CsaV3_1G016980 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G016980
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ribose-phosphate pyrophosphokinase
Location	chr1 : 11496782 .. 11497269 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATTCTGTTGATTGGTTTTTGTTCACGAGAGGATTTGAAGGGATTTTTTTGTGTGTAGAAGATAGATGGGGGAAAAATTAGATAAAACAGTTTTAAGTGTTGAATGTAATGTTTTGTCATGTTCGAAGATGAATGTTGGAGATGGGAAGTTTTGGGGGTTTTCCTCCTCTTTCCCTGTTGTTCTAAGAATTGTGTTGCTATTACTTTTCTGACTGTGTAAATATTTTGTTGCTGGTAAAAGTTTTCACTGTTAAGGTTCTGTTGCATTCGTTCTTATGTTTCGTTTTAATTTTTTTTTCTTTTCTTTTCCAGAGATGTGATATGTCCGAGTCTTTGAGGCATGTGAACGGGAAACCAACAATTCCAATTGTTACTGAACGGACGTTGCCCAAGTTCTTGGAGTCAGCTCGCATGGAGAACAGAGTTAATAGAAGTAGTACACGTTTGAAATTGTTTTCTGGGTCTGCAAATCGTTTACTTTCTCAG

mRNA sequence

ATGTCCGAGTCTTTGAGGCATGTGAACGGGAAACCAACAATTCCAATTGTTACTGAACGGACGTTGCCCAAGTTCTTGGAGTCAGCTCGCATGGAGAACAGAGTTAATAGAAGTAGTACACGTTTGAAATTGTTTTCTGGGTCTGCAAATCGTTTACTTTCTCAG

Coding sequence (CDS)

ATGTCCGAGTCTTTGAGGCATGTGAACGGGAAACCAACAATTCCAATTGTTACTGAACGGACGTTGCCCAAGTTCTTGGAGTCAGCTCGCATGGAGAACAGAGTTAATAGAAGTAGTACACGTTTGAAATTGTTTTCTGGGTCTGCAAATCGTTTACTTTCTCAG

Protein sequence

MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ

Homology

[Close]

BLAST of CsaV3_1G016980 vs. NCBI nr
Match: XP_004148496.1 (PREDICTED: ribose-phosphate pyrophosphokinase 1 [Cucumis sativus] >KGN60421.1 hypothetical protein Csa_3G904100 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ
Sbjct: 47  MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 101

[Close]

BLAST of CsaV3_1G016980 vs. NCBI nr
Match: XP_008465941.1 (PREDICTED: ribose-phosphate pyrophosphokinase 1-like [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           MSESLRHVNGKPTIPIVTERT PKFLESARME RVNRSSTRLKLFSGSANRLLSQ
Sbjct: 51  MSESLRHVNGKPTIPIVTERTSPKFLESARMEKRVNRSSTRLKLFSGSANRLLSQ 105

[Close]

BLAST of CsaV3_1G016980 vs. NCBI nr
Match: XP_022159419.1 (ribose-phosphate pyrophosphokinase 1 isoform X1 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-18
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           + ESL+HVNGKPTIP+V+ERTLPKFLESARME RVNRSSTRLKLFSGSANRLLSQ
Sbjct: 48  LPESLKHVNGKPTIPVVSERTLPKFLESARMEKRVNRSSTRLKLFSGSANRLLSQ 102

[Close]

BLAST of CsaV3_1G016980 vs. NCBI nr
Match: XP_022952810.1 (ribose-phosphate pyrophosphokinase 1 isoform X1 [Cucurbita moschata] >XP_022971980.1 ribose-phosphate pyrophosphokinase 1 isoform X1 [Cucurbita maxima] >XP_023553898.1 ribose-phosphate pyrophosphokinase 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-18
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           +SESL+HVNGKPTIPIVTERTLPKF+ESARME  VNRSSTRLKLFSGSANRLLSQ
Sbjct: 50  LSESLKHVNGKPTIPIVTERTLPKFMESARMEKIVNRSSTRLKLFSGSANRLLSQ 104

[Close]

BLAST of CsaV3_1G016980 vs. NCBI nr
Match: POE76309.1 (ribose-phosphate pyrophosphokinase 1, chloroplastic [Quercus suber])

HSP 1 Score: 82.0 bits (201), Expect = 6.8e-13
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           +SE L++VNGKP +PI+ ERTLPKFLE+ARME RVN++STRLKLFSG+AN  LSQ
Sbjct: 59  LSEPLKNVNGKPIVPILNERTLPKFLETARMEKRVNQNSTRLKLFSGTANPSLSQ 113

[Close]

BLAST of CsaV3_1G016980 vs. TAIR10
Match: AT2G35390.2 (Phosphoribosyltransferase family protein)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-15
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           M ESL   NG P+IPI+ ERTLPKFLESARME  VNR++TRLKLFSG+AN  L+Q
Sbjct: 52  MPESLNVGNGNPSIPIINERTLPKFLESARMEKSVNRTNTRLKLFSGTANPALAQ 106

[Close]

BLAST of CsaV3_1G016980 vs. TAIR10
Match: AT1G32380.1 (phosphoribosyl pyrophosphate (PRPP) synthase 2)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-09
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 8   VNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           +NG   +PI+ E T+PKF +S+R+E  V+R++T+LKLFSG+AN  LSQ
Sbjct: 56  LNGNARVPIINETTIPKFFDSSRLEKSVSRNNTKLKLFSGTANPALSQ 103

[Close]

BLAST of CsaV3_1G016980 vs. Swiss-Prot
Match: sp|Q42581|KPRS1_ARATH (Ribose-phosphate pyrophosphokinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRS1 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 9.4e-14
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           M ESL   NG P+IPI+ ERTLPKFLESARME  VNR++TRLKLFSG+AN  L+Q
Sbjct: 52  MPESLNVGNGNPSIPIINERTLPKFLESARMEKSVNRTNTRLKLFSGTANPALAQ 106

[Close]

BLAST of CsaV3_1G016980 vs. Swiss-Prot
Match: sp|Q9XG99|KPRS2_SPIOL (Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRS2 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-11
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 3  ESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
          E L+ VNGKP++PI+ E++LPKFL S R+E+ VNRS+TRLKLFSG AN  L++
Sbjct: 46 EPLKLVNGKPSVPILDEQSLPKFLHSKRLESSVNRSNTRLKLFSGLANPALAK 98

[Close]

BLAST of CsaV3_1G016980 vs. Swiss-Prot
Match: sp|Q42583|KPRS2_ARATH (Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRS2 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-08
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 8   VNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           +NG   +PI+ E T+PKF +S+R+E  V+R++T+LKLFSG+AN  LSQ
Sbjct: 56  LNGNARVPIINETTIPKFFDSSRLEKSVSRNNTKLKLFSGTANPALSQ 103

[Close]

BLAST of CsaV3_1G016980 vs. TrEMBL
Match: tr|A0A0A0LK92|A0A0A0LK92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904100 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ
Sbjct: 47  MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 101

[Close]

BLAST of CsaV3_1G016980 vs. TrEMBL
Match: tr|A0A1S3CQ25|A0A1S3CQ25_CUCME (ribose-phosphate pyrophosphokinase 1-like OS=Cucumis melo OX=3656 GN=LOC103503511 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           MSESLRHVNGKPTIPIVTERT PKFLESARME RVNRSSTRLKLFSGSANRLLSQ
Sbjct: 51  MSESLRHVNGKPTIPIVTERTSPKFLESARMEKRVNRSSTRLKLFSGSANRLLSQ 105

[Close]

BLAST of CsaV3_1G016980 vs. TrEMBL
Match: tr|A0A2P4J6G0|A0A2P4J6G0_QUESU (Ribose-phosphate pyrophosphokinase OS=Quercus suber OX=58331 GN=CFP56_25677 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           +SE L++VNGKP +PI+ ERTLPKFLE+ARME RVN++STRLKLFSG+AN  LSQ
Sbjct: 59  LSEPLKNVNGKPIVPILNERTLPKFLETARMEKRVNQNSTRLKLFSGTANPSLSQ 113

[Close]

BLAST of CsaV3_1G016980 vs. TrEMBL
Match: tr|A0A2N9HU06|A0A2N9HU06_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45389 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           +SE  ++VNGKP +PI+ ERTLPKFLE+ARME  VNR+STRLKLFSG+AN  LSQ
Sbjct: 58  LSEPFKNVNGKPIVPILNERTLPKFLETARMEKTVNRTSTRLKLFSGTANPSLSQ 112

[Close]

BLAST of CsaV3_1G016980 vs. TrEMBL
Match: tr|A0A067K353|A0A067K353_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16216 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MSESLRHVNGKPTIPIVTERTLPKFLESARMENRVNRSSTRLKLFSGSANRLLSQ 56
           M+E +   NGKP+IPI+ ERTLPKFLESARME  VNR+STRLKLFSGSAN  LSQ
Sbjct: 55  MAEPVNVGNGKPSIPILNERTLPKFLESARMEKSVNRNSTRLKLFSGSANPALSQ 109

The following BLAST results are available for this feature:

BLAST of CsaV3_1G016980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148496.1	2.0e-20	100.00	PREDICTED: ribose-phosphate pyrophosphokinase 1 [Cucumis sativus] >KGN60421.1 hy...	[more]
XP_008465941.1	4.9e-19	96.36	PREDICTED: ribose-phosphate pyrophosphokinase 1-like [Cucumis melo]	[more]
XP_022159419.1	7.0e-18	89.09	ribose-phosphate pyrophosphokinase 1 isoform X1 [Momordica charantia]	[more]
XP_022952810.1	7.0e-18	90.91	ribose-phosphate pyrophosphokinase 1 isoform X1 [Cucurbita moschata] >XP_0229719...	[more]
POE76309.1	6.8e-13	72.73	ribose-phosphate pyrophosphokinase 1, chloroplastic [Quercus suber]	[more]

BLAST of CsaV3_1G016980 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35390.2	5.2e-15	70.91	Phosphoribosyltransferase family protein	[more]
AT1G32380.1	2.5e-09	54.17	phosphoribosyl pyrophosphate (PRPP) synthase 2	[more]

BLAST of CsaV3_1G016980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q42581\|KPRS1_ARATH	9.4e-14	70.91	Ribose-phosphate pyrophosphokinase 1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q9XG99\|KPRS2_SPIOL	5.7e-11	62.26	Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
sp\|Q42583\|KPRS2_ARATH	4.5e-08	54.17	Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CsaV3_1G016980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LK92\|A0A0A0LK92_CUCSA	1.3e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904100 PE=3 SV=1	[more]
tr\|A0A1S3CQ25\|A0A1S3CQ25_CUCME	3.2e-19	96.36	ribose-phosphate pyrophosphokinase 1-like OS=Cucumis melo OX=3656 GN=LOC10350351...	[more]
tr\|A0A2P4J6G0\|A0A2P4J6G0_QUESU	4.5e-13	72.73	Ribose-phosphate pyrophosphokinase OS=Quercus suber OX=58331 GN=CFP56_25677 PE=3...	[more]
tr\|A0A2N9HU06\|A0A2N9HU06_FAGSY	2.2e-12	70.91	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45389 PE=3 SV=1	[more]
tr\|A0A067K353\|A0A067K353_JATCU	3.8e-12	74.55	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16216 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G016980.1	CsaV3_1G016980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_1G016980	CsaV3_3G049450	Cucumber (Chinese Long) v3	cuccucB019

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G016980	Silver-seed gourd	carcucB0056
CsaV3_1G016980	Silver-seed gourd	carcucB1084
CsaV3_1G016980	Cucurbita moschata (Rifu)	cmocucB0679
CsaV3_1G016980	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G016980	Cucumber (Gy14) v2	cgybcucB103
CsaV3_1G016980	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G016980	Cucumber (Gy14) v1	cgycucB482
CsaV3_1G016980	Cucurbita maxima (Rimu)	cmacucB0241
CsaV3_1G016980	Cucurbita maxima (Rimu)	cmacucB0255
CsaV3_1G016980	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G016980	Cucurbita maxima (Rimu)	cmacucB0603
CsaV3_1G016980	Cucurbita moschata (Rifu)	cmocucB0228
CsaV3_1G016980	Cucurbita moschata (Rifu)	cmocucB0241
CsaV3_1G016980	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G016980	Cucurbita moschata (Rifu)	cmocucB0589
CsaV3_1G016980	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G016980	Cucurbita pepo (Zucchini)	cpecucB0288
CsaV3_1G016980	Cucurbita pepo (Zucchini)	cpecucB0629
CsaV3_1G016980	Cucurbita pepo (Zucchini)	cpecucB0876
CsaV3_1G016980	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G016980	Wild cucumber (PI 183967)	cpicucB127
CsaV3_1G016980	Bottle gourd (USVL1VR-Ls)	cuclsiB066
CsaV3_1G016980	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G016980	Melon (DHL92) v3.5.1	cucmeB014
CsaV3_1G016980	Melon (DHL92) v3.5.1	cucmeB071
CsaV3_1G016980	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G016980	Melon (DHL92) v3.6.1	cucmedB067
CsaV3_1G016980	Watermelon (Charleston Gray)	cucwcgB001
CsaV3_1G016980	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G016980	Watermelon (97103) v1	cucwmB002
CsaV3_1G016980	Watermelon (97103) v1	cucwmB057
CsaV3_1G016980	Watermelon (97103) v2	cucwmbB008
CsaV3_1G016980	Watermelon (97103) v2	cucwmbB091
CsaV3_1G016980	Wax gourd	cucwgoB039
CsaV3_1G016980	Wax gourd	cucwgoB078
CsaV3_1G016980	Cucumber (Chinese Long) v3	cuccucB056