARSKERKIRY
Sbjct: 135 MDGSTTASFDVESLMAVDGVKKTMAPDRLAELALIDPKRAKRILANRQSAARSKERKIRY 194

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQ LQ+EAT+LSAQVT+LQ             RDTTGLTTEN+ELKLRLQAME
Sbjct: 195 TNELEKKVQTLQTEATNLSAQVTMLQ-------------RDTTGLTTENKELKLRLQAME 254

Query: 121 QQAHLRDALNETLRRKYSDLR 136
           QQA LRDALNE L+ +   LR
Sbjct: 255 QQAQLRDALNEKLKEEVQRLR 262

[Close]
BLAST of CsaV3_1G019640 vs. NCBI nr
Match: XP_016742223.1 (PREDICTED: transcription factor VIP1-like [Gossypium hirsutum])

HSP 1 Score: 167.2 bits (422), Expect = 4.0e-38
Identity = 101/141 (71.63%), Postives = 111/141 (78.72%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGS T+SF+      VD  KK MAPD+LAELAL+DPKRAKRILANRQSAARSKERKIRY
Sbjct: 135 MDGSTTASFDVESLMAVDGVKKTMAPDRLAELALIDPKRAKRILANRQSAARSKERKIRY 194

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQ LQ+EAT+LSAQVT+LQ             RDTTGLTTEN+ELKLRLQAME
Sbjct: 195 TNELEKKVQTLQTEATNLSAQVTMLQ-------------RDTTGLTTENKELKLRLQAME 254

Query: 121 QQAHLRDALNETLRRKYSDLR 136
           QQA LRDALNE L+ +   LR
Sbjct: 255 QQAQLRDALNEKLKEEVQRLR 262

[Close]
BLAST of CsaV3_1G019640 vs. TAIR10
Match: AT2G40620.1 (Basic-leucine zipper (bZIP) transcription factor family protein)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-33
Identity = 85/135 (62.96%), Postives = 103/135 (76.30%), Query Frame = 0 

Query: 1   MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK 60
           +DGS  S+ E   +KKAMAPDKLAEL ++DPKRAKRI+ANRQSAARSKERK RY  ELE+
Sbjct: 121 VDGS--STLESIEAKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELER 180

Query: 61  KVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLR 120
           KVQ LQ+EAT+LSAQ+++ Q             RDTTGL++EN ELKLRLQ MEQQA LR
Sbjct: 181 KVQTLQTEATTLSAQLSLFQ-------------RDTTGLSSENTELKLRLQVMEQQAKLR 240

Query: 121 DALNETLRRKYSDLR 136
           DALNE L+++   L+
Sbjct: 241 DALNEQLKKEVERLK 240

[Close]
BLAST of CsaV3_1G019640 vs. TAIR10
Match: AT1G43700.1 (VIRE2-interacting protein 1)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-32
Identity = 89/148 (60.14%), Postives = 105/148 (70.95%), Query Frame = 0 

Query: 1   MDGSLTS-SFEV----------DSSKK--AMAPDKLAELALMDPKRAKRILANRQSAARS 60
           MDG ++S SF +          DS KK   M  D+LAELAL+DPKRAKRILANRQSAARS
Sbjct: 152 MDGEMSSASFNIESILASVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARS 211

Query: 61  KERKIRYTNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELK 120
           KERKIRYT ELE+KVQ LQ+EAT+LSAQVT+LQ             R T+ L TEN+ LK
Sbjct: 212 KERKIRYTGELERKVQTLQNEATTLSAQVTMLQ-------------RGTSELNTENKHLK 271

Query: 121 LRLQAMEQQAHLRDALNETLRRKYSDLR 136
           +RLQA+EQQA LRDALNE LR + + L+
Sbjct: 272 MRLQALEQQAELRDALNEALRDELNRLK 286

[Close]
BLAST of CsaV3_1G019640 vs. TAIR10
Match: AT2G31370.3 (Basic-leucine zipper (bZIP) transcription factor family protein)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-31
Identity = 87/144 (60.42%), Postives = 100/144 (69.44%), Query Frame = 0 

Query: 1   MDGS------LTSSFEVDS---SKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERK 60
           MDGS      L S  E DS   +KK+M+  KLAELAL+DPKRAKRI ANRQSAARSKERK
Sbjct: 163 MDGSMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERK 222

Query: 61  IRYTNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQ 120
            RY  ELE+KVQ LQ+EAT+LSAQ+T+LQ             RDT GLT EN ELKLRLQ
Sbjct: 223 TRYIFELERKVQTLQTEATTLSAQLTLLQ-------------RDTNGLTVENNELKLRLQ 282

Query: 121 AMEQQAHLRDALNETLRRKYSDLR 136
            MEQQ HL+D LNE L+ +   L+
Sbjct: 283 TMEQQVHLQDELNEALKEEIQHLK 293

[Close]
BLAST of CsaV3_1G019640 vs. TAIR10
Match: AT1G06070.1 (Basic-leucine zipper (bZIP) transcription factor family protein)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-30
Identity = 83/145 (57.24%), Postives = 99/145 (68.28%), Query Frame = 0 

Query: 1   MDGSLTSSFEV----------DSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKER 60
           MDGS T   E+            SKKA++  KL+ELAL+DPKRAKRI ANRQSAARSKER
Sbjct: 171 MDGSTTIKPEMLMSGNEDVSGVDSKKAISAAKLSELALIDPKRAKRIWANRQSAARSKER 230

Query: 61  KIRYTNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRL 120
           K+RY  ELE+KVQ LQ+EATSLSAQ+T+LQ             RDT GL  EN ELKLR+
Sbjct: 231 KMRYIAELERKVQTLQTEATSLSAQLTLLQ-------------RDTNGLGVENNELKLRV 290

Query: 121 QAMEQQAHLRDALNETLRRKYSDLR 136
           Q MEQQ HL+DALN+ L+ +   L+
Sbjct: 291 QTMEQQVHLQDALNDALKEEVQHLK 302

[Close]
BLAST of CsaV3_1G019640 vs. TAIR10
Match: AT4G38900.1 (Basic-leucine zipper (bZIP) transcription factor family protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.5e-28
Identity = 79/133 (59.40%), Postives = 89/133 (66.92%), Query Frame = 0 

Query: 9   FEVDSSKKAMAPDKLAELALMDPKRAK------RILANRQSAARSKERKIRYTNELEKKV 68
           F     KK MA DKLAE+A+ DPKR K      RILANRQSAARSKERK+RY  ELE KV
Sbjct: 373 FTAAEMKKIMANDKLAEMAMSDPKRVKRNDPLFRILANRQSAARSKERKMRYIVELEHKV 432

Query: 69  QMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLRDA 128
           Q LQ+EAT+LSAQ+T+LQ             RD  GLT +N ELK RLQAMEQQA LRDA
Sbjct: 433 QTLQTEATTLSAQLTLLQ-------------RDMMGLTNQNNELKFRLQAMEQQARLRDA 492

Query: 129 LNETLRRKYSDLR 136
           LNE L  +   L+
Sbjct: 493 LNEALNGEVQRLK 492

[Close]
BLAST of CsaV3_1G019640 vs. Swiss-Prot
Match: sp|O22873|BZP18_ARATH (bZIP transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=BZIP18 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-32
Identity = 85/135 (62.96%), Postives = 103/135 (76.30%), Query Frame = 0 

Query: 1   MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK 60
           +DGS  S+ E   +KKAMAPDKLAEL ++DPKRAKRI+ANRQSAARSKERK RY  ELE+
Sbjct: 121 VDGS--STLESIEAKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELER 180

Query: 61  KVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLR 120
           KVQ LQ+EAT+LSAQ+++ Q             RDTTGL++EN ELKLRLQ MEQQA LR
Sbjct: 181 KVQTLQTEATTLSAQLSLFQ-------------RDTTGLSSENTELKLRLQVMEQQAKLR 240

Query: 121 DALNETLRRKYSDLR 136
           DALNE L+++   L+
Sbjct: 241 DALNEQLKKEVERLK 240

[Close]
BLAST of CsaV3_1G019640 vs. Swiss-Prot
Match: sp|Q6S4P4|RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-31
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0 

Query: 10  EVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEA 69
           EV  +KKAM P++L+ELA +DPKRAKRILANRQSAARSKERK RY  ELE+KVQ LQ+EA
Sbjct: 112 EVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEA 171

Query: 70  TSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLRR 129
           T+LSAQ+T+ Q             RDTTGL+ EN ELK+RLQAMEQQA LRDALN+ L++
Sbjct: 172 TTLSAQLTLFQ-------------RDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQ 224

Query: 130 KYSDLR 136
           +   L+
Sbjct: 232 ELERLK 224

[Close]
BLAST of CsaV3_1G019640 vs. Swiss-Prot
Match: sp|Q9MA75|VIP1_ARATH (Transcription factor VIP1 OS=Arabidopsis thaliana OX=3702 GN=VIP1 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.5e-31
Identity = 89/148 (60.14%), Postives = 105/148 (70.95%), Query Frame = 0 

Query: 1   MDGSLTS-SFEV----------DSSKK--AMAPDKLAELALMDPKRAKRILANRQSAARS 60
           MDG ++S SF +          DS KK   M  D+LAELAL+DPKRAKRILANRQSAARS
Sbjct: 152 MDGEMSSASFNIESILASVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARS 211

Query: 61  KERKIRYTNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELK 120
           KERKIRYT ELE+KVQ LQ+EAT+LSAQVT+LQ             R T+ L TEN+ LK
Sbjct: 212 KERKIRYTGELERKVQTLQNEATTLSAQVTMLQ-------------RGTSELNTENKHLK 271

Query: 121 LRLQAMEQQAHLRDALNETLRRKYSDLR 136
           +RLQA+EQQA LRDALNE LR + + L+
Sbjct: 272 MRLQALEQQAELRDALNEALRDELNRLK 286

[Close]
BLAST of CsaV3_1G019640 vs. Swiss-Prot
Match: sp|Q04088|POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-30
Identity = 87/144 (60.42%), Postives = 100/144 (69.44%), Query Frame = 0 

Query: 1   MDGS------LTSSFEVDS---SKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERK 60
           MDGS      L S  E DS   +KK+M+  KLAELAL+DPKRAKRI ANRQSAARSKERK
Sbjct: 163 MDGSMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERK 222

Query: 61  IRYTNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQ 120
            RY  ELE+KVQ LQ+EAT+LSAQ+T+LQ             RDT GLT EN ELKLRLQ
Sbjct: 223 TRYIFELERKVQTLQTEATTLSAQLTLLQ-------------RDTNGLTVENNELKLRLQ 282

Query: 121 AMEQQAHLRDALNETLRRKYSDLR 136
            MEQQ HL+D LNE L+ +   L+
Sbjct: 283 TMEQQVHLQDELNEALKEEIQHLK 293

[Close]
BLAST of CsaV3_1G019640 vs. Swiss-Prot
Match: sp|Q69IL4|RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica OX=39947 GN=RF2a PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-20
Identity = 66/130 (50.77%), Postives = 81/130 (62.31%), Query Frame = 0 

Query: 6   TSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQML 65
           T       +KKA++  KLAELAL+DPKRAKRI ANRQSAARSKERK+RY  ELE+KVQ L
Sbjct: 157 TEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTL 216

Query: 66  QSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLRDALNE 125
           Q+EAT+LSAQ+ +                             LRLQ MEQQ HL+DALN+
Sbjct: 217 QTEATTLSAQLAL-------------XXXXXXXXXXXXXXXXLRLQTMEQQVHLQDALND 273

Query: 126 TLRRKYSDLR 136
           TL+ +   L+
Sbjct: 277 TLKSEVQRLK 273

[Close]
BLAST of CsaV3_1G019640 vs. TrEMBL
Match: tr|A0A0A0KBC6|A0A0A0KBC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057150 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.1e-47
Identity = 116/135 (85.93%), Postives = 118/135 (87.41%), Query Frame = 0 

Query: 1   MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK 60
           MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK
Sbjct: 177 MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEK 236

Query: 61  KVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAMEQQAHLR 120
           KVQMLQSEATSLSAQVTVLQ             RDTTGLTTENRELKLRLQAMEQQAHLR
Sbjct: 237 KVQMLQSEATSLSAQVTVLQ-------------RDTTGLTTENRELKLRLQAMEQQAHLR 296

Query: 121 DALNETLRRKYSDLR 136
           DALNETLR +   L+
Sbjct: 297 DALNETLREEVQRLK 298

[Close]
BLAST of CsaV3_1G019640 vs. TrEMBL
Match: tr|A0A1S3B3P0|A0A1S3B3P0_CUCME (transcription factor VIP1-like OS=Cucumis melo OX=3656 GN=LOC103485625 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-45
Identity = 115/141 (81.56%), Postives = 118/141 (83.69%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGSLTSSFE      +DSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY
Sbjct: 177 MDGSLTSSFEGDSTVVIDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 236

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQMLQSEATSLSAQVTVLQ             RDTTGLTTENRELKLRLQAME
Sbjct: 237 TNELEKKVQMLQSEATSLSAQVTVLQ-------------RDTTGLTTENRELKLRLQAME 296

Query: 121 QQAHLRDALNETLRRKYSDLR 136
           QQAHLRDALNETLR +   L+
Sbjct: 297 QQAHLRDALNETLREEVQRLK 304

[Close]
BLAST of CsaV3_1G019640 vs. TrEMBL
Match: tr|A0A1U8JU54|A0A1U8JU54_GOSHI (transcription factor VIP1-like OS=Gossypium hirsutum OX=3635 GN=LOC107910451 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.6e-38
Identity = 101/141 (71.63%), Postives = 111/141 (78.72%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGS T+SF+      VD  KK MAPD+LAELAL+DPKRAKRILANRQSAARSKERKIRY
Sbjct: 135 MDGSTTASFDVESLMAVDGVKKTMAPDRLAELALIDPKRAKRILANRQSAARSKERKIRY 194

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQ LQ+EAT+LSAQVT+LQ             RDTTGLTTEN+ELKLRLQAME
Sbjct: 195 TNELEKKVQTLQTEATNLSAQVTMLQ-------------RDTTGLTTENKELKLRLQAME 254

Query: 121 QQAHLRDALNETLRRKYSDLR 136
           QQA LRDALNE L+ +   LR
Sbjct: 255 QQAQLRDALNEKLKEEVQRLR 262

[Close]
BLAST of CsaV3_1G019640 vs. TrEMBL
Match: tr|A0A1U8NVW3|A0A1U8NVW3_GOSHI (transcription factor VIP1-like OS=Gossypium hirsutum OX=3635 GN=LOC107951626 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.6e-38
Identity = 101/141 (71.63%), Postives = 111/141 (78.72%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGS T+SF+      VD  KK MAPD+LAELAL+DPKRAKRILANRQSAARSKERKIRY
Sbjct: 135 MDGSTTASFDVESLMAVDGVKKTMAPDRLAELALIDPKRAKRILANRQSAARSKERKIRY 194

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQ LQ+EAT+LSAQVT+LQ             RDTTGLTTEN+ELKLRLQAME
Sbjct: 195 TNELEKKVQTLQTEATNLSAQVTMLQ-------------RDTTGLTTENKELKLRLQAME 254

Query: 121 QQAHLRDALNETLRRKYSDLR 136
           QQA LRDALNE L+ +   LR
Sbjct: 255 QQAQLRDALNEKLKEEVQRLR 262

[Close]
BLAST of CsaV3_1G019640 vs. TrEMBL
Match: tr|A0A2P5S6X7|A0A2P5S6X7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD08206 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.6e-38
Identity = 101/141 (71.63%), Postives = 111/141 (78.72%), Query Frame = 0 

Query: 1   MDGSLTSSFE------VDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRY 60
           MDGS T+SF+      VD  KK MAPD+LAELAL+DPKRAKRILANRQSAARSKERKIRY
Sbjct: 135 MDGSTTASFDVESLMAVDGVKKTMAPDRLAELALIDPKRAKRILANRQSAARSKERKIRY 194

Query: 61  TNELEKKVQMLQSEATSLSAQVTVLQMRGYERLLDMFQPRDTTGLTTENRELKLRLQAME 120
           TNELEKKVQ LQ+EAT+LSAQVT+LQ             RDTTGLTTEN+ELKLRLQAME
Sbjct: 195 TNELEKKVQTLQTEATNLSAQVTMLQ-------------RDTTGLTTENKELKLRLQAME 254

Query: 121 QQAHLRDALNETLRRKYSDLR 136
           QQA LRDALNE L+ +   LR
Sbjct: 255 QQAQLRDALNEKLKEEVQRLR 262

The following BLAST results are available for this feature:
BLAST of CsaV3_1G019640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141014.11.6e-4785.93PREDICTED: transcription factor VIP1 [Cucumis sativus] >KGN46149.1 hypothetical ... [more]
XP_008441523.12.0e-4581.56PREDICTED: transcription factor VIP1-like [Cucumis melo][more]
XP_022768008.12.3e-3875.37transcription factor VIP1-like [Durio zibethinus][more]
XP_016693775.14.0e-3871.63PREDICTED: transcription factor VIP1-like [Gossypium hirsutum][more]
XP_016742223.14.0e-3871.63PREDICTED: transcription factor VIP1-like [Gossypium hirsutum][more]
BLAST of CsaV3_1G019640 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40620.14.7e-3362.96Basic-leucine zipper (bZIP) transcription factor family protein[more]
AT1G43700.13.0e-3260.14VIRE2-interacting protein 1[more]
AT2G31370.32.0e-3160.42Basic-leucine zipper (bZIP) transcription factor family protein[more]
AT1G06070.12.2e-3057.24Basic-leucine zipper (bZIP) transcription factor family protein[more]
AT4G38900.13.5e-2859.40Basic-leucine zipper (bZIP) transcription factor family protein[more]
BLAST of CsaV3_1G019640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22873|BZP18_ARATH8.5e-3262.96bZIP transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=BZIP18 PE=1 SV=1[more]
sp|Q6S4P4|RF2B_ORYSJ1.9e-3163.49Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 ... [more]
sp|Q9MA75|VIP1_ARATH5.5e-3160.14Transcription factor VIP1 OS=Arabidopsis thaliana OX=3702 GN=VIP1 PE=1 SV=1[more]
sp|Q04088|POF21_ARATH3.6e-3060.42Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 P... [more]
sp|Q69IL4|RF2A_ORYSJ2.0e-2050.77Transcription factor RF2a OS=Oryza sativa subsp. japonica OX=39947 GN=RF2a PE=1 ... [more]
BLAST of CsaV3_1G019640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBC6|A0A0A0KBC6_CUCSA1.1e-4785.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057150 PE=4 SV=1[more]
tr|A0A1S3B3P0|A0A1S3B3P0_CUCME1.3e-4581.56transcription factor VIP1-like OS=Cucumis melo OX=3656 GN=LOC103485625 PE=4 SV=1[more]
tr|A0A1U8JU54|A0A1U8JU54_GOSHI2.6e-3871.63transcription factor VIP1-like OS=Gossypium hirsutum OX=3635 GN=LOC107910451 PE=... [more]
tr|A0A1U8NVW3|A0A1U8NVW3_GOSHI2.6e-3871.63transcription factor VIP1-like OS=Gossypium hirsutum OX=3635 GN=LOC107951626 PE=... [more]
tr|A0A2P5S6X7|A0A2P5S6X7_GOSBA2.6e-3871.63Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD08206 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045596 negative regulation of cell differentiation
biological_process GO:0009652 thigmotropism
biological_process GO:0006810 transport
biological_process GO:0008272 sulfate transport
biological_process GO:0051170 nuclear import
biological_process GO:0007231 osmosensory signaling pathway
biological_process GO:0009294 DNA mediated transformation
biological_process GO:0009970 cellular response to sulfate starvation
biological_process GO:0033554 cellular response to stress
biological_process GO:0007154 cell communication
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0051019 mitogen-activated protein kinase binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0043621 protein self-association
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G019640.1CsaV3_1G019640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..116
NoneNo IPR availableCOILSCoilCoilcoord: 55..75
NoneNo IPR availableGENE3DG3DSA:1.20.5.170coord: 32..82
e-value: 1.1E-11
score: 46.5
NoneNo IPR availablePANTHERPTHR13690FAMILY NOT NAMEDcoord: 1..132
NoneNo IPR availablePANTHERPTHR13690:SF86TRANSCRIPTION FACTOR VIP1coord: 1..132
NoneNo IPR availableCDDcd14703bZIP_plant_RF2coord: 33..82
e-value: 2.05396E-15
score: 65.2888
NoneNo IPR availableSUPERFAMILYSSF57959Leucine zipper domaincoord: 32..80
IPR004827Basic-leucine zipper domainSMARTSM00338brlzneucoord: 28..93
e-value: 3.2E-11
score: 53.3
IPR004827Basic-leucine zipper domainPFAMPF00170bZIP_1coord: 32..77
e-value: 1.4E-8
score: 34.6
IPR004827Basic-leucine zipper domainPROSITEPS50217BZIPcoord: 30..80
score: 10.036

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G019640CSPI06G04970Wild cucumber (PI 183967)cpicucB315
CsaV3_1G019640Cucsa.363640Cucumber (Gy14) v1cgycucB551
CsaV3_1G019640CsGy6G004900Cucumber (Gy14) v2cgybcucB252
CsaV3_1G019640Cla013824Watermelon (97103) v1cucwmB010
CsaV3_1G019640MELO3C008356Melon (DHL92) v3.5.1cucmeB065
CsaV3_1G019640ClCG08G006930Watermelon (Charleston Gray)cucwcgB098
CsaV3_1G019640Lsi08G005500Bottle gourd (USVL1VR-Ls)cuclsiB094
CsaV3_1G019640MELO3C008356.2Melon (DHL92) v3.6.1cucmedB061
CsaV3_1G019640Cla97C08G149620Watermelon (97103) v2cucwmbB086
CsaV3_1G019640Bhi04G001371Wax gourdcucwgoB019
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_1G019640CsaV3_6G005320Cucumber (Chinese Long) v3cuccucB050
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G019640Silver-seed gourdcarcucB0043
CsaV3_1G019640Cucurbita moschata (Rifu)cmocucB0319
CsaV3_1G019640Cucumber (Gy14) v2cgybcucB202
CsaV3_1G019640Cucurbita maxima (Rimu)cmacucB0325
CsaV3_1G019640Bottle gourd (USVL1VR-Ls)cuclsiB080
CsaV3_1G019640Watermelon (97103) v2cucwmbB080