CsaV3_1G015420 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G015420
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPol polyprotein
Locationchr1 : 10960438 .. 10960599 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATACCAGATGGCTTACATGATCCCAAATGGCATAACACCTTTCAAGCTCATATTCGATAAGTCGTGCCAATTCCTAGTTGAGATAGGACATAAAGCTTATTGGGCGGTCATGCAATGCAACCCAACTCTCGCACAAGCCAACAGAGACAAGGTTTCTTGA

mRNA sequence

GCATACCAGATGGCTTACATGATCCCAAATGGCATAACACCTTTCAAGCTCATATTCGATAAGTCGTGCCAATTCCTAGTTGAGATAGGACATAAAGCTTATTGGGCGGTCATGCAATGCAACCCAACTCTCGCACAAGCCAACAGAGACAAGGTTTCTTGA

Coding sequence (CDS)

GCATACCAGATGGCTTACATGATCCCAAATGGCATAACACCTTTCAAGCTCATATTCGATAAGTCGTGCCAATTCCTAGTTGAGATAGGACATAAAGCTTATTGGGCGGTCATGCAATGCAACCCAACTCTCGCACAAGCCAACAGAGACAAGGTTTCTTGA

Protein sequence

AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDKVS
BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_016185592.1 (uncharacterized protein LOC107627254 [Arachis ipaensis] >XP_025635951.1 uncharacterized protein LOC112730053 [Arachis hypogaea])

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY +P G++PF+L++DK+C   VEI HKAYWA+ +CNP+L  A  ++
Sbjct: 58  AYRTAYKMPIGMSPFRLVYDKACHLPVEIEHKAYWAIKECNPSLGGAGIER 108

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_025661708.1 (uncharacterized protein LOC112757331 [Arachis hypogaea])

HSP 1 Score: 68.6 bits (166), Expect = 7.6e-09
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY  P G++PF+L++DK+C   VEI HKAYWA+ +CNP+L  A  ++
Sbjct: 252 AYRTAYKTPIGMSPFRLVYDKACHLPVEIEHKAYWAIKECNPSLGGAGVER 302

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_020987557.1 (uncharacterized protein LOC110275689 [Arachis duranensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQA 48
           AY+ AY +P G++PF+L++ K+C  LVE+ H+AYWAV +CNP+L  A
Sbjct: 58  AYRTAYKMPIGMSPFRLVYGKACHLLVEVEHRAYWAVKECNPSLGGA 104

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_017644156.1 (PREDICTED: uncharacterized protein LOC108484766 [Gossypium arboreum])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY  P G+ P++L+F K+C FLVE+ HKAYWA+ QCN  L  A +++
Sbjct: 58  AYRTAYKGPIGMAPYRLVFGKACHFLVELKHKAYWAIRQCNMELELAGKER 108

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_025652711.1 (uncharacterized protein LOC112748684 [Arachis hypogaea])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY  P G++PF+L++ K+C   VEI HKAYWAV +CNP+L +A  ++
Sbjct: 58  AYRTAYKTPIGMSPFRLMYGKACHLPVEIEHKAYWAVKECNPSLGEAGVER 108

BLAST of CsaV3_1G015420 vs. TrEMBL
Match: tr|A0A1U8J171|A0A1U8J171_GOSHI (uncharacterized protein LOC107902419 OS=Gossypium hirsutum OX=3635 GN=LOC107902419 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-08
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY  P G++P++LIFDK C  LVE+ HKA+WA+ QCN  +  A R +
Sbjct: 54  AYRTAYKGPIGMSPYRLIFDKPCHLLVELEHKAFWAIEQCNMEMESAGRSR 104

BLAST of CsaV3_1G015420 vs. TrEMBL
Match: tr|A0A1U8PCF3|A0A1U8PCF3_GOSHI (uncharacterized protein LOC107957757 OS=Gossypium hirsutum OX=3635 GN=LOC107957757 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANR 50
           AY MAY +P G+TP++L+F K    LV++ HKAYWA+ QCN  L    R
Sbjct: 58  AYWMAYKVPIGMTPYQLVFGKGYHLLVQLEHKAYWAIQQCNMELEPVGR 106

BLAST of CsaV3_1G015420 vs. TrEMBL
Match: tr|A0A2I0KKP6|A0A2I0KKP6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_010557 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
          AY+ AY  P G++P+ LIF K C  LVEI H+A+WAV QCN  L ++++++
Sbjct: 42 AYRTAYKTPIGMSPYHLIFGKLCHLLVEIEHRAFWAVKQCNMDLRRSDKER 92

BLAST of CsaV3_1G015420 vs. TrEMBL
Match: tr|A0A1U8N082|A0A1U8N082_GOSHI (uncharacterized protein LOC107943235 OS=Gossypium hirsutum OX=3635 GN=LOC107943235 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-07
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 1    AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANR 50
            AY+ AY  P G+TP++L+F K+C   VE+ HKAYWA+ QCN  L  A +
Sbjct: 1293 AYRTAYKGPIGMTPYRLVFGKACHLPVELEHKAYWAIRQCNLELEPAGK 1341

BLAST of CsaV3_1G015420 vs. TrEMBL
Match: tr|A0A1U8PY47|A0A1U8PY47_GOSHI (uncharacterized protein LOC107963228 OS=Gossypium hirsutum OX=3635 GN=LOC107963228 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-07
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANR 50
           AY+ AY  P G+TP++L+F K+C   VE+ HKAYW + QCN  L  A +
Sbjct: 73  AYRTAYKSPIGMTPYQLVFGKACHLPVELQHKAYWTIRQCNMELEPAGK 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016185592.14.5e-0950.98uncharacterized protein LOC107627254 [Arachis ipaensis] >XP_025635951.1 uncharac... [more]
XP_025661708.17.6e-0950.98uncharacterized protein LOC112757331 [Arachis hypogaea][more]
XP_020987557.11.7e-0853.19uncharacterized protein LOC110275689 [Arachis duranensis][more]
XP_017644156.12.2e-0850.98PREDICTED: uncharacterized protein LOC108484766 [Gossypium arboreum][more]
XP_025652711.12.2e-0850.98uncharacterized protein LOC112748684 [Arachis hypogaea][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1U8J171|A0A1U8J171_GOSHI3.3e-0850.98uncharacterized protein LOC107902419 OS=Gossypium hirsutum OX=3635 GN=LOC1079024... [more]
tr|A0A1U8PCF3|A0A1U8PCF3_GOSHI2.1e-0751.02uncharacterized protein LOC107957757 OS=Gossypium hirsutum OX=3635 GN=LOC1079577... [more]
tr|A0A2I0KKP6|A0A2I0KKP6_PUNGR2.1e-0749.02Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_010557 PE=4 SV=1[more]
tr|A0A1U8N082|A0A1U8N082_GOSHI3.6e-0751.02uncharacterized protein LOC107943235 OS=Gossypium hirsutum OX=3635 GN=LOC1079432... [more]
tr|A0A1U8PY47|A0A1U8PY47_GOSHI6.2e-0748.98uncharacterized protein LOC107963228 OS=Gossypium hirsutum OX=3635 GN=LOC1079632... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015420.1CsaV3_1G015420.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None