CsaV3_1G015230 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G015230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr1 : 10829863 .. 10830048 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACAAGAGATGCGATTTCTTGGACGGCTTTAATTAACGGTCTTTTGAAACATGGTTACTCGGAACAAGCATTGGAGTGCTTCCATCAGATGCAACGCTCGGGTGTCGCTGCTGATTATGTGTCTATAATTGCTGTTCTTGCTGCCTGTGCTGATTTGGGTGCTCTTACTTTGGGGTTGTGG

mRNA sequence

ATGCCTACAAGAGATGCGATTTCTTGGACGGCTTTAATTAACGGTCTTTTGAAACATGGTTACTCGGAACAAGCATTGGAGTGCTTCCATCAGATGCAACGCTCGGGTGTCGCTGCTGATTATGTGTCTATAATTGCTGTTCTTGCTGCCTGTGCTGATTTGGGTGCTCTTACTTTGGGGTTGTGG

Coding sequence (CDS)

ATGCCTACAAGAGATGCGATTTCTTGGACGGCTTTAATTAACGGTCTTTTGAAACATGGTTACTCGGAACAAGCATTGGAGTGCTTCCATCAGATGCAACGCTCGGGTGTCGCTGCTGATTATGTGTCTATAATTGCTGTTCTTGCTGCCTGTGCTGATTTGGGTGCTCTTACTTTGGGGTTGTGG

Protein sequence

MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLW
BLAST of CsaV3_1G015230 vs. NCBI nr
Match: PQQ12257.1 (pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1  MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
          MP RDA+SWT LI G +K G  EQALE F +MQ SGV  DYV++IAV+AACADLG L LG
Sbjct: 1  MPQRDAVSWTVLIGGFVKKGQFEQALEWFREMQLSGVEPDYVTLIAVIAACADLGMLGLG 60

Query: 61 LW 63
          LW
Sbjct: 61 LW 62

BLAST of CsaV3_1G015230 vs. NCBI nr
Match: EMS59351.1 (hypothetical protein TRIUR3_09072 [Triticum urartu])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1  MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
          MP  D +SWTALI+G +K+G  ++A++CFH M   GV  DYV+++A ++ACA++GAL LG
Sbjct: 21 MPDPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLG 80

Query: 61 LW 63
          +W
Sbjct: 81 MW 82

BLAST of CsaV3_1G015230 vs. NCBI nr
Match: BAK01831.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP  D +SWTALI+G +K+G  ++A++CFH M   GV  DYV+++A ++ACA++GAL LG
Sbjct: 163 MPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLG 222

Query: 61  LW 63
           +W
Sbjct: 223 MW 224

BLAST of CsaV3_1G015230 vs. NCBI nr
Match: XP_021823171.1 (putative F-box/LRR-repeat protein 23 [Prunus avium])

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
          MP RDA+SW  LI G +K G  EQALE F +MQ SGV  DYV++I V+AACADLG L + 
Sbjct: 21 MPQRDAVSWIVLIGGFVKKGQFEQALEWFREMQLSGVEPDYVTLIVVIAACADLGTLWIR 80

Query: 61 L 62
          L
Sbjct: 81 L 81

BLAST of CsaV3_1G015230 vs. NCBI nr
Match: PKA53440.1 (Pentatricopeptide repeat-containing protein [Apostasia shenzhenica])

HSP 1 Score: 75.5 bits (184), Expect = 7.2e-11
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1  MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
          MP+RD +SWT+LI+G +K+G  E ALE F +MQ   + +DYV++I V AAC DLGAL  G
Sbjct: 1  MPSRDLVSWTSLIDGCVKNGLPEDALEIFRRMQVERIDSDYVTVIGVAAACGDLGALGHG 60

Query: 61 LW 63
          +W
Sbjct: 61 IW 62

BLAST of CsaV3_1G015230 vs. TAIR10
Match: AT1G13410.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-10
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 4   RDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGL 62
           RD ISW  +INGL  HG+  +AL  FH+M+ SG++ D V+ + VL AC  +G +  GL
Sbjct: 253 RDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGL 310

BLAST of CsaV3_1G015230 vs. TAIR10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-10
Identity = 25/60 (41.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP +D ++W ++ING  ++G  E+AL  + +M   G+  D  +I+++L+ACA +GALTLG
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

BLAST of CsaV3_1G015230 vs. TAIR10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-10
Identity = 22/62 (35.48%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP +  ++W +L++G  ++G +++A++ F+QM+ SG   D  + +++L+ACA  GA++LG
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG 227

Query: 61  LW 63
            W
Sbjct: 228 SW 229

BLAST of CsaV3_1G015230 vs. TAIR10
Match: AT2G03880.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-10
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           M  RD I+W+ +I+GL ++GYS++AL+ F +M+ SG   +Y++I+ VL AC+  G L  G
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

BLAST of CsaV3_1G015230 vs. TAIR10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-09
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 2   PTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGL 61
           P +   SW A+I+G  ++G +E A+  F +MQ+S  + + V+I  +L+ACA LGAL+LG 
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440

Query: 62  W 63
           W
Sbjct: 441 W 441

BLAST of CsaV3_1G015230 vs. Swiss-Prot
Match: sp|A8MQA3|PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-09
Identity = 25/60 (41.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP +D ++W ++ING  ++G  E+AL  + +M   G+  D  +I+++L+ACA +GALTLG
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

BLAST of CsaV3_1G015230 vs. Swiss-Prot
Match: sp|Q9SI53|PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           M  RD I+W+ +I+GL ++GYS++AL+ F +M+ SG   +Y++I+ VL AC+  G L  G
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

BLAST of CsaV3_1G015230 vs. Swiss-Prot
Match: sp|P93011|PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 22/62 (35.48%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP +  ++W +L++G  ++G +++A++ F+QM+ SG   D  + +++L+ACA  GA++LG
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG 227

Query: 61  LW 63
            W
Sbjct: 228 SW 229

BLAST of CsaV3_1G015230 vs. Swiss-Prot
Match: sp|Q9SUH6|PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-08
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 2   PTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGL 61
           P +   SW A+I+G  ++G +E A+  F +MQ+S  + + V+I  +L+ACA LGAL+LG 
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440

Query: 62  W 63
           W
Sbjct: 441 W 441

BLAST of CsaV3_1G015230 vs. Swiss-Prot
Match: sp|Q5G1T1|PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-08
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           M  R+ ISWT++I G  KHG++ + LE F+QM   GV  + V+ +A+L+AC+ +G ++ G
Sbjct: 535 MENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594

BLAST of CsaV3_1G015230 vs. TrEMBL
Match: tr|M7ZI79|M7ZI79_TRIUA (Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_09072 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-12
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1  MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
          MP  D +SWTALI+G +K+G  ++A++CFH M   GV  DYV+++A ++ACA++GAL LG
Sbjct: 21 MPDPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLG 80

Query: 61 LW 63
          +W
Sbjct: 81 MW 82

BLAST of CsaV3_1G015230 vs. TrEMBL
Match: tr|A0A287UVB4|A0A287UVB4_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-12
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP  D +SWTALI+G +K+G  ++A++CFH M   GV  DYV+++A ++ACA++GAL LG
Sbjct: 186 MPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLG 245

Query: 61  LW 63
           +W
Sbjct: 246 MW 247

BLAST of CsaV3_1G015230 vs. TrEMBL
Match: tr|F2E3A9|F2E3A9_HORVV (Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-12
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP  D +SWTALI+G +K+G  ++A++CFH M   GV  DYV+++A ++ACA++GAL LG
Sbjct: 163 MPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLG 222

Query: 61  LW 63
           +W
Sbjct: 223 MW 224

BLAST of CsaV3_1G015230 vs. TrEMBL
Match: tr|A0A1D6ATP7|A0A1D6ATP7_WHEAT (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1   MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
           MP  D +SWTALI+G +K+G  + A+ CFH M   GV  DYV+++A ++ACA+LGAL LG
Sbjct: 141 MPDPDKVSWTALIDGFIKNGRHDVAIYCFHAMLLDGVQPDYVTLVAAISACAELGALGLG 200

Query: 61  LW 63
           +W
Sbjct: 201 MW 202

BLAST of CsaV3_1G015230 vs. TrEMBL
Match: tr|M8BH93|M8BH93_AEGTA (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_21240 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1  MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 60
          MP  D +SWTALI+G +K+G  ++A++CFH M   GV  DYV+++A ++ CA++GAL LG
Sbjct: 21 MPDPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISTCAEVGALGLG 80

Query: 61 LW 63
          +W
Sbjct: 81 MW 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PQQ12257.11.8e-1467.74pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora][more]
EMS59351.11.1e-1151.61hypothetical protein TRIUR3_09072 [Triticum urartu][more]
BAK01831.11.1e-1151.61predicted protein [Hordeum vulgare subsp. vulgare][more]
XP_021823171.15.5e-1160.66putative F-box/LRR-repeat protein 23 [Prunus avium][more]
PKA53440.17.2e-1154.84Pentatricopeptide repeat-containing protein [Apostasia shenzhenica][more]
Match NameE-valueIdentityDescription
AT1G13410.11.5e-1046.55Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G21065.14.3e-1041.67Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G33760.15.7e-1035.48Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G03880.15.7e-1043.33Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G30700.11.6e-0942.62Pentatricopeptide repeat (PPR) superfamily protein[more]
Match NameE-valueIdentityDescription
sp|A8MQA3|PP330_ARATH7.8e-0941.67Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
sp|Q9SI53|PP147_ARATH1.0e-0843.33Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop... [more]
sp|P93011|PP182_ARATH1.0e-0835.48Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
sp|Q9SUH6|PP341_ARATH3.0e-0842.62Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
sp|Q5G1T1|PP272_ARATH5.1e-0841.67Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
tr|M7ZI79|M7ZI79_TRIUA7.3e-1251.61Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_09072 PE=4 SV=1[more]
tr|A0A287UVB4|A0A287UVB4_HORVV7.3e-1251.61Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|F2E3A9|F2E3A9_HORVV7.3e-1251.61Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1[more]
tr|A0A1D6ATP7|A0A1D6ATP7_WHEAT1.6e-1153.23Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1[more]
tr|M8BH93|M8BH93_AEGTA2.1e-1150.00Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_21240 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015230.1CsaV3_1G015230.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..61
e-value: 3.0E-12
score: 48.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 7..40
e-value: 2.7E-9
score: 34.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 5..52
e-value: 2.2E-10
score: 40.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 11.564
NoneNo IPR availablePANTHERPTHR24015:SF778SUBFAMILY NOT NAMEDcoord: 3..62
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..62

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G015230Carg26258Silver-seed gourdcarcucB0000
CsaV3_1G015230Cla97C01G011170Watermelon (97103) v2cucwmbB008
CsaV3_1G015230BhiUN452G8Wax gourdcucwgoB072
The following gene(s) are paralogous to this gene:

None