CsaV3_1G017180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G017180
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 11729897 .. 11732488 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTTGTATTTAGTTCATCAGTTTTTCAATTTCATGCACAGGTATTGATTTCTTTGTTTACCTTTCAAGAAATTAAATTTCCATGTGTTGATTTTGCTTTCTCCTCTTACTTCCTTGGATTAGGAGATATTCTCAACCCAACTTATATTTTTCACCCTATTTTCTCAGTTTCTCCTTGTGATAGCCATACCCAAACTCTCTCACCTAAGAGTGTAAGAATAATCCGATAATCCAAACTACCAAAGTCATATTATCTAGGTAAAGTTGAATTTAGTATAAAATGTGGGTTGGATGAGTTGAAAATTTTGATATTTTTTGGGTTGGATTGGGTCTCGGGTCGGAAGGTTAAAAAATTGTGGTCAACCCAACTCAATTCGAATTAATATGGATATAATGTATATATATATATATATATATTATTTATTTAATAAAAGTTAAATAATTTAGGTTAGCCGTGCGTATTCCTCTTCTCAGTTTCTCTTCCTCGCGCGCCGTCCGTCTCCCTCTTCTCAGGCGCCGTCCATTTCCCTCTTCTTAGCAGCCGTCCGTCTCCCTCCCGGCTTTCTCCCACCGATACTCCTTCCGAAGGCCATTCTAACAGCTTGGTACACTAAAATTATTTACTCTGGCAAAATTAAACTTCAATGTTTGATGTATGTCTAAAGCTTAATAATCTAAATTAGACATGATATTTGAAGCTCTCAATTGAAACTTCTTATTATGCCTTGTGGTTATGGTTTCTCGATGAACCTGGGATTGTGGTGTAAAAAAATGGGGATTTAACAAGTATATAACCACACTAAGAGATGATTTATCCCAAGCACTTGATCGTGGTGCTCAGTTTGGGATCTTTATTGTTCATGCCAATCTGTTTTTAGTAGATGAGCTAAATATGCAAGTAATCTAGCTAGCCGGTGAGTCAGGTCTTCGATTATCGTTTTCTCTTTGAAAGTCTTAGTTTTTTTTTTCTTGTCAGGGATAGTTTTTGCATTCTAACTATGGAAAAGAAGGATTGTCGTTTTTCTACTCTTGCTACACAAACATGTAACTGTGGAGCATTATTGGAGCCCTTTACTTTTTTCACCTTACCTGCGTTCAACTTTTAGTATTCTGAAATTATATTTGTTCCCCATCAATTACTACAGGAGAATGGAATTGTTCAGTCGGGACAAATTTCATGCCCCTTTATCTCCGTCCTCAGTTTTTTCCTCGTCTCGAAACTGTCAAGAATTATAAGTTCAAGTTACAAGCTTTTGGATATGGCTTCTCTTGAAGCTATTTTAACTTGTAATAGAAATTTAGCTCTTTCAATCTCTTACTTTAGTGGCTGAATGCTTAAAAAGGTTGTATTATTTTGTATCTGGATATATATCTTAGAATCAGATGATTTGAAGATTAAGAACATATTTATTGTATTTACTACTAGGAGTTTGTTAATGCCTTGCAATGTTTGTCCTAAAGCAAAAAATAATGTTGTGTATAAGAGATCTTCCACGTTTCCTGTTCCTGTTTTGGTCATTGTATTAATTATTGTAAATACCAGTACTACAATCCGCTGAAACAAGCATAGGGAATTAAGTTTGTTATCTATGTGATTTGATTTTGCCTTCTCTGTTGGGTGACTTCTTTTTATTACATTGTTCTTATGTGATTTTGTTTATGGCAAAAGGAGCTACTTATACTTGTGACTTCTAAGTAAGAATAAATAAACATAGATGGTTTGTTGTTACTTTTTAAACTTTACAAACATTAGAATTTAGAAACGAAAAAATATATATATATAACCCAACAACCCAACCCAACCCATTTACACCCGTACTCTCACCTATTGTATTTCATTTCTTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCATTGCTGCATAAAGCTCCATCCCAAGGTCTGTCCTATTTTTCTTATCATTCTTACGTTTTTATTGTTATTACTATTCTTTCTCCATTATTCTTCCCCATTTTTCTTCCTTAACTTCCTCTCATTAATCTCATCTTTTTTCTCTTCTCTCTCTTTTCCATCTATAATTCAACAATCACCCCTAATTTTATTTTCAAATCTTGCCAGATTTAGTTTCATGTCTTCTGGGGTTCATACGTTTGCCAATCCTTTAGCATCCACAATTCTTTTTCTTTTTTCTAGCTTAGATATCCATCTTATTATGTAGAGTGATTTTAGTGGGGGCAAAGCTTTTACTTACTTGAAAGATTGAACTTTTTTCAAACCTGACAAGGTAGTACCAGACTCCTCCTACCTATAGTTAGATTAGTTTCATATGTATTGTTGATCTGGTTTCTTATAAACAACTGCTTTCTCTTCTGTTTATCAAACTTTCTAACACATTCTTCCTCTACTTGAACAATTGTTTTATAATCTTCTTTATCATTTTTATAATCCTAATCTAGTTTTATTTTCAACTACAGAAGAGAATCTCTGCACAATCTTTGCTCTTTATATTTACATTTTGTTATGTTGTGTTTGTTTAGGTTAGCTGACATTTTGCACACCCATAAAATCTATTGGCTTGTGAGTCTGTGA

mRNA sequence

ATGTTTGTTGTATTTAGTTCATCAGTTTTTCAATTTCATGCACAGGTTAGCCGTGCGTATTCCTCTTCTCAGTTTCTCTTCCTCGCGCGCCGTCCGTCTCCCTCTTCTCAGGCGCCGTCCATTTCCCTCTTCTTAGCAGCCGTCCGTCTCCCTCCCGGCTTTCTCCCACCGATACTCCTTCCGAAGGCCATTCTAACAGCTTGGTTAGCTGACATTTTGCACACCCATAAAATCTATTGGCTTGTGAGTCTGTGA

Coding sequence (CDS)

ATGTTTGTTGTATTTAGTTCATCAGTTTTTCAATTTCATGCACAGGTTAGCCGTGCGTATTCCTCTTCTCAGTTTCTCTTCCTCGCGCGCCGTCCGTCTCCCTCTTCTCAGGCGCCGTCCATTTCCCTCTTCTTAGCAGCCGTCCGTCTCCCTCCCGGCTTTCTCCCACCGATACTCCTTCCGAAGGCCATTCTAACAGCTTGGTTAGCTGACATTTTGCACACCCATAAAATCTATTGGCTTGTGAGTCTGTGA

Protein sequence

MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILLPKAILTAWLADILHTHKIYWLVSL
Homology
[Close]
BLAST of CsaV3_1G017180 vs. NCBI nr
Match: KGN65054.1 (hypothetical protein Csa_1G185105 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 3.0e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60
          MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL
Sbjct: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60

Query: 61 PKAILTAWLADILHTHKIYWLVSL 85
          PKAILTAWLADILHTHKIYWLVSL
Sbjct: 61 PKAILTAWLADILHTHKIYWLVSL 84

[Close]
BLAST of CsaV3_1G017180 vs. TrEMBL
Match: tr|A0A0A0LVT6|A0A0A0LVT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G185105 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60
          MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL
Sbjct: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60

Query: 61 PKAILTAWLADILHTHKIYWLVSL 85
          PKAILTAWLADILHTHKIYWLVSL
Sbjct: 61 PKAILTAWLADILHTHKIYWLVSL 84

The following BLAST results are available for this feature:
BLAST of CsaV3_1G017180 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65054.13.0e-36100.00hypothetical protein Csa_1G185105 [Cucumis sativus][more]
BLAST of CsaV3_1G017180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G017180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G017180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVT6|A0A0A0LVT6_CUCSA2.0e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G185105 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017180.1CsaV3_1G017180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G017180Silver-seed gourdcarcucB1083
CsaV3_1G017180Cucumber (Gy14) v2cgybcucB002
CsaV3_1G017180Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G017180Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G017180Cucurbita pepo (Zucchini)cpecucB0021
CsaV3_1G017180Cucurbita pepo (Zucchini)cpecucB0640
CsaV3_1G017180Wild cucumber (PI 183967)cpicucB001
CsaV3_1G017180Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G017180Melon (DHL92) v3.5.1cucmeB014
CsaV3_1G017180Melon (DHL92) v3.6.1cucmedB025
CsaV3_1G017180Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G017180Watermelon (97103) v1cucwmB057
CsaV3_1G017180Watermelon (97103) v2cucwmbB008
CsaV3_1G017180Wax gourdcucwgoB039
CsaV3_1G017180Wax gourdcucwgoB063