CsaV3_1G018380 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G018380
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 11978799 .. 11978990 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGATGGTTATGTGGTTTGGAGACCAAGGGAACCTCCACGTGCGTCAAGGGTGAGGCAGCAAGGGAGACTGTGTCACGACATTGCTTTGATGAAAGGCTTTGTGAGAATGTTTGAAGTGTGCTTTGCAGCCAACGAATGTCCTAGGCATTTAAGGATAGTGGACAAGGTGGAAAACAACTGTCATTAG

mRNA sequence

ATGCCTGATGGTTATGTGGTTTGGAGACCAAGGGAACCTCCACGTGCGTCAAGGGTGAGGCAGCAAGGGAGACTGTGTCACGACATTGCTTTGATGAAAGGCTTTGTGAGAATGTTTGAAGTGTGCTTTGCAGCCAACGAATGTCCTAGGCATTTAAGGATAGTGGACAAGGTGGAAAACAACTGTCATTAG

Coding sequence (CDS)

ATGCCTGATGGTTATGTGGTTTGGAGACCAAGGGAACCTCCACGTGCGTCAAGGGTGAGGCAGCAAGGGAGACTGTGTCACGACATTGCTTTGATGAAAGGCTTTGTGAGAATGTTTGAAGTGTGCTTTGCAGCCAACGAATGTCCTAGGCATTTAAGGATAGTGGACAAGGTGGAAAACAACTGTCATTAG

Protein sequence

MPDGYVVWRPREPPRASRVRQQGRLCHDIALMKGFVRMFEVCFAANECPRHLRIVDKVENNCH
Homology
[Close]
BLAST of CsaV3_1G018380 vs. NCBI nr
Match: KGN65074.1 (hypothetical protein Csa_1G193700 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-31
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPDGYVVWRPREPPRASRVRQQGRLCHDIALMKGFVRMFEVCFAANECPRHLRIVDKVEN 60
          MPDGYVVWRPREPPRASRVRQQGRLCHDIALMKGFVRMFEVCFAANECPRHLRIVDKVEN
Sbjct: 1  MPDGYVVWRPREPPRASRVRQQGRLCHDIALMKGFVRMFEVCFAANECPRHLRIVDKVEN 60

Query: 61 NCH 64
          NCH
Sbjct: 61 NCH 63

[Close]
BLAST of CsaV3_1G018380 vs. TrEMBL
Match: tr|A0A0A0LVU7|A0A0A0LVU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G193700 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-31
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPDGYVVWRPREPPRASRVRQQGRLCHDIALMKGFVRMFEVCFAANECPRHLRIVDKVEN 60
          MPDGYVVWRPREPPRASRVRQQGRLCHDIALMKGFVRMFEVCFAANECPRHLRIVDKVEN
Sbjct: 1  MPDGYVVWRPREPPRASRVRQQGRLCHDIALMKGFVRMFEVCFAANECPRHLRIVDKVEN 60

Query: 61 NCH 64
          NCH
Sbjct: 61 NCH 63

The following BLAST results are available for this feature:
BLAST of CsaV3_1G018380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65074.13.8e-31100.00hypothetical protein Csa_1G193700 [Cucumis sativus][more]
BLAST of CsaV3_1G018380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G018380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G018380 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVU7|A0A0A0LVU7_CUCSA2.5e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G193700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G018380.1CsaV3_1G018380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G018380Silver-seed gourdcarcucB1083
CsaV3_1G018380Cucumber (Gy14) v2cgybcucB002
CsaV3_1G018380Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G018380Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G018380Cucurbita pepo (Zucchini)cpecucB0640
CsaV3_1G018380Wild cucumber (PI 183967)cpicucB001
CsaV3_1G018380Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G018380Melon (DHL92) v3.5.1cucmeB017
CsaV3_1G018380Melon (DHL92) v3.6.1cucmedB014
CsaV3_1G018380Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G018380Watermelon (97103) v1cucwmB057
CsaV3_1G018380Watermelon (97103) v2cucwmbB008
CsaV3_1G018380Wax gourdcucwgoB039
CsaV3_1G018380Wax gourdcucwgoB063