CsaV3_1G015210 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGATGACAAGTTGGGGCTGTGTATCTCTCTCATTTTGTTGTGTCTTTCAACTGTTTGTTTTTGTACCTCTGACATAAATGATGTCAAAATTCTGAATGATTTCAGAGAGGGCTTGGAAAATCCAGAGCTTCTCAAATGGCCTGATAATGGGGATGACCCATGCGGGATTCCTCCATGGCCTCATGTTTACTGTGCAGGTGATAGAGTTTCTCAGATTTAGGTTCAGGGTTTGGGTCTAAAAGGGCCCTTGCCTCAGAATTTTAACCAGCTCTCTAAGCTCTCCAATTTGGGTCTTTGAATATAATCCTTTCAATGCCGCTGTTGATGAGCTTGCCAAGTCAGTTCAGCTCACAAATCTTTCACTGGTGCAGAGTAATCTGGCTGGACCTCTCCCTGAGTTCTTGGGGACATTGTCATCACTAACAACTTTGAAGCTTTCCTATAACAGGTTAACAGGTCAAATTCCTAAAAGTTTTGGTCAGTTTTTTATGCAGATTTTATGGCTAAATGATCAAGATATAGGAATGACCGGTCCGATTGACGTAATTTCATCAATGTCTTCTTTGACTCAACTATGGCTTCATGGAAACCAGTTCTTAGGGGTTATCCCTCAAAATATTGGGGATCTTAGTATCTTTGTATGA ATGGTGGATGACAAGTTGGGGCTGTGTATCTCTCTCATTTTGTTGTGTCTTTCAACTGTTTGTTTTTGTACCTCTGACATAAATGATGTCAAAATTCTGAATGATTTCAGAGAGGGCTTGGAAAATCCAGAGCTTCTCAAATGGCCTGATAATGGGGATGACCCATGCGGGATTCCTCCATGGCCTCATGTTTACTGTGCAGGTGATAGAGGCCCTTGCCTCAGAATTTTAACCAGCTCTCTAAGCTCTCCAATTTGGGTCTTTGAATATAATCCTTTCAATGCCGCTGTTGATGAGCTTGCCAAGTCAGTTCAGCTCACAAATCTTTCACTGGTGCAGAGTAATCTGGCTGGACCTCTCCCTGAGTTCTTGGGGACATTGTCATCACTAACAACTTTGAAGCTTTCCTATAACAGGTTAACAGGTCAAATTCCTAAAAGTTTTGGTCAGTTTTTTATGCAGATTTTATGGCTAAATGATCAAGATATAGGAATGACCGGTCCGATTGACGTAATTTCATCAATGTCTTCTTTGACTCAACTATGGCTTCATGGAAACCAGTTCTTAGGGGTTATCCCTCAAAATATTGGGGATCTTAGTATCTTTGTATGA ATGGTGGATGACAAGTTGGGGCTGTGTATCTCTCTCATTTTGTTGTGTCTTTCAACTGTTTGTTTTTGTACCTCTGACATAAATGATGTCAAAATTCTGAATGATTTCAGAGAGGGCTTGGAAAATCCAGAGCTTCTCAAATGGCCTGATAATGGGGATGACCCATGCGGGATTCCTCCATGGCCTCATGTTTACTGTGCAGGTGATAGAGGCCCTTGCCTCAGAATTTTAACCAGCTCTCTAAGCTCTCCAATTTGGGTCTTTGAATATAATCCTTTCAATGCCGCTGTTGATGAGCTTGCCAAGTCAGTTCAGCTCACAAATCTTTCACTGGTGCAGAGTAATCTGGCTGGACCTCTCCCTGAGTTCTTGGGGACATTGTCATCACTAACAACTTTGAAGCTTTCCTATAACAGGTTAACAGGTCAAATTCCTAAAAGTTTTGGTCAGTTTTTTATGCAGATTTTATGGCTAAATGATCAAGATATAGGAATGACCGGTCCGATTGACGTAATTTCATCAATGTCTTCTTTGACTCAACTATGGCTTCATGGAAACCAGTTCTTAGGGGTTATCCCTCAAAATATTGGGGATCTTAGTATCTTTGTATGA MVDDKLGLCISLILLCLSTVCFCTSDINDVKILNDFREGLENPELLKWPDNGDDPCGIPPWPHVYCAGDRGPCLRILTSSLSSPIWVFEYNPFNAAVDELAKSVQLTNLSLVQSNLAGPLPEFLGTLSSLTTLKLSYNRLTGQIPKSFGQFFMQILWLNDQDIGMTGPIDVISSMSSLTQLWLHGNQFLGVIPQNIGDLSIFV
BLAST of CsaV3_1G015210 vs. NCBI nr
Match: KGN64970.1 (hypothetical protein Csa_1G169940 [Cucumis sativus]) HSP 1 Score: 364.0 bits (933), Expect = 3.3e-97 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. NCBI nr
Match: EOY33312.1 (Leucine-rich repeat protein kinase family protein [Theobroma cacao]) HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45 Identity = 103/226 (45.58%), Postives = 126/226 (55.75%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. NCBI nr
Match: XP_007015693.2 (PREDICTED: receptor protein kinase TMK1 [Theobroma cacao]) HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45 Identity = 103/226 (45.58%), Postives = 126/226 (55.75%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. NCBI nr
Match: PON51809.1 (Serine/threonine protein kinase [Parasponia andersonii]) HSP 1 Score: 188.3 bits (477), Expect = 2.5e-44 Identity = 109/231 (47.19%), Postives = 132/231 (57.14%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. NCBI nr
Match: XP_015873135.1 (receptor-like kinase TMK3 [Ziziphus jujuba]) HSP 1 Score: 187.2 bits (474), Expect = 5.6e-44 Identity = 109/232 (46.98%), Postives = 130/232 (56.03%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TAIR10
Match: AT5G61240.2 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06 Identity = 44/131 (33.59%), Postives = 62/131 (47.33%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TAIR10
Match: AT1G53730.2 (STRUBBELIG-receptor family 6) HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06 Identity = 38/127 (29.92%), Postives = 54/127 (42.52%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TAIR10
Match: AT1G66150.1 (transmembrane kinase 1) HSP 1 Score: 45.4 bits (106), Expect = 4.7e-05 Identity = 25/66 (37.88%), Postives = 36/66 (54.55%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TAIR10
Match: AT1G29740.1 (Leucine-rich repeat transmembrane protein kinase) HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04 Identity = 23/46 (50.00%), Postives = 28/46 (60.87%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TAIR10
Match: AT3G23750.1 (Leucine-rich repeat protein kinase family protein) HSP 1 Score: 42.7 bits (99), Expect = 3.1e-04 Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. Swiss-Prot
Match: sp|Q9C8M9|SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 4.5e-05 Identity = 38/127 (29.92%), Postives = 54/127 (42.52%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. Swiss-Prot
Match: sp|P43298|TMK1_ARATH (Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 8.6e-04 Identity = 25/66 (37.88%), Postives = 36/66 (54.55%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TrEMBL
Match: tr|A0A0A0LST6|A0A0A0LST6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169940 PE=4 SV=1) HSP 1 Score: 364.0 bits (933), Expect = 2.2e-97 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TrEMBL
Match: tr|A0A061GVW5|A0A061GVW5_THECC (Leucine-rich repeat protein kinase family protein OS=Theobroma cacao OX=3641 GN=TCM_041268 PE=3 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 8.8e-46 Identity = 103/226 (45.58%), Postives = 126/226 (55.75%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TrEMBL
Match: tr|A0A2P5BSM5|A0A2P5BSM5_PARAD (Serine/threonine protein kinase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_213790 PE=3 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44 Identity = 109/231 (47.19%), Postives = 132/231 (57.14%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TrEMBL
Match: tr|A0A1R3K9U5|A0A1R3K9U5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10189 PE=3 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 8.2e-44 Identity = 101/226 (44.69%), Postives = 124/226 (54.87%), Query Frame = 0
BLAST of CsaV3_1G015210 vs. TrEMBL
Match: tr|F6HAB9|F6HAB9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g00580 PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43 Identity = 106/226 (46.90%), Postives = 124/226 (54.87%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|