CsaV3_1G015270 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015270
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 10843149 .. 10843460 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCTTACCCTCCACCTCTCTACCAACTAAACAACCCTCATCTCTCCCTCGCGAAGCCAGCAAAGACCCTCTCGCACTTCCAACTGAAGACATTTTTTACCCACCTCCACCAACTGACCCCTTCTTGCCTAAATCACCCATTTTCTCCCAATCAGCGCAGCCCTTGCTTGACTATTTCTTCCAAAATCCAACTCCCTCATCCCTCTTCTACTATGAACACCTCACTTACTCACACCGGTCTCCATCCCAATCCCATCATAGCCAACCTCACTCCCCCAAATACAAAACCCCACAAGGTTCTCCCCTAA

mRNA sequence

ATGACTCCTTACCCTCCACCTCTCTACCAACTAAACAACCCTCATCTCTCCCTCGCGAAGCCAGCAAAGACCCTCTCGCACTTCCAACTGAAGACATTTTTTACCCACCTCCACCAACTGACCCCTTCTTGCCTAAATCACCCATTTTCTCCCAATCAGCGCAGCCCTTGCTTGACTATTTCTTCCAAAATCCAACTCCCTCATCCCTCTTCTACTATGAACACCTCACTTACTCACACCGGTCTCCATCCCAATCCCATCATAGCCAACCTCACTCCCCCAAATACAAAACCCCACAAGGTTCTCCCCTAA

Coding sequence (CDS)

ATGACTCCTTACCCTCCACCTCTCTACCAACTAAACAACCCTCATCTCTCCCTCGCGAAGCCAGCAAAGACCCTCTCGCACTTCCAACTGAAGACATTTTTTACCCACCTCCACCAACTGACCCCTTCTTGCCTAAATCACCCATTTTCTCCCAATCAGCGCAGCCCTTGCTTGACTATTTCTTCCAAAATCCAACTCCCTCATCCCTCTTCTACTATGAACACCTCACTTACTCACACCGGTCTCCATCCCAATCCCATCATAGCCAACCTCACTCCCCCAAATACAAAACCCCACAAGGTTCTCCCCTAA

Protein sequence

MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTISSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP

Homology

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BLAST of CsaV3_1G015270 vs. NCBI nr
Match: KGN64974.1 (hypothetical protein Csa_1G169980 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.3e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60
           MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI
Sbjct: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60

Query: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 104
           SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP
Sbjct: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 103

[Close]

BLAST of CsaV3_1G015270 vs. TrEMBL
Match: tr|A0A0A0LVK0|A0A0A0LVK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169980 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60
           MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI
Sbjct: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60

Query: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 104
           SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP
Sbjct: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 103

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64974.1	3.3e-53	100.00	hypothetical protein Csa_1G169980 [Cucumis sativus]	[more]

BLAST of CsaV3_1G015270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVK0\|A0A0A0LVK0_CUCSA	2.2e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015270.1	CsaV3_1G015270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..92

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015270	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_1G015270	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015270	Cucumber (Gy14) v1	cgycucB496
CsaV3_1G015270	Cucurbita maxima (Rimu)	cmacucB0253
CsaV3_1G015270	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015270	Cucurbita maxima (Rimu)	cmacucB1004
CsaV3_1G015270	Cucurbita moschata (Rifu)	cmocucB0239
CsaV3_1G015270	Cucurbita pepo (Zucchini)	cpecucB0003
CsaV3_1G015270	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015270	Wild cucumber (PI 183967)	cpicucB318
CsaV3_1G015270	Bottle gourd (USVL1VR-Ls)	cuclsiB017
CsaV3_1G015270	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015270	Melon (DHL92) v3.5.1	cucmeB016
CsaV3_1G015270	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015270	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015270	Watermelon (Charleston Gray)	cucwcgB029
CsaV3_1G015270	Watermelon (97103) v1	cucwmB049
CsaV3_1G015270	Watermelon (97103) v1	cucwmB064
CsaV3_1G015270	Watermelon (97103) v2	cucwmbB008