CsaV3_1G015400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10942865 .. 10943164 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGAAAAGGAGAGAAAACTTGCAATCGAAAAGACCATCTGTGGGAAGAAAATCAAAGGTTGTGGCAGTGGATCAGTCGAGAAGGGAAATCGAACATGGAAGATGAAAAAGAAGTCGAAGGAGCTTAAGTTCACAGACCGACGAATAATGAAGAAAGATTGGAGGCTTAAAGCTAAGGAGAACGATTGGCCTCGATGGAAGGAGAAGAAAGTATCACATTGCGGTGGATGGAAGAAGGCAAGAAGGAGAAAAGAAAGTACACCGGCAGCCACATGGTTGGAAAATGGAGGTGTGGTGTAA

mRNA sequence

AACGAAAAGGAGAGAAAACTTGCAATCGAAAAGACCATCTGTGGGAAGAAAATCAAAGGTTGTGGCAGTGGATCAGTCGAGAAGGGAAATCGAACATGGAAGATGAAAAAGAAGTCGAAGGAGCTTAAGTTCACAGACCGACGAATAATGAAGAAAGATTGGAGGCTTAAAGCTAAGGAGAACGATTGGCCTCGATGGAAGGAGAAGAAAGTATCACATTGCGGTGGATGGAAGAAGGCAAGAAGGAGAAAAGAAAGTACACCGGCAGCCACATGGTTGGAAAATGGAGGTGTGGTGTAA

Coding sequence (CDS)

AACGAAAAGGAGAGAAAACTTGCAATCGAAAAGACCATCTGTGGGAAGAAAATCAAAGGTTGTGGCAGTGGATCAGTCGAGAAGGGAAATCGAACATGGAAGATGAAAAAGAAGTCGAAGGAGCTTAAGTTCACAGACCGACGAATAATGAAGAAAGATTGGAGGCTTAAAGCTAAGGAGAACGATTGGCCTCGATGGAAGGAGAAGAAAGTATCACATTGCGGTGGATGGAAGAAGGCAAGAAGGAGAAAAGAAAGTACACCGGCAGCCACATGGTTGGAAAATGGAGGTGTGGTGTAA

Protein sequence

NEKERKLAIEKTICGKKIKGCGSGSVEKGNRTWKMKKKSKELKFTDRRIMKKDWRLKAKENDWPRWKEKKVSHCGGWKKARRRKESTPAATWLENGGVV
Homology
[Close]
BLAST of CsaV3_1G015400 vs. NCBI nr
Match: KGN44462.1 (hypothetical protein Csa_7G298780 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 50 MKKDWRLKAKENDWPRWKEKKVSHCGGWKKARRRKESTPAATWLENGG 98
          MKK W LKAK+N WP+WK K++S   GWK  RRRKESTPAA W +N G
Sbjct: 1  MKKCWWLKAKKNGWPQWK-KEISSRSGWKMERRRKESTPAARWSKNRG 47

[Close]
BLAST of CsaV3_1G015400 vs. TrEMBL
Match: tr|A0A0A0K802|A0A0A0K802_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298780 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 50 MKKDWRLKAKENDWPRWKEKKVSHCGGWKKARRRKESTPAATWLENGG 98
          MKK W LKAK+N WP+WK K++S   GWK  RRRKESTPAA W +N G
Sbjct: 1  MKKCWWLKAKKNGWPQWK-KEISSRSGWKMERRRKESTPAARWSKNRG 47

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44462.12.7e-0764.58hypothetical protein Csa_7G298780 [Cucumis sativus][more]
BLAST of CsaV3_1G015400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K802|A0A0A0K802_CUCSA1.8e-0764.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298780 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015400.1CsaV3_1G015400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..99

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G015400Cucumber (Chinese Long) v3cuccucB053
CsaV3_1G015400Cucumber (Gy14) v2cgybcucB002
CsaV3_1G015400Cucumber (Gy14) v1cgycucB496
CsaV3_1G015400Cucurbita maxima (Rimu)cmacucB0253
CsaV3_1G015400Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G015400Cucurbita maxima (Rimu)cmacucB1004
CsaV3_1G015400Cucurbita moschata (Rifu)cmocucB0239
CsaV3_1G015400Cucurbita moschata (Rifu)cmocucB0472
CsaV3_1G015400Cucurbita pepo (Zucchini)cpecucB0632
CsaV3_1G015400Wild cucumber (PI 183967)cpicucB001
CsaV3_1G015400Wild cucumber (PI 183967)cpicucB318
CsaV3_1G015400Bottle gourd (USVL1VR-Ls)cuclsiB017
CsaV3_1G015400Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G015400Bottle gourd (USVL1VR-Ls)cuclsiB044
CsaV3_1G015400Melon (DHL92) v3.5.1cucmeB016
CsaV3_1G015400Melon (DHL92) v3.5.1cucmeB029
CsaV3_1G015400Melon (DHL92) v3.6.1cucmedB015
CsaV3_1G015400Melon (DHL92) v3.6.1cucmedB025
CsaV3_1G015400Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G015400Watermelon (Charleston Gray)cucwcgB029
CsaV3_1G015400Watermelon (97103) v1cucwmB049
CsaV3_1G015400Watermelon (97103) v1cucwmB064
CsaV3_1G015400Watermelon (97103) v2cucwmbB008
CsaV3_1G015400Wax gourdcucwgoB039