CsaV3_1G017340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G017340
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA topoisomerase 2-binding protein 1
Locationchr1 : 11906973 .. 11907540 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTGGCGATGGGAAGGAATGAAGAAAACACTGTTAATTGCCTTGCAAATGACTTTCAGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGGTTGTAAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAGATCCGTCAGAAATGTAATTATCCTTTTACTTAAATCGCAGCATAAGTTTTGTGAACTTTATTGCTTGAATTTGTGAGCTCGCTTGTGCTGTGAGCTTTTTGATTTCATTTGAATGATATATCCACCTAATTGGAAATTAGTTTTATCATATTTGAAATGGCAGGGAGAAAAAGGAGGTTAGAGATATTGCCACTTCGGGAGTCGTTCATGTGGTTAGATCCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAAATTATTCCTAAAG

mRNA sequence

ATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTGGCGATGGGAAGGAATGAAGAAAACACTGTTAATTGCCTTGCAAATGACTTTCAGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGGTTGTAAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAGATCCGTCAGAAATGGAGAAAAAGGAGGTTAGAGATATTGCCACTTCGGGAGTCGTTCATGTGGTTAGATCCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAAATTATTCCTAAAG

Coding sequence (CDS)

ATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTGGCGATGGGAAGGAATGAAGAAAACACTGTTAATTGCCTTGCAAATGACTTTCAGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGGTTGTAAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAGATCCGTCAGAAATGGAGAAAAAGGAGGTTAGAGATATTGCCACTTCGGGAGTCGTTCATGTGGTTAGATCCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAAATTATTCCTAAAG

Protein sequence

MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQKKEIPILGRHMAYDEIIPKX
Homology
[Close]
BLAST of CsaV3_1G017340 vs. NCBI nr
Match: XP_016899869.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_016899870.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 455 KKEIPILGRHMAYDELIPK 473

[Close]
BLAST of CsaV3_1G017340 vs. NCBI nr
Match: XP_016899871.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_016899872.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 455 KKEIPILGRHMAYDELIPK 473

[Close]
BLAST of CsaV3_1G017340 vs. NCBI nr
Match: XP_008444202.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 283 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 342

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 343 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 402

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 403 KKEIPILGRHMAYDELIPK 421

[Close]
BLAST of CsaV3_1G017340 vs. NCBI nr
Match: XP_022936988.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 1.9e-67
Identity = 124/139 (89.21%), Postives = 134/139 (96.40%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPV M +NEENT NC+ANDFQSE+NDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVTMSKNEENTENCIANDFQSEDNDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+PSEMEKKEVRDIA SGV+HVVR+ WLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIP+LGRHMAYDE+IPK
Sbjct: 455 KKEIPVLGRHMAYDELIPK 473

[Close]
BLAST of CsaV3_1G017340 vs. NCBI nr
Match: XP_022936987.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 1.9e-67
Identity = 124/139 (89.21%), Postives = 134/139 (96.40%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPV M +NEENT NC+ANDFQSE+NDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVTMSKNEENTENCIANDFQSEDNDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+PSEMEKKEVRDIA SGV+HVVR+ WLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIP+LGRHMAYDE+IPK
Sbjct: 455 KKEIPVLGRHMAYDELIPK 473

[Close]
BLAST of CsaV3_1G017340 vs. TAIR10
Match: AT1G77320.1 (transcription coactivators)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-36
Identity = 67/116 (57.76%), Postives = 89/116 (76.72%), Query Frame = 0 

Query: 24  EENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTH 83
           E+N   C A D +SE+NDLYLS CRI ++GFEASEM+K+  ++ RGGGSRYML N+++TH
Sbjct: 346 EQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTH 405

Query: 84  IIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQKKEIPILGRHMAYDEIIPK 140
           I+VG PSE EK+E R +A SGV+ VV  +WLEDCDR+KKEIP+   + A   I+P+
Sbjct: 406 IVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTANHLILPR 461

[Close]
BLAST of CsaV3_1G017340 vs. Swiss-Prot
Match: sp|Q6ZQF0|TOPB1_MOUSE (DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 0 

Query: 25  ENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTHI 84
           EN  N   + FQ+ E+   L  CRI + GF   ++ K+  +I  GGG R+   N+ +TH+
Sbjct: 341 ENLENLDISMFQAPED--LLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHV 400

Query: 85  IVGDPSEMEKKEVRDI--ATSGVVHVVRSNWLEDC 118
           IVGD  +    +VR     +S   HVV + WL +C
Sbjct: 401 IVGDYDD----DVRQFWSKSSHRPHVVGAKWLLEC 429

[Close]
BLAST of CsaV3_1G017340 vs. Swiss-Prot
Match: sp|Q92547|TOPB1_HUMAN (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-07
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 0 

Query: 25  ENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTHI 84
           EN  N   + FQ+ E+   L  CRI + GF   ++ K+  +I  GGG R+   N+ +TH+
Sbjct: 342 ENLENLDVSAFQAPED--LLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHV 401

Query: 85  IVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDC 118
           IVGD  +  K+     A     HVV + WL +C
Sbjct: 402 IVGDYDDELKQFWNKSAHR--PHVVGAKWLLEC 430

[Close]
BLAST of CsaV3_1G017340 vs. TrEMBL
Match: tr|A0A1S4DV57|A0A1S4DV57_CUCME (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 455 KKEIPILGRHMAYDELIPK 473

[Close]
BLAST of CsaV3_1G017340 vs. TrEMBL
Match: tr|A0A1S4DV59|A0A1S4DV59_CUCME (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 455 KKEIPILGRHMAYDELIPK 473

[Close]
BLAST of CsaV3_1G017340 vs. TrEMBL
Match: tr|A0A1S3BAL1|A0A1S3BAL1_CUCME (DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 283 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 342

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 343 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 402

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 403 KKEIPILGRHMAYDELIPK 421

[Close]
BLAST of CsaV3_1G017340 vs. TrEMBL
Match: tr|A0A1Q3D0H7|A0A1Q3D0H7_CEPFO (BRCT domain-containing protein/PTCB-BRCT domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29359 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 9.3e-47
Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDA+  +   D E+      NE N   C+AND QSE+NDLYLS CRI +VGFEA EM+
Sbjct: 367 MFSDATVLVKGGDAEMVTMQPTNETNLDGCVANDSQSEDNDLYLSECRILLVGFEAGEMR 426

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNM+ RGGGSRYMLFNDKLTHI+VG PSE+EKKEVR +A  GV+HVVR+ WLEDCDR+
Sbjct: 427 KLVNMVRRGGGSRYMLFNDKLTHIVVGTPSEIEKKEVRSLAALGVIHVVRTTWLEDCDRE 486

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKE P+ GRH+AYD + PK
Sbjct: 487 KKEFPVYGRHIAYDLLRPK 505

[Close]
BLAST of CsaV3_1G017340 vs. TrEMBL
Match: tr|B9S2U2|B9S2U2_RICCO (Topbp1, putative OS=Ricinus communis OX=3988 GN=RCOM_0562150 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.5e-44
Identity = 86/139 (61.87%), Postives = 109/139 (78.42%), Query Frame = 0 

Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSD    + E D EVP     NE N   C+AND QSE++DLYLS CRI +VGFEASE++
Sbjct: 296 MFSDPPVSVKEWDNEVPAVHPTNETNLDGCVANDSQSEDSDLYLSECRISLVGFEASELR 355

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNM+ RGGGSRY+ FNDKLTHI+VG P+E+EKKE+R +A  GV+ VVR  WLEDCDRQ
Sbjct: 356 KLVNMVRRGGGSRYLSFNDKLTHIVVGAPTEVEKKELRGLAALGVIDVVRPTWLEDCDRQ 415

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKE+P++ +H+AYD ++PK
Sbjct: 416 KKEVPVIRQHLAYDLLLPK 434

The following BLAST results are available for this feature:
BLAST of CsaV3_1G017340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899869.12.6e-6994.24PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_0... [more]
XP_016899871.12.6e-6994.24PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_0... [more]
XP_008444202.12.6e-6994.24PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo][more]
XP_022936988.11.9e-6789.21DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata][more]
XP_022936987.11.9e-6789.21DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata][more]
BLAST of CsaV3_1G017340 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77320.12.7e-3657.76transcription coactivators[more]
BLAST of CsaV3_1G017340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6ZQF0|TOPB1_MOUSE5.7e-0735.79DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV... [more]
sp|Q92547|TOPB1_HUMAN7.4e-0735.48DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=... [more]
BLAST of CsaV3_1G017340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DV57|A0A1S4DV57_CUCME1.7e-6994.24DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S4DV59|A0A1S4DV59_CUCME1.7e-6994.24DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S3BAL1|A0A1S3BAL1_CUCME1.7e-6994.24DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1Q3D0H7|A0A1Q3D0H7_CEPFO9.3e-4765.47BRCT domain-containing protein/PTCB-BRCT domain-containing protein OS=Cephalotus... [more]
tr|B9S2U2|B9S2U2_RICCO2.5e-4461.87Topbp1, putative OS=Ricinus communis OX=3988 GN=RCOM_0562150 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017340.1CsaV3_1G017340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 41..121
e-value: 0.0057
score: 25.9
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 39..131
score: 12.171
IPR001357BRCT domainCDDcd00027BRCTcoord: 47..117
e-value: 2.237E-4
score: 35.3751
IPR036420BRCT domain superfamilyGENE3DG3DSA:3.40.50.10190coord: 21..127
e-value: 3.5E-16
score: 61.1
IPR036420BRCT domain superfamilySUPERFAMILYSSF52113BRCT domaincoord: 42..125
NoneNo IPR availablePANTHERPTHR13561DNA REPLICATION REGULATOR DPB11-RELATEDcoord: 36..128
NoneNo IPR availablePANTHERPTHR13561:SF20DNA TOPOISOMERASE 2-BINDING PROTEIN 1coord: 36..128

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G017340Silver-seed gourdcarcucB1083
CsaV3_1G017340Cucumber (Gy14) v2cgybcucB002
CsaV3_1G017340Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G017340Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G017340Cucurbita pepo (Zucchini)cpecucB0640
CsaV3_1G017340Wild cucumber (PI 183967)cpicucB001
CsaV3_1G017340Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G017340Melon (DHL92) v3.5.1cucmeB017
CsaV3_1G017340Melon (DHL92) v3.6.1cucmedB014
CsaV3_1G017340Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G017340Watermelon (97103) v1cucwmB057
CsaV3_1G017340Watermelon (97103) v2cucwmbB008
CsaV3_1G017340Wax gourdcucwgoB039
CsaV3_1G017340Wax gourdcucwgoB063