CsaV3_1G017360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G017360
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
Locationchr1 : 11929221 .. 11935872 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAAAGAAGGGTAAGGAGAGGTAATGATTCATACTCCTTGAAAATTAAATCCGTATTTTTATTTATTTGTATTATCTTTAAGATTTTGAAAAGTTTTTTTTACGCTTGTGTATCCAAAGAATGAATGGATGCTTTCGATTTGTAATTATTGAATTGGTTTGTGCTTCAATATTACAAAATCTTGGAGCATGCATGCATGTATATTTTAATTGATTGTGCGATGATAATATACTCATGCACACGAGTGCACATGCACTTTTTGTATTTAATTGAAGTTTCTCTTCTTTTTTTTTAAGTTGCTCATCGGTCTTTTGTAGATATATTTGGTACTTGGTATATGTTGTCAGTATTTAAGCGTGTCGGAGGGCTTTTTAACACACCTCAAATTGTTAGTAAAAGAAAATCAAACTAATTACTTCCATTCATTTGGAATTATAATGTCATAATGATGGTTAGAAGTTTGTGTTTGGTCTTCGTCGATGGTTTTAATTTGAGATTTGCTTGTTAGTTGATTGAGTGATACGATTACGAGTTTTGTAGTTGTTTGAGTGTATATAGAACTTTTTGGTTGTTTGGGTTTATATAGAACTTGTTAGTACGTTTTTGGAATGTGGATAAGAATTTAATTTCTTTTTCATATGTGCTTATTTGATAGTCTTGCTTTATTCTAATTGTTTGGTTGTTGGGTGTATATAGAAATTTACATTAATTATATTTAGTCTTCAACTTTTTAGGTATTATTGTTGATTATAGTTGAGTTCACAAGTGTAAGATTACTTAAATATTCCTTATTGTTTTTTTGACATTTTTTTGTAGATTAAATTGCATCCTTATATAATATGGATAAGCCATGGATGAAAAATAATAGAATGTTAACTGATTATGTTGTTGGGGTTGAGATGTTTATTAAAAATGGGTTGAAACATTCGAAGACATCGAACATCATGACTTGTTCTCGTTTAAAGTGCGTAAATGCAAAGACTTTACATGTGAATACAATTAGAGATCACTTATTATTTTTTAACGGCATCGATAAGAGTTATCAAGTATGAATTTTTCATGGTGAATCACTACCAATGAAGAGAAACAATGAAAGTGTCTTTAGTAGTGCAAGAGAAGAAATTAACGTGGATGATGTTGATGACATAATTGGGATGTTTGATGTTGGTGACATAATTGGGATGTTTGAGGGTGCACACAATTATTTTAATGACCAAGTTAGAAAATTTTGAGAAACTACTAGATGATGCCAAGAAACCATTATATCCTAATTGTAAAATTTTTACCAAAATATCTACATTGATAAAATTATATAATTTGAAAGTTAAATTTGGATGGAGTGAAAAGAGTATCACGGAGTTGTTAAAATTAATTGGTGACATCTTACCTACTCCTAATGAAATCCCTACTTCTACTTATGAAGCAAAAAGATTTTGTGTACTCTTGGAATGAAGTACGAGAAGATACATAAATGTAGAAATGATTGTTCCTTGTTTAGGAAAGAACTCTCTTATGCAAATGTACGCCCCTTTCGTGATGTTATTATTTTTAGATTTTGAGTTTTCACTTATAGTCATCGGATATAGTGTGTTTATTTGATATGTGAATATATATAGATATATGTGTGTGTGTGTGTGTTGGATGATGTGTATTTGTTGTAGTACTTTATGGAAGTGTGAAAAAGTGTGTTGGTATATTATATGTTGGATCTTATTCATTGCGGGTGAAATAGGAATCCTATTGGTTTGTCATAGAGGACAACATGCATTTATTTGATATGTGAATATATATAGGTGTTGGATTATATGTATTTGTTTAATTCTATATGGAAGAAGTGTGGAAAAGTGTATTTGATGTGTATAAGGTTTGCCATGGAGTAGTAGCTCTAGCATTCTATAGCTAGCAAGCGTGCCAACAATTTTTTTTACATTTTTCACAATATACGATGATGAACATTTCCTCTCATAATTCGAGACAAATAATATCGGTTTTGATGTCATAAAAAATGGACAATAATGCAACAATATAATAAAAATAAATTTAAAAATGGGCCAGAAACAAGGTTTTGATGTCGTTTTAAAAATGACATTAAAGGTGTCTTTAATGTCAGTTTAGAAATGACATCAAAGGCCTCTTTAATGTCGGTTTAAAATCAAAATCAAAGGCCAAGGACATTCAAGACCTTCAATAAAACCATCAAAGATATTGATTTTAAATTGACATTAAAGGCCTTTGATGTCGGTTTTAAACCGACATTAAAGAGGCCTTTAATGTCGTTTCTAAACCAACATTAAAGTCAAATCGACATTAAAGGCCTTTTATAATGCTTGCAAAGACGTCAGTTGACAACTGACATTAAAGGCAAAATTTCTTCTAGGGATTTGAGAATTTTTGGATGTGTCATATATGTTCCAATTGCTCTATTACAACGTACTAAGATGGATCCTCAAAGAAGGCTAGAAATATATGTTGGATTCGATTCTCCATAAATTATTAAATATCTTGAAATCTTGAACCTCTTACGGGTCTACATGATTTATTGATTATCATTTTAATTAGACAAATTTTTCAACGTTATAAGGAGAAATTAAAAAAATTGGAAAAAGAAATTACATGAAATGTATCATTATTGTCTCATTTGGATCCTCGTACAGATCAATGTGAACTTGAAGTTCATAAAATAATTCATTTGCAAAATATATATAGCAAATCAGTTACTAGATGCATTTGTAGATGCAAAGAAAGTAACTAAAACACATATCAGAGTTGCAAATGTCTCATAAAAAATTGATATCCCAACATAACAACTTGTCATTAAAGATAAAAATCCTTGAAATAGAAATTGAGTCAATAACTCGATTAAGGATATGGATGTTCCAGAAGAAATCCTATGACACAAAATATCGAAGAAGATAAAACAACTAAGACAGGAAAGAGATGGAATATAATTAATGCAGTTGTTGATAATAGTTTGCACTTGATACTATATTAAAAAATGAAGATCCATAACCAAAATTCGTTGAAGAATGTCGACAGAGAAAAGATTGGTCTTTGTGGAAAGAATCAATTGAGGCAAAATTAAATTCACTTTCAAAATGTCAAGTTTTTGAATCAGTAGTCCAAACAGCAAAAGGTGTCAAACCTGTGGAATATAAATGGATATTTGTGAGAAAAAGAAATGAAGATAATGAGATTACAAGAGATGAAGGAAGATTAGTTGCACAAGGTTTTTCACAAAGACCTGGTATTGACCATGAGGAGACATATTCTCTGATGGTGGATGAAATCACATTAAGATTTTTTATTGGCTTGGTTGTGTATAAAAATTTGGACATGCATCTTATGGATGTAGTCATAACATATTTATATGGATCTCTTGATAATGATATTTAAATAAAAGTTCTAGAAGGATTTAAGATACTTGAAATATATAAATCAAGTTTTCGAGAACTATATTCAATAAAGTTACAGAGATCATTATATGGATTAAAACAATCAATACTAATGTGGTATATAATCATCTGAGTGAATATTTGTTGAAAGAAGGATATCAAAATATTCAAATATGTCCATGCATTTTTATAAATAAATCATAGCCAAGATTTGCTATTATAACTCTATATGTTGATGATTTAAATATAGTCTGAACTCTTGAAGAGCTTTCAAAGACAATAAAATATCTTAAGAAAGAATTCAAGATGAAAGACCTCGGAAATACAAATTTTTGCCTCAGTTTGCAATTTGAGCATTTGGCAGATGAGATATTTGTTTATCAATCAACTTATATTGGAAATTTTTTTAAAAGACTTTATATGGATAAAGCACATCCATTGAACATTCCAATGCAAGTTCGTTTACTAGATGTAAAGCAATATATATTTCAACCCCGAGTTGATAATGAAGAACTTCTTGACCTATAAGTACCATATCTTAGTGCAATTGTTACACTTATGTATCTTGTTAATAATACAAGACCAGATATTGTATTTTTAGTAAATTGATAACTACATCTTCCTTTGTGGACTTAGAAGCACTGTGGTTTCTTTAAGAAGTTTGAATATAGTCTTTGTTATTGTGTAGAATTGTAAGCTGCTAGTTTTCTTGTTAAGGCTCATTCAATTTCCCATTTTAATCATTTCACTTAAAATTGTTGACCCACTTGCATCTTGGAGTTATTTTATTTCAAATTCTTGATAAGCAAATCAAAATTTGGGACGTATCTACTGGACAATGTAATATAACTGTGCAACATCATACAGACAAGGTAAGAATCTCAATTGTATTGCTTTGATCGTGCGTGTTCGAGTTCATTCATTCAAACTTGCACCAACAATGATCTGTTCATGAGCATGAATGTAAGCAAGCTTTGAGACATCTCACATTCACCTTTTGCTGAATTTTATACATAAAAAGTGAAAAGTCTAAATTTGAGCATTTTCATATTAATTGGTTTGATCTTTTTTTTTTTTTTAGGATGAAATCTATTATCATTAATCCTTCTAGGAAAGAGTATGGTTTGATGGTGAATTACTACACAAGGAGAGGTGATATGAACGGTGCACGTGAAATCTTTGAAAATATGCGAGCTAGGGAAATAGAACCATGGTCTCATGTCTACACAAAGTAATAACTACTCCTATTTTCTCCCTTTCTTTCGTCATATGTTAATTTGATCTCAACGTTAGCTTAATATTTTTGCTTCATTTATTGACATAAAGGTCACCATTCTAGTTTTGAATATGGTTAAAGTTTGATTGATTTGTATAGAAGGCCAATTAAGTATTTTATGCTTGAAATATATATTTTGATGGTAGATATGTCGTTGCAAAAGTATATTTACTATATTAATTCAATCTAAATATTTTTCAAGTGTGTCGTTTTGCGATAATAGTAAGCTTTAATGATGTGCAACATTATTCATACCATCTTTTGTTAGAAAAATGAAAGAAGAGAAGGAGGCATAGAAATGAGCTTGGTAACTTACACCATTCTTGTTGGTGGATTTGCCAAAATGAAAAATGCAGAGTAAGTAATTATTATTAAATGTGTGCATGCGTAGGTTCATAAAATTTTCGTTATATATATACATATATTTCTTTTGCATATATAACGTTATAAAATATGGCCACGGGCGTGTTGCACTCATAGAAGTACATAATCATTGTGATGCTATTGTGGATGGAGCAAATGTTGGCCTCTGTCAACATAATTTTGTAGATTATGGATTTAATCTTCCTCATGTTGTAAAGTATATATTTTGGTCTTACATAGCCAGCCAAGCTAAGCGATTATGAAGATTTGTTTAGCATTTTATGAGAATGGTGATGCATTAAAGATTCGATTTTATTGAAATCTTGTTCCTTTTAATAAAGATGTAGCACTTCATTTCACATGCTATCTGTCAATGCTCATCATATATTAATTATTGAAATCTTGTTCCTTTTAATAAAGATGTAGCACTTCATTTCACATGCTATCTGTCAATGCTCATCATATATTAATTTCTAACTCGCACATCCTATTACTTGTAAATTGATGCATATGATGCTTTTTATGCTAGGATCAAATTTATTTTGTAGATATTTATGTTTTTTTTTTTTTTTTGGTATAGCTATTTGGAGTGTTATGTGAAGCAAAATATCTTTAGAATGTGATGCGTTTTGGTTTTCGATTGAGATTAGTCTTGGTAATTAATTGTTTTCAATTGTGTTTTATTTTATCTTTTAGTTAATTTTAGTAGTAATGTTTTTGTTTTCTTTAGTTTAGTTTGAGTATTAGTCTGTTTTGATATATTTGTAGGTTGCATCTATTTTTCCATATATTTATCTTTGATCAATACCTAGCTAGTGGAGTATGGACTTCCTTATATTCCATGTTCTTTTACTATTTGGGATTTTCACCTTCGATATATGAAATTCATTAACTATTTTCATTTGAAAGGAAAAACGATCCAATAGGAGTTTGTAAGATTATTTATCATCTCCATTATTCAACTTTCTCTATAAAAACAATGTTGTTATTGATGGGTAAATTTATACAATTAAGAGTAAGAAGCCTGTAGACTAACATTGCTAAATTGAACATTTAAAATTTGCTTTGAAGTCAGAGTCGAGGATAGTATAATTATTCTTTAGTTGTATTCCTCTTTTTGTTGTTGATCTTTGAAGAACCAAATCAGGTTAACGAGTTGTTTGATAAAAGCTAATTTTCTTCTTTATTTCTGCAGTACTTTTGGGTTGTCATTTCAATCGTCTTCTTTGTTGTTGCTACATTATTTACTTTACGAAAACTTTGTAGTAATTTTTAATTTTCCACATTTAGATTGCAGTCTGTTTAGTTTGATTTTAAATAATATGTACTAATTTTGCAGATTCTAGATTTAATCTTCCTCAGGTTGTAAAGTATATTTTGGTCTTAGATAGCCAGCCAAGCTAAGCTAAGCGATTGTGTAGATGGAAGCGATCGTTGAAAGTTGAAGATTGTGAAGGCGTTTAAGATTTCTTATTTAAGTCTTGTATTAGGATCTAGTTTCATGTATTATTGTAGAATGTATATACAAACGCAATATTAAGATTTCATTTTCTGTATACAAATGTAAAAGAAAAATATTCTAGTTTCTAAAATAATATTAATTTTATTGATTTGTTGGAG

mRNA sequence

ATGAAATCTATTATCATTAATCCTTCTAGGAAAGAGTATGGTTTGATGGTGAATTACTACACAAGGAGAGGTGATATGAACGGTGCACGTGAAATCTTTGAAAATATGCGAGCTAGGGAAATAGAACCATGGTCTCATGTCTACACAAAATTCTAG

Coding sequence (CDS)

ATGAAATCTATTATCATTAATCCTTCTAGGAAAGAGTATGGTTTGATGGTGAATTACTACACAAGGAGAGGTGATATGAACGGTGCACGTGAAATCTTTGAAAATATGCGAGCTAGGGAAATAGAACCATGGTCTCATGTCTACACAAAATTCTAG

Protein sequence

MKSIIINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYTKF
Homology
[Close]
BLAST of CsaV3_1G017360 vs. NCBI nr
Match: KGN52179.1 (hypothetical protein Csa_5G613570 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYTK 51
           I  PSRKEYGLMVNYY RRGDM+ ARE FE MRAR IEP SHVYTK
Sbjct: 306 IKKPSRKEYGLMVNYYARRGDMHRARETFEKMRARGIEPSSHVYTK 351

[Close]
BLAST of CsaV3_1G017360 vs. NCBI nr
Match: GAV85381.1 (RRM_1 domain-containing protein/PPR domain-containing protein/PPR_1 domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-10
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYTKF 52
           I  PSR+E+GLMV YY RRGDM+ AR+ FE+MRAR IEP SHVYT++
Sbjct: 264 IKKPSRREFGLMVKYYARRGDMHRARQTFESMRARGIEPTSHVYTRY 310

[Close]
BLAST of CsaV3_1G017360 vs. NCBI nr
Match: XP_012858484.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Erythranthe guttata] >EYU19828.1 hypothetical protein MIMGU_mgv1a000898mg [Erythranthe guttata])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-10
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYT 50
           I  PSRKE+GL+VNYY RRGDM+ ARE+FE MRAR IEP  HVYT
Sbjct: 297 IKKPSRKEFGLIVNYYARRGDMHRAREMFEKMRARGIEPTLHVYT 341

[Close]
BLAST of CsaV3_1G017360 vs. NCBI nr
Match: EYU19829.1 (hypothetical protein MIMGU_mgv1a000898mg [Erythranthe guttata])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-10
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYT 50
           I  PSRKE+GL+VNYY RRGDM+ ARE+FE MRAR IEP  HVYT
Sbjct: 297 IKKPSRKEFGLIVNYYARRGDMHRAREMFEKMRARGIEPTLHVYT 341

[Close]
BLAST of CsaV3_1G017360 vs. NCBI nr
Match: XP_020413248.1 (pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X2 [Prunus persica])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYTK 51
           I  PSR EYGLMV YY RRGDM  ARE FE+MRAR IEP SHVYT+
Sbjct: 306 IKKPSRGEYGLMVKYYARRGDMYRARETFESMRARGIEPTSHVYTR 351

[Close]
BLAST of CsaV3_1G017360 vs. TAIR10
Match: AT5G04810.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-11
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYT 50
           I  PSR E+GLMV +Y RRGDM+ ARE FE MRAR I P S +YT
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYT 348

[Close]
BLAST of CsaV3_1G017360 vs. Swiss-Prot
Match: sp|Q0WMY5|PP365_ARATH (Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPR4 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-09
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYT 50
           I  PSR E+GLMV +Y RRGDM+ ARE FE MRAR I P S +YT
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYT 348

[Close]
BLAST of CsaV3_1G017360 vs. TrEMBL
Match: tr|A0A0A0KTE3|A0A0A0KTE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613570 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.0e-12
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYTK 51
           I  PSRKEYGLMVNYY RRGDM+ ARE FE MRAR IEP SHVYTK
Sbjct: 306 IKKPSRKEYGLMVNYYARRGDMHRARETFEKMRARGIEPSSHVYTK 351

[Close]
BLAST of CsaV3_1G017360 vs. TrEMBL
Match: tr|A0A1Q3CZ09|A0A1Q3CZ09_CEPFO (RRM_1 domain-containing protein/PPR domain-containing protein/PPR_1 domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28818 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-10
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYTKF 52
           I  PSR+E+GLMV YY RRGDM+ AR+ FE+MRAR IEP SHVYT++
Sbjct: 264 IKKPSRREFGLMVKYYARRGDMHRARQTFESMRARGIEPTSHVYTRY 310

[Close]
BLAST of CsaV3_1G017360 vs. TrEMBL
Match: tr|M1ACD9|M1ACD9_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYT 50
           I  PSRKE+GLMVNYY RRGDM+ ARE FE MRAR IEP  HVYT
Sbjct: 284 IKKPSRKEFGLMVNYYGRRGDMHRARETFEKMRARGIEPTVHVYT 328

[Close]
BLAST of CsaV3_1G017360 vs. TrEMBL
Match: tr|M1ACD8|M1ACD8_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYT 50
           I  PSRKE+GLMVNYY RRGDM+ ARE FE MRAR IEP  HVYT
Sbjct: 284 IKKPSRKEFGLMVNYYGRRGDMHRARETFEKMRARGIEPTVHVYT 328

[Close]
BLAST of CsaV3_1G017360 vs. TrEMBL
Match: tr|K4BPC7|K4BPC7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 5   IINPSRKEYGLMVNYYTRRGDMNGAREIFENMRAREIEPWSHVYT 50
           I  PSRKE+GLMVNYY RRGDM+ ARE FE M AR IEP SHVYT
Sbjct: 238 IKKPSRKEFGLMVNYYARRGDMHRARETFEKMCARGIEPTSHVYT 282

The following BLAST results are available for this feature:
BLAST of CsaV3_1G017360 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52179.11.2e-1180.43hypothetical protein Csa_5G613570 [Cucumis sativus][more]
GAV85381.15.1e-1068.09RRM_1 domain-containing protein/PPR domain-containing protein/PPR_1 domain-conta... [more]
XP_012858484.18.7e-1073.33PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic ... [more]
EYU19829.18.7e-1073.33hypothetical protein MIMGU_mgv1a000898mg [Erythranthe guttata][more]
XP_020413248.11.1e-0973.91pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X2 ... [more]
BLAST of CsaV3_1G017360 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04810.19.6e-1164.44pentatricopeptide (PPR) repeat-containing protein[more]
BLAST of CsaV3_1G017360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0WMY5|PP365_ARATH1.7e-0964.44Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidop... [more]
BLAST of CsaV3_1G017360 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KTE3|A0A0A0KTE3_CUCSA8.0e-1280.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613570 PE=4 SV=1[more]
tr|A0A1Q3CZ09|A0A1Q3CZ09_CEPFO3.4e-1068.09RRM_1 domain-containing protein/PPR domain-containing protein/PPR_1 domain-conta... [more]
tr|M1ACD9|M1ACD9_SOLTU5.8e-1075.56Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
tr|M1ACD8|M1ACD8_SOLTU5.8e-1075.56Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
tr|K4BPC7|K4BPC7_SOLLC5.8e-1075.56Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017360.1CsaV3_1G017360.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..51
e-value: 2.2E-6
score: 29.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 13..44
e-value: 8.1E-7
score: 26.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 10.019
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 5..50
NoneNo IPR availablePANTHERPTHR24015:SF274SUBFAMILY NOT NAMEDcoord: 5..50

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G017360Silver-seed gourdcarcucB1083
CsaV3_1G017360Cucumber (Gy14) v2cgybcucB002
CsaV3_1G017360Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G017360Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G017360Cucurbita pepo (Zucchini)cpecucB0640
CsaV3_1G017360Wild cucumber (PI 183967)cpicucB001
CsaV3_1G017360Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G017360Melon (DHL92) v3.5.1cucmeB017
CsaV3_1G017360Melon (DHL92) v3.6.1cucmedB014
CsaV3_1G017360Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G017360Watermelon (97103) v1cucwmB057
CsaV3_1G017360Watermelon (97103) v2cucwmbB008
CsaV3_1G017360Wax gourdcucwgoB039
CsaV3_1G017360Wax gourdcucwgoB063