CsaV3_1G018400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G018400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr1 : 12016994 .. 12017354 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATCAATTTAAGGATTGTCGTAAGCCAAAGAATTTTCAGCACAAAAATGCTCATGCTTCTATCACAGTTATTGATGAAGTATTAGATGGTGTTGCAGATCTTAACCTTTGTGCAGTCATTTTAGAGTGCAACTTAGTGGGAAACTCCAAGGAATGGTGTGTAGATACTGGTGCTACTCCTCATATTTGTGCCAACAAGAATATGTTCTCATCATATGTGTTAGTCTCTAATGGAGAACAATTATTTATGGGTAACTCTTCTACTTCAAAGGTTGAGGGACAAGGGAAAATTATCCTTAAATTGACTTCTAACAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTAGCATTC

mRNA sequence

ATGGGAGATCAATTTAAGGATTGTCGTAAGCCAAAGAATTTTCAGCACAAAAATGCTCATGCTTCTATCACAGTTATTGATGAAGTATTAGATGGTGTTGCAGATCTTAACCTTTGTGCAGTCATTTTAGAGTGCAACTTAGTGGGAAACTCCAAGGAATGGTGTGTAGATACTGGTGCTACTCCTCATATTTGTGCCAACAAGAATATGTTCTCATCATATGTGTTAGTCTCTAATGGAGAACAATTATTTATGGGTAACTCTTCTACTTCAAAGGTTGAGGGACAAGGGAAAATTATCCTTAAATTGACTTCTAACAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTAGCATTC

Coding sequence (CDS)

ATGGGAGATCAATTTAAGGATTGTCGTAAGCCAAAGAATTTTCAGCACAAAAATGCTCATGCTTCTATCACAGTTATTGATGAAGTATTAGATGGTGTTGCAGATCTTAACCTTTGTGCAGTCATTTTAGAGTGCAACTTAGTGGGAAACTCCAAGGAATGGTGTGTAGATACTGGTGCTACTCCTCATATTTGTGCCAACAAGAATATGTTCTCATCATATGTGTTAGTCTCTAATGGAGAACAATTATTTATGGGTAACTCTTCTACTTCAAAGGTTGAGGGACAAGGGAAAATTATCCTTAAATTGACTTCTAACAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTAGCATTC

Protein sequence

MGDQFKDCRKPKNFQHKNAHASITVIDEVLDGVADLNLCAVILECNLVGNSKEWCVDTGATPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSIX
Homology
[Close]
BLAST of CsaV3_1G018400 vs. NCBI nr
Match: XP_009350471.1 (PREDICTED: uncharacterized protein LOC103941999 [Pyrus x bretschneideri])

HSP 1 Score: 136.3 bits (342), Expect = 6.7e-29
Identity = 68/122 (55.74%), Postives = 92/122 (75.41%), Query Frame = 0 

Query: 2   GDQFKDCRKPK---NFQHKNAHASITVIDEVLDGVADLNLCAVILECNLVGNSKEWCVDT 61
           G + ++CR  K   N + K+    IT  + +   ++D+NL AV+ E N+VGN+KEW VDT
Sbjct: 270 GHRARECRNRKGQDNSKKKSNEVHITEEERLSKEISDINLAAVVSEVNMVGNTKEWWVDT 329

Query: 62  GATPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVP 121
           GAT HIC+++ MF+ Y  V++GEQLFMGNSSTSKV+G GK+ILK+TS KELTLN+VLHVP
Sbjct: 330 GATRHICSDRKMFTIYQEVTHGEQLFMGNSSTSKVQGLGKVILKMTSRKELTLNDVLHVP 389

[Close]
BLAST of CsaV3_1G018400 vs. NCBI nr
Match: KZV24436.1 (hypothetical protein F511_24231 [Dorcoceras hygrometricum])

HSP 1 Score: 133.3 bits (334), Expect = 5.7e-28
Identity = 62/121 (51.24%), Postives = 90/121 (74.38%), Query Frame = 0 

Query: 1   MGDQFKDCRKPKNFQHKNAHASITVIDEVLDGVADLNLCAVILECNLVG-NSKEWCVDTG 60
           MG +  DC+KPK  +  N       +D++   V+++NLCAV+ E NL+G N +EW +DTG
Sbjct: 134 MGHKASDCKKPKRAREAN------TVDDISHDVSNINLCAVVFEVNLIGSNPREWWIDTG 193

Query: 61  ATPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPS 120
           AT H+C++K MF++     NGE+L+MGNS+TS+++GQGK++LK+TS KELTLNNVL+VP 
Sbjct: 194 ATRHVCSDKEMFATLQESENGEKLYMGNSATSEIKGQGKVVLKMTSGKELTLNNVLYVPD 248

[Close]
BLAST of CsaV3_1G018400 vs. NCBI nr
Match: AAK70407.1 (pol polyprotein [Citrus x paradisi])

HSP 1 Score: 132.9 bits (333), Expect = 7.4e-28
Identity = 65/121 (53.72%), Postives = 89/121 (73.55%), Query Frame = 0 

Query: 1   MGDQFKDCRKPKNFQHKNAHASITVIDEVLDGVADLNLCAVILECNLVG-NSKEWCVDTG 60
           MG +  DCR PK  +  N      V++ +   V+D+NL AV+LE N+VG N +EW +DTG
Sbjct: 277 MGHKASDCRLPKKKREAN------VVENITQHVSDINLSAVVLEVNMVGSNPREWWIDTG 336

Query: 61  ATPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPS 120
           AT H+C++K +F+S+   SN E+LFMGNS+TS++EGQGK+ LK+TS KELTLNNVL+VP 
Sbjct: 337 ATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMTSGKELTLNNVLYVPE 391

[Close]
BLAST of CsaV3_1G018400 vs. NCBI nr
Match: CAN66637.1 (hypothetical protein VITISV_011340 [Vitis vinifera])

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 66/120 (55.00%), Postives = 88/120 (73.33%), Query Frame = 0 

Query: 2   GDQFKDCRKPKNFQHKNAHASITVIDEVLDGVADLNLCAVILECNLVG-NSKEWCVDTGA 61
           G +  DCR PK    KN      VID++   V D++L AV+ E NLVG N KEW +DTGA
Sbjct: 287 GHKSVDCRLPK----KNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGA 346

Query: 62  TPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSI 121
           T H+C++K MFS++  + NGE++FMGNS+TS+++GQGK+ILK+TS KELTL NVL+VP I
Sbjct: 347 TRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEI 402

[Close]
BLAST of CsaV3_1G018400 vs. NCBI nr
Match: CAN76029.1 (hypothetical protein VITISV_016069 [Vitis vinifera])

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 66/120 (55.00%), Postives = 88/120 (73.33%), Query Frame = 0 

Query: 2   GDQFKDCRKPKNFQHKNAHASITVIDEVLDGVADLNLCAVILECNLVG-NSKEWCVDTGA 61
           G +  DCR PK    KN      VID++   V D++L AV+ E NLVG N KEW +DTGA
Sbjct: 208 GHKSVDCRLPK----KNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGA 267

Query: 62  TPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSI 121
           T H+C++K MFS++  + NGE++FMGNS+TS+++GQGK+ILK+TS KELTL NVL+VP I
Sbjct: 268 TRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEI 323

[Close]
BLAST of CsaV3_1G018400 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 0 

Query: 44  EC-NLVGNSKEWCVDTGATPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILK 103
           EC +L G   EW VDT A+ H    +++F  YV    G  + MGN+S SK+ G G I +K
Sbjct: 283 ECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFG-TVKMGNTSYSKIAGIGDICIK 342

Query: 104 LTSNKELTLNNVLHVPSI 121
                 L L +V HVP +
Sbjct: 343 TNVGCTLVLKDVRHVPDL 359

[Close]
BLAST of CsaV3_1G018400 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 43  LECNLVGNSKEWCVDTGATPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILK 102
           L  N   N+  W +D+GAT HI ++ N  S +   + G+ + + + ST  +   G   L 
Sbjct: 299 LAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLP 358

Query: 103 LTSNKELTLNNVLHVPSI 121
            TS++ L LN VL+VP+I
Sbjct: 359 -TSSRSLDLNKVLYVPNI 375

[Close]
BLAST of CsaV3_1G018400 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.1e-04
Identity = 23/71 (32.39%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 50  NSKEWCVDTGATPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKEL 109
           +S  W +D+GAT HI ++ N  S +   + G+ + + + ST  +   G   L  T ++ L
Sbjct: 327 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLS-TKSRPL 386

Query: 110 TLNNVLHVPSI 121
            L+N+L+VP+I
Sbjct: 387 NLHNILYVPNI 396

[Close]
BLAST of CsaV3_1G018400 vs. TrEMBL
Match: tr|A0A2N9HII5|A0A2N9HII5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24768 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-31
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 2   GDQFKDCRKPKNFQHKNA-HASITVIDEVLDGVADLNLCAVILECNLVGNSKEWCVDTGA 61
           G + KDCRK  +  +K    A+I+ +  +   V+D+NL AV+ E NLVG++KEW VDTGA
Sbjct: 274 GHRAKDCRKRNDQGNKKTFQANISEVGTLSKDVSDINLSAVVSEVNLVGDTKEWWVDTGA 333

Query: 62  TPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSI 121
           T HIC++KNMFS Y  V +GEQLFMGNSST++VEG+GK+ILK+TS KELTLN+VLHVP I
Sbjct: 334 TRHICSDKNMFSKYHSVEHGEQLFMGNSSTARVEGKGKVILKMTSGKELTLNDVLHVPDI 393

[Close]
BLAST of CsaV3_1G018400 vs. TrEMBL
Match: tr|A0A2N9IC33|A0A2N9IC33_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49737 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-31
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 2   GDQFKDCRKPKNFQHKNA-HASITVIDEVLDGVADLNLCAVILECNLVGNSKEWCVDTGA 61
           G + KDCRK  +  +K    A+I+ +  +   V+D+NL AV+ E NLVG++KEW VDTGA
Sbjct: 243 GHRAKDCRKRNDQGNKKTFQANISEVGTLSKDVSDINLSAVVSEVNLVGDTKEWWVDTGA 302

Query: 62  TPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSI 121
           T HIC++KNMFS Y  V +GEQLFMGNSST++VEG+GK+ILK+TS KELTLN+VLHVP I
Sbjct: 303 TRHICSDKNMFSKYHSVEHGEQLFMGNSSTARVEGKGKVILKMTSGKELTLNDVLHVPDI 362

[Close]
BLAST of CsaV3_1G018400 vs. TrEMBL
Match: tr|A0A2N9IJL5|A0A2N9IJL5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52023 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-31
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 2   GDQFKDCRKPKNFQHKNA-HASITVIDEVLDGVADLNLCAVILECNLVGNSKEWCVDTGA 61
           G + KDCRK  +  +K    A+I+ +  +   V+D+NL AV+ E NLVG++KEW VDTGA
Sbjct: 243 GHRAKDCRKRNDQGNKKTFQANISEVGTLSKDVSDINLSAVVSEVNLVGDTKEWWVDTGA 302

Query: 62  TPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSI 121
           T HIC++KNMFS Y  V +GEQLFMGNSST++VEG+GK+ILK+TS KELTLN+VLHVP I
Sbjct: 303 TRHICSDKNMFSKYHSVEHGEQLFMGNSSTARVEGKGKVILKMTSGKELTLNDVLHVPDI 362

[Close]
BLAST of CsaV3_1G018400 vs. TrEMBL
Match: tr|A0A2N9GLQ0|A0A2N9GLQ0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28270 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-31
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 2   GDQFKDCRKPKNFQHKNA-HASITVIDEVLDGVADLNLCAVILECNLVGNSKEWCVDTGA 61
           G + KDCRK  +  +K    A+I+ +  +   V+D+NL AV+ E NLVG++KEW VDTGA
Sbjct: 232 GHRAKDCRKRNDQGNKKTFQANISEVGTLSKDVSDINLSAVVSEVNLVGDTKEWWVDTGA 291

Query: 62  TPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSI 121
           T HIC++KNMFS Y  V +GEQLFMGNSST++VEG+GK+ILK+TS KELTLN+VLHVP I
Sbjct: 292 TRHICSDKNMFSKYHSVEHGEQLFMGNSSTARVEGKGKVILKMTSGKELTLNDVLHVPDI 351

[Close]
BLAST of CsaV3_1G018400 vs. TrEMBL
Match: tr|A0A2N9H1Q7|A0A2N9H1Q7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33630 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.2e-31
Identity = 71/120 (59.17%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 2   GDQFKDCRKPKNFQHKNA-HASITVIDEVLDGVADLNLCAVILECNLVGNSKEWCVDTGA 61
           G + KDCRK  +  +K    A+I+ +  +   V+D+NL A++ E NLVG++KEW VDTGA
Sbjct: 274 GHRAKDCRKRNDQGNKKTFQANISEVGTLSKDVSDINLSAIVSEVNLVGDTKEWWVDTGA 333

Query: 62  TPHICANKNMFSSYVLVSNGEQLFMGNSSTSKVEGQGKIILKLTSNKELTLNNVLHVPSI 121
           T HIC++KNMFS Y  V +GEQLFMGNSST++VEG+GK+ILK+TS KELTLN+VLHVP I
Sbjct: 334 TRHICSDKNMFSKYNSVEHGEQLFMGNSSTARVEGKGKVILKMTSGKELTLNDVLHVPDI 393

The following BLAST results are available for this feature:
BLAST of CsaV3_1G018400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_009350471.16.7e-2955.74PREDICTED: uncharacterized protein LOC103941999 [Pyrus x bretschneideri][more]
KZV24436.15.7e-2851.24hypothetical protein F511_24231 [Dorcoceras hygrometricum][more]
AAK70407.17.4e-2853.72pol polyprotein [Citrus x paradisi][more]
CAN66637.11.3e-2755.00hypothetical protein VITISV_011340 [Vitis vinifera][more]
CAN76029.11.3e-2755.00hypothetical protein VITISV_016069 [Vitis vinifera][more]
BLAST of CsaV3_1G018400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G018400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P10978|POLX_TOBAC1.6e-0539.74Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
sp|Q9ZT94|POLR2_ARATH1.3e-0434.62Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
sp|Q94HW2|POLR1_ARATH5.1e-0432.39Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_1G018400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2N9HII5|A0A2N9HII5_FAGSY4.7e-3160.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24768 PE=4 SV=1[more]
tr|A0A2N9IC33|A0A2N9IC33_FAGSY4.7e-3160.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49737 PE=4 SV=1[more]
tr|A0A2N9IJL5|A0A2N9IJL5_FAGSY4.7e-3160.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52023 PE=4 SV=1[more]
tr|A0A2N9GLQ0|A0A2N9GLQ0_FAGSY4.7e-3160.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28270 PE=4 SV=1[more]
tr|A0A2N9H1Q7|A0A2N9H1Q7_FAGSY6.2e-3159.17Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G018400.1CsaV3_1G018400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G018400Wax gourdcucwgoB039
CsaV3_1G018400Wax gourdcucwgoB063
CsaV3_1G018400Silver-seed gourdcarcucB1083
CsaV3_1G018400Cucumber (Gy14) v2cgybcucB002
CsaV3_1G018400Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G018400Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G018400Cucurbita pepo (Zucchini)cpecucB0640
CsaV3_1G018400Wild cucumber (PI 183967)cpicucB001
CsaV3_1G018400Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G018400Melon (DHL92) v3.5.1cucmeB017
CsaV3_1G018400Melon (DHL92) v3.6.1cucmedB014
CsaV3_1G018400Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G018400Watermelon (97103) v1cucwmB057
CsaV3_1G018400Watermelon (97103) v2cucwmbB008