CsaV3_1G015240 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G015240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr1 : 10831303 .. 10831539 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

mRNA sequence

ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

Coding sequence (CDS)

ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

Protein sequence

MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
BLAST of CsaV3_1G015240 vs. NCBI nr
Match: KGN64972.1 (hypothetical protein Csa_1G169960 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60
          MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI
Sbjct: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60

Query: 61 HGKADVADRVQKRFMKQQ 79
          HGKADVADRVQKRFMKQQ
Sbjct: 61 HGKADVADRVQKRFMKQQ 78

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: XP_008455480.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 5.9e-18
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Sbjct: 255 LLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRVQKRFIKQQ 308

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: XP_004144516.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] >KGN43485.1 hypothetical protein Csa_7G041310 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Sbjct: 255 LLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 308

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: XP_022927399.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ 78
           L+GR+GQVEE EKLIMEME+EPD+ LWGA+LSACRIHGK +VADRVQ RFMKQ
Sbjct: 255 LLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMKQ 307

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: XP_023520705.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ 78
           L+GR+GQVEE EKLIMEME+EPD+ LWGA+L ACRIHGKA+VADRVQ RFMKQ
Sbjct: 255 LLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFMKQ 307

BLAST of CsaV3_1G015240 vs. TAIR10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-08
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGE 685

BLAST of CsaV3_1G015240 vs. TAIR10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.2e-08
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

BLAST of CsaV3_1G015240 vs. TAIR10
Match: AT4G01030.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.2e-08
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 8   WKVFDGMHDRNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACR 67
           WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+
Sbjct: 517 WKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCK 576

Query: 68  IHGKADVADRVQKR 74
           IH   ++A+   KR
Sbjct: 577 IHRDLELAEIAWKR 590

BLAST of CsaV3_1G015240 vs. TAIR10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADV 67
           + GR GQ+E   K I  M ++PD  +WGA+LSACR+HG  D+
Sbjct: 597 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638

BLAST of CsaV3_1G015240 vs. TAIR10
Match: AT5G44230.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Sbjct: 430 LLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473

BLAST of CsaV3_1G015240 vs. Swiss-Prot
Match: sp|Q9M9E2|PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-07
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGE 685

BLAST of CsaV3_1G015240 vs. Swiss-Prot
Match: sp|Q9STF3|PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.3e-07
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

BLAST of CsaV3_1G015240 vs. Swiss-Prot
Match: sp|Q9SV26|PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H65 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 9.3e-07
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 8   WKVFDGMHDRNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACR 67
           WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+
Sbjct: 517 WKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCK 576

Query: 68  IHGKADVADRVQKR 74
           IH   ++A+   KR
Sbjct: 577 IHRDLELAEIAWKR 590

BLAST of CsaV3_1G015240 vs. Swiss-Prot
Match: sp|O81767|PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADV 67
           + GR GQ+E   K I  M ++PD  +WGA+LSACR+HG  D+
Sbjct: 597 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638

BLAST of CsaV3_1G015240 vs. Swiss-Prot
Match: sp|Q9FFG8|PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Sbjct: 430 LLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473

BLAST of CsaV3_1G015240 vs. TrEMBL
Match: tr|A0A0A0LVX2|A0A0A0LVX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169960 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60
          MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI
Sbjct: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60

Query: 61 HGKADVADRVQKRFMKQQ 79
          HGKADVADRVQKRFMKQQ
Sbjct: 61 HGKADVADRVQKRFMKQQ 78

BLAST of CsaV3_1G015240 vs. TrEMBL
Match: tr|A0A1S3C0K0|A0A1S3C0K0_CUCME (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495634 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.9e-18
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Sbjct: 255 LLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRVQKRFIKQQ 308

BLAST of CsaV3_1G015240 vs. TrEMBL
Match: tr|A0A0A0K1F7|A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Sbjct: 255 LLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 308

BLAST of CsaV3_1G015240 vs. TrEMBL
Match: tr|A0A2I4GR45|A0A2I4GR45_9ROSI (pentatricopeptide repeat-containing protein At4g16470-like OS=Juglans regia OX=51240 GN=LOC109010111 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-12
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           ++GR GQVEE EKLI+EMEVEPD+ LWGA+L ACRIHGK +VA+RV ++  +++
Sbjct: 255 MLGRAGQVEEAEKLILEMEVEPDEALWGALLGACRIHGKVEVAERVAEKVYEKR 308

BLAST of CsaV3_1G015240 vs. TrEMBL
Match: tr|A0A2P4HV05|A0A2P4HV05_QUESU (Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_03617 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-11
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRF 75
           ++GR+GQVEE EKLI  ME+EPD+ LW A+L+ACRIHGK +VA+RV ++F
Sbjct: 109 MLGRVGQVEEAEKLIFGMEIEPDEALWAALLAACRIHGKLEVAERVAEKF 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64972.19.7e-37100.00hypothetical protein Csa_1G169960 [Cucumis sativus][more]
XP_008455480.15.9e-1885.19PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
XP_004144516.17.7e-1885.19PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
XP_022927399.11.5e-1681.13pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
XP_023520705.11.5e-1681.13pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
Match NameE-valueIdentityDescription
AT1G15510.12.3e-0850.00Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G46790.15.2e-0838.78Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G01030.15.2e-0835.14pentatricopeptide (PPR) repeat-containing protein[more]
AT4G33990.16.8e-0850.00Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G44230.16.8e-0850.00Pentatricopeptide repeat (PPR) superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q9M9E2|PPR45_ARATH4.2e-0750.00Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
sp|Q9STF3|PP265_ARATH9.3e-0738.78Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
sp|Q9SV26|PP297_ARATH9.3e-0735.14Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidop... [more]
sp|O81767|PP348_ARATH1.2e-0650.00Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX... [more]
sp|Q9FFG8|PP417_ARATH1.2e-0650.00Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LVX2|A0A0A0LVX2_CUCSA6.4e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169960 PE=4 SV=1[more]
tr|A0A1S3C0K0|A0A1S3C0K0_CUCME3.9e-1885.19pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
tr|A0A0A0K1F7|A0A0A0K1F7_CUCSA5.1e-1885.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1[more]
tr|A0A2I4GR45|A0A2I4GR45_9ROSI5.5e-1262.96pentatricopeptide repeat-containing protein At4g16470-like OS=Juglans regia OX=5... [more]
tr|A0A2P4HV05|A0A2P4HV05_QUESU4.6e-1164.00Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 G... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015240.1CsaV3_1G015240.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 2..78
e-value: 1.9E-7
score: 32.8
NoneNo IPR availablePANTHERPTHR24015:SF291SUBFAMILY NOT NAMEDcoord: 25..75
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 25..75

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G015240CSPI01G15140Wild cucumber (PI 183967)cpicucB001
CsaV3_1G015240Cla97C01G011160Watermelon (97103) v2cucwmbB008
CsaV3_1G015240BhiUN452G7Wax gourdcucwgoB072
The following gene(s) are paralogous to this gene:

None