CsaV3_1G015150 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015150
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S5
Location	chr1 : 10765952 .. 10774817 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGTCCCTTGCTTCCAGCTGCTGCAAGAAGGTATGTCTACTCTCTTCCAAAAACTTTGCAATCCTTTTATTATCAAAAAGAAAAAAGGTTTTGATTTTTGGTTTTATGATTATCTAATTAGCTTCTTTTGAAATATTCTTTCTAGACAACAGGTAAAGTTGAGTTGAACTTTTAATCTTTGACGTTTAAGTTGATGATACACGTTAAACCCTTCCTTTGAATTTGAATTTGTGCCTTAACCAAGTTTACCATAGGAAGGAAAAAAAAGACAAGACAAACAAATTGTATGCTTTGCAATTTGCACCATTTTTATCTTTTCTCAAAGCACATTTGATTTTTTAAAATTAATTTTCCAAAGTTTATGAACAATTTCAAAAACGAACCCTACAAATCTTAACAACTTTTTAATTAATAATTATGGGTTTTGTTGTAGAAGTGTCATTCGTCCCTCCATTTTTTTTAGTCCAAATATAATAAAAACCCTAACAACTTCCATAGAAGAATACACAAAATCCAATTACATCTAACATTTACTTTGTCATCAATCTCCTCCAAGAATCCTACCTTTTCAATTTTCAGATTTATGGGGTCTTGGGATTAAGAGCTAAAAGAAGACAAAAAATAAACGCAAGCAGTACATATAGTAACATAAACTGAATTTTTTTTTGCATATTTCATGGTGGGAGCGATGAGGGTGTAGCTTCAAAGTGGGAGAAAAAAGATAAAACATTAGATAAAATGAAATGAAAAATGAAAGGTTGATATTTGCAAAAGAAGAGAAGTTGCAAAGAAAGAAATAAAAGAAAGATGAAACAATTTTTCTATAAAAAGCAATGAAAATTAAAATTAAAACACATACGTGACATCATAAGAATCTGCCACGAGGCAGAGATGTTAAGGCTGGAGCACTGTAAGAGCAAGATTGTTCAAAACATGTCACAATTCGTATTGCAGAATGCTTTAAAATTCATTTTTCACATTCATATAATTAATAATATCTAACAATTCAAACATTTGGTGCACTGTATGTTAGACTAGAAGGCAAAGCGGCAATAATCACAGGTGGAGCAAGAGGAATAGGAGAGTCCATTGCAAAACACTTCTTTAATCCTGGAGCAAAAGTTGTAATTGCAGACATCCTAGACGATTTAGGTAACTCTCTTTCCAACCATCTCTCCTCTTCATCTACTTCCTTCGTCCACTGCAACGTAACGAAAGAAACCGACGTCGAAAATGTCGTTAACACCGCCGTTTCCAAATACGGAAAGCTAGACATCATGTTCAACAACGCAGGCATTCCAGGAGCTCTCAAGTTCAACATACTCGAAAACGAATATTCAGACTTCCAAAACGTACTCAATGTCAACCTAGTTGGAGCCTTTTTAGGCACAAAACATGCAGCAAAAGCAATGATTCCAGCAGGTCAAGGCAGCATAGTTATAACTGCAAGTGTTTGTTCAAGCATTGGTGGGATTGGGCCATATGCTTACACAAGTTCAAAGCATGGGTTGTTGGGATTAATGAGGAATGCAACTATTGATTTGGGAAGATATGGAATAAAGGTGAATTGTGTGTCACCTCATGTAGTCCCAACTCAAATGACAAGAGAACATTTTAAGTTGAAAGATGGTGATGAGTTTCCTGATGTTTATTCTCATAATTTCAAATGTGGAGATATTTTAAGGAAAGAAGATGTAGCTGAAGTTGGTTTGTATTTAGCAAGTGATGCATCTAGATTTGTTAGTGGACATAACTTTGTTCTTGATGGAGGCTTCACTGCAGGAAACCAAGGTCTTTGCTCCTATCAACAATTTGGTAACTGAAATATAAATAATTATTAAACCCAAAGAACAAAAGTTGGTCCTTTTCAAAATTCTCTAATTCCTATAGTTTCCTTTTTGTGTGGTTTTATGTCCCAAGTAAGTCATTACTACTTGTTTTAGTTGTACCTTTCATTTCTCTATGTTTGACATTATTATAAGAATATCCAATAATTATAAAAGCTTTGGGTTCTTGAAGTACTGTTTTTAAGTTTATTGCATACTCTTTTTAATAAACGTATTTTAATATTTTTAGGGCACAACTGCATTTTGTCATCTCCCTTTAATTTAAAACTAATAATTAGATATATAACCATGATTTTTTTATAAAATGATAAATATAGTATAACCTATCAATATGATAAACTCTATTGTTGATATATAAACACTTATCAATACGGTAAACTGAATGGTTGATAAACACCTATTAATGAAATAGATATATAATGCTTGCTAGACTTCTGTTAGGCGTAAAGTCTATGTTACTAATATAGGTTTTAAGAGTTGGATTTAAAGTTGGATGTTATTCATAATTATTTTAAGAAACAATTTTTTTATATATCTGCTAATAGTTTGGTTTGGGATGATTGTTGTATCTAAAGTATAAAGTACTCATGAAAATAGCTCTCTTTACAAATGAATTGACATACCTATGAGTACATTCAAGATCAGTTTTTTCTAATATTTAATTATAGTTTTTATCCATAAATAAATTATTAAAGAGAGATTAAATCTTTTATATATGAAACTTTCTTTCACATGTTTTCACATATTTGACTTAATTTGATCAAATTATTACTACAAAAATTTTAGTGACGCAAGTAATTTTTGTCGGTAAAAGATCGTGTATAGCAATGCATAGAAAATGTGTTACAAAATATTATCATTAGCAACACATTTTTAATATGCGCCACTAAAAGAATTTGTAACAAAGCAATAATGCCCCTAAATATTAAATAATTTTAGCAAGAAACATAGATGAGAAATTGGCAAAAGTAGTAAACTTTTGGTTTTCGTTTTTAAGAGTAGCACATTTTTTTAAAACTCGTAAAAGCGTTTTTCTCAGTCAATCTTGAGCGAGATCGATCACTAAAATTTTCTAAAATATTAAAAAAATTCAACTATCGATTGTTTTGGGTTTTTTCGGTTCATCTTGTGTAAACTTTGAATCTTATTGAACTTAGATTATCTTTCCAAGAGTTCGGAAGGATTAGTTTTAAGTGGAGTTAGGACAAGAAAGTAAGCTTGTGAAGTGATATTTTTATGTATGTGGTGGGAGGACGAAAGAAGAAAAATTAAGAAGTAATAATTTTGAAAGATAAAGAGAAAAGTTAGGTAGGAAATAAGAGAAAATTTGGCTAAGTATGAAAGTTGGGTATTTGACTATGGTTAAGCGTTAGAGGTTTTGTTGAGGTGCCAGAAGGGAAGGAAAACCTCTAAAGAGATTAGTGTGGGCAAATAGGGTGCTTGCTAGGCGGCAAAAGAAGAGAAGATAACCTCCCTCTTAAGATGTTATCTTTGCGTTTTGATGTGTGGTTGAGAAGGACAGAGTGAACCTCTAAAAGTTGGCGTTTTGGTTGCGTTTAGGACAAAAGAAGGCTTGTTTAGTGGTTAGCTAGGCGTTTGGAGATTTGCAGCAAAGCTAGAGAGGTTAGTTGGATGTTAGGACTTGGCGAAGAGCATGACATGGGAGAAGGACATGGAGGTTAGCTATGCAAAGTGAGGTTAGAGGTCATGCAATGAGAGATTAGTTGGTCATTAGGCTAGGCATTTGGCATGTCCTTGACACTTTGGAGTTTTGATTAGGTGAGGAGAGGAAAAGGTGGATTTGTTCAAGTGGAGTCCAGGTGTCATGTGTATGCATAGATTAAATTTCGGCTAAAGGAGGTGTCAATAAAGTTTCATGCAAGCTCCATTATTAATAGGTTACTTCAGACGTGCATTTCTCTCAAACCACTCGTGCATTTTGAGTGAAATTACTCTCAAAATATTCTAAATTGAGTCTATATATTTTCTATATTGGGGCTACCGATTTAATTTGAGTAACGAAAGATTGATTTTAAGTTGAAGAAAGTGAGGAAGGTCGGAATTCAGGTGATTCTGAGCAAGGTGGACTTCTAGAGAGCTGTAAAGTTCATCCGTTGAAATTTGAAACTGAAATATTGAGGTGAGAAAGACAATTTTCAACAACTTTATCGAAGAAAGTATTTTCATTTGAGTTATGCATTTACAGTTACTAAGCTCTAAATTGGAAATAAGGTTCTGGCCGAAAATGAGTTTATGAGCAATAGAGGTGGTTGGCCAAGAGACAAGGTAAGATTAGGCGAGTTGGGCATGACGTTTTAGATCAGAGAGATTATTAGATGAGGAGGTTGGCGTTGTATGCACGACCTATGCGCAAGACGCACACACGACAAGAAGGCACGTTAGGAGGGCTGCACGAGATGTCAGACACGGGGGCCAAGTGAGGCGCGGTGTGTCTGTGCGCAGGCATGCCCCGGGCGCGTGGTAAACCTCTTGTGAGGTTAGCGCGAGCAGCCCAGCACGCACGGGCAACCCCTACGCGCCAGCCGTGTCAAAGCGATGTTTTAAAGTTGTTTTTGATATTTTGAAAATTTTTAAGTAAATTAAATGAAAGTTGAAAGTTGTTTCTCATTATTTCAGGTCAAGAGAAGAACAAACACATTTACAGACCAAAGTGTAAGCTACTATTTGTGAGTGATAAAGTGAAAGTTGATTTTTTAATTTAATTATCTATCAAATGTTTTAAGCATGTTTTGATGTATGAATTACTTGAGTTTACTGTTTTAGCAAAATGTTTCCAAAGCATGAGATTTAAAATGTTTGACAAGTATTTAAGTAAAGAATAATTTTAGAATGTTTTAGACTATACCATACGATGTATATATATAGCAACCCTTTCGGGGGATATGACATGTGCACAAAGGTTCTTATGATAGAGGTTATCATTAAATACCTATGTATTCTCTCATTGAGAGATTTCTGAGAAGAGGGTGCTACATTTCTTGAGATTACCCACCTCATTGTAGCTATAACAAGATGAGGACTGTTAGAGGGTCCTCCTTGTGTTTCATATGGTATAGCAAGTAAACTGACTTACTATGTTGAAGACGAAGTTTAAAACTAAATTGTTTTTTTTCTTTTCAAATATGCATGTTTTAATAAAAACCATCACTCATTGTGCTATTTTAGCTCATTCTTTCCAAATGTTCTTCCCACTTTTCAGGTAGTGGTCGTGATCTGCAAGCCTGACTGTTGTCTTCAAGTTTGTTGTACAAAATTTGTGATTAGTTTAGTTACTGAGGGTCAATTTTAGTTCAAACCTTATCATGTACATGGTTTTGCATAAGGTTAAGTGCAGTTGTTAAATTTTTGTTTGGTCTGTAAGTATAGTTTGTAATCAATGGCATCTAGCCTCGCCTACTTGTTAAAAAGTATAAGAAGTTGGTGAAGTTTGTTTCTCTTAATTTTCGTTGCATAAGTTTTAAATTATTTCGATTAGGCCTTTTGGTACACATTTTCTATTTGTTTCTTGGGATTTGCTTAAGCTTTCTTCCCATTTGAATCAAGTGTCTTATGTTTCACTTGCTCTTGTGGCTTGAGTAAGAAGAATTTACAACCATGGCTTCACTGCTGCTAGAGACATTTCAGGGGTAGTCTTTCTTGAACTAAGTTTAATTTTCTTCAACAAATTTTGCATATGTGATATCATCATATAAAGTTAGGAAATGTTTGAACTTTAACCATTTCTTTTATGTCAAACCGTAGTCCTCTTATAAACTGGACAATTAGGTATTTTTCATTCTCCATCAGATTTGTTCTAGCTCCTAGTTAGTGGAACTCTTCAATGTATTCAACCATAGATCGAGTCCCTTGTTGAAAACTTTGATATTGGTTGTATTGAGTTTGTTCATAGTTAGGTGGAAGGAACCTAGCTTTCATTAATTTCCTCATTTTCTCCCAAGAGAATTTAGTTTGAGTTAATACACAAAAGCTTAAAGTCTATTAGAATGGGACATTTGTAAACAAAGGAGGTGGACTCCTTTTATAGGCTTAGAGTCATCCACCTTTCTACAAAATAGCTAACGTGGGATTCCCACATCCCACATCTTGCCAAATCCGATTGAACTAACATAAATTTCTTTAGTTCATTTACAGAAAAAAATTAAAGCAGAATTTGATATCCTTTCATTCATCATCTTCTTGTCGGTAATAAGTTTAATTTCATCGTGGGTAGAGAAAAATAAAAAGAAATCAGTATTTACATATACAGAACAAAACGCAAAAATATTTACAGCACATATAACAAAAAAAAAAATGAAGTCACTATTGTTTTTCCATAAATTCTGGATTTTTCCTTGTTGGTTTTGAATTTCTTGGAACGAGTGTTGAATTCCTGCACATCTTCTTCATATTCCCACTTCTTCTTATTCGCAGTTTTTCATCTTCTCTTTTAGAATTTCTTACTTGTTCGTCATATCATGTCATTTTTTTTTTCTTTTTTTTTCACTACAAGATCGTGTACCAAAATCTAAACGATCAGTCAACTATCTGAGATAGATAGAGATAAATCACTATCACTATCTATCCCACATACATAAGCAATAGATCTAAATGATCGTTTACGAAGATCCAAGCTATCGTTTGCCAAGATCATTTAGATTTGGTATAAGATTGTGTACCAATATCATGTACCAAAACCGTTTAGATTTTGTATAAGATTATGTACCAAGATTGTTTAGAGATAGACCACTCTCAATGTCTATCCCAAATAGATAAGTGATAGATTCAAATGATTGTTTACTAAAATCTGAACGATCGTGTACCAATATCTAAATGACCTTTTATACTATATTATACGATCGTTTTAACTAGAAGCTTTTCATGAGCATGTGTGGTCGATTAATCGAGAGATATTTTTGTTATTTCACTTTGTGGGTTTTTTCCTTTCTCAAAATTGTTCTATATACCGTATAAATATTTTTTCACTTTGTTTCATAGTAAAAAAAGTTCCTTGTTATAATCTAAAATTTTACCATATTTTATAAATATTTTAAAAATTTTGCTACTTATGATCATTTAACACAAAAATACATGTAAAAAAGAATAAACTAAATAATTTGTTACTAAGATCGAAAGGTAAATGGCATTCGAAGAAGAAGAAGAAGAAGAAGAAAGAGGTTGGGCAAATAAGAGATACCAAAACCGACTGGTTCGGTTTAAGAATTCGTTCATATCCAACCGAACCGGTTTTTTTTTATATATATATAAGCCTTAGGGTTTCTTTCTTCAACACTTCAGCCGCATCGTTCCTCTTCTCTAGGGCCATAGAGAGACCAGTGCGCCATTGCAGCGCTTAATAACTTCCCCTTCACTCTCTTCATCCTTTGCTTCACTACTACGGTAAGTCGCTCTTACCAGTTCTAGTCTTTTGCTCTTTTGTTATTCTTTTCCTTTGGAGTTTTTTCACTGTTGTAGTTTACTTTGATGCCCAAATTCTATCACGTTTTCAGCTTGTGTTTCGTTTCGTTGCCAGTAGCTGGTGGGTTTTTGAGTTTTGTTGTTTTTGATATGTGCTGTAATTGATTGAAATATTAGAATACTCTAGATCTGTTAACGTTACTCTTGCTCATTTGAGTACCATTGTACTTGTTTATATCTATTTATGAAGTCCTGTTTTTATTAGTCTATTGTTGGTGAGTTGAATAGCAAGAAGTTGATTTTTATCTGTCTAATTTTTTAGTTTTTACAACTTCTATGGAGATGCTTGATTTCATTGCTAATCCGTTAATTTATCTTGGTTGTTTATTTTCCTCTCTTTCTGTTTTTACTCTCATTAAGTTCTTCATTAGGAATGGGGAATGTGGTTAGTTTTCTTTAAGGGAAGGCGAGGATTGGCGTTGTTCAGTTTCCCTGCTTTTATAATTTTGTCCCTGGAATAATTGTATTTGGCTTCTCTTTGCAACTTTTATGCCGCAACCTTCTCTTGTGATTCCAATTTTTAGGTAAATTTTGGATAATAGATTACCTCAACTGATTGATCCTTCCTATCAATTGGTTTCTTGGGTGTTCTCTCTCTGCCTTGGTGTGACAGATGGGAAAATGTGGAGTTCTTGATCGGAAATGGTCCTATTCTTATGATTTTCTCATTTTATCAACACATCTATGATCTATTTCTGCTGCTCCCATTTACATTTGAAATGTAAGAGGTTTTAAATTTCAAAACGTTGTGTGTATTATTTTAGGAAAATGCAGCTTTTTAATCTAAGACTAGAGAGTTAAGCCATCTAATTTGCGGATGGGGAATATGAAAATGATTAGGTATCTGGATATGCATAACATGTTTGATCGAATTAGTGCTCAATTTCTTTGTGTAAATAAATGGTCTACAGGAATAATGGCTGTTGAAGTTGATGTGGCAAGCCAGGAACTGACCCAGTCTCATCACGATGTGAAGCTGTTCAACCGCTGGACCTTTGATGATGTCCAGGTGAACGACATCTCTCTGGTTGATTACGTTGGGGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCTGGGAGGTATTCTGTCAAGCGCTTTCGGAAAGCTCAGTGCCCAATTGTGGAGAGGCTCACAAATTCACTTATGATGCATGGTAGAAACAACGGGAAGAAGCTTATGGCAGTCCGGATTATTAAGCATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTTATTGTTGACGCCGTTGTTAACAGTGGGCCACGTGAAGATGCTACCCGAATCGGTTCAGCCGGTGTTGTTAGGCGTCAGGCTGTGGATATATCCCCTCTGCGTCGTGTTAACCAAGCAATCTATCTCCTTACGACTGGTGCTCGCGAGGCTGCTTTCAGAAATATCAAGACAATTGCAGAATGCTTAGCTGATGAACTTATTAATGCAGCAAAGGGCTCTTCAAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAGAGAGTTGCAAAGGCTAATCGTTGA

mRNA sequence

ATGGGCGTCCCTTGCTTCCAGCTGCTGCAAGAAGAAGGCAAAGCGGCAATAATCACAGGTGGAGCAAGAGGAATAGGAGAGTCCATTGCAAAACACTTCTTTAATCCTGGAGCAAAAGTTGTAATTGCAGACATCCTAGACGATTTAGGTAACTCTCTTTCCAACCATCTCTCCTCTTCATCTACTTCCTTCGTCCACTGCAACGTAACGAAAGAAACCGACGTCGAAAATGTCGTTAACACCGCCGTTTCCAAATACGGAAAGCTAGACATCATGTTCAACAACGCAGGCATTCCAGGAGCTCTCAAGTTCAACATACTCGAAAACGAATATTCAGACTTCCAAAACGTACTCAATGTCAACCTAGTTGGAGCCTTTTTAGGCACAAAACATGCAGCAAAAGCAATGATTCCAGCAGGTCAAGGCAGCATAGTTATAACTGCAAGTGTTTGTTCAAGCATTGGTGGGATTGGGCCATATGCTTACACAAGTTCAAAGCATGGGTTGTTGGGATTAATGAGGAATGCAACTATTGATTTGGGAAGATATGGAATAAAGGTGAATTGTGTGTCACCTCATGTAGTCCCAACTCAAATGACAAGAGAACATTTTAAGTTGAAAGATGGTGATGAGTTTCCTGATGTTTATTCTCATAATTTCAAATGTGGAGATATTTTAAGGAAAGAAGATGTAGCTGAAGTTGGTTTGTATTTAGCAAGTGATGCATCTAGATTTGTTAGTGGACATAACTTTGTTCTTGATGGAGGCTTCACTGCAGGAAACCAAGGTCTTTGCTCCTATCAACAATTTGGAATAATGGCTGTTGAAGTTGATGTGGCAAGCCAGGAACTGACCCAGTCTCATCACGATGTGAAGCTGTTCAACCGCTGGACCTTTGATGATGTCCAGGTGAACGACATCTCTCTGGTTGATTACGTTGGGGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCTGGGAGGTATTCTGTCAAGCGCTTTCGGAAAGCTCAGTGCCCAATTGTGGAGAGGCTCACAAATTCACTTATGATGCATGGTAGAAACAACGGGAAGAAGCTTATGGCAGTCCGGATTATTAAGCATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTTATTGTTGACGCCGTTGTTAACAGTGGGCCACGTGAAGATGCTACCCGAATCGGTTCAGCCGGTGTTGTTAGGCGTCAGGCTGTGGATATATCCCCTCTGCGTCGTGTTAACCAAGCAATCTATCTCCTTACGACTGGTGCTCGCGAGGCTGCTTTCAGAAATATCAAGACAATTGCAGAATGCTTAGCTGATGAACTTATTAATGCAGCAAAGGGCTCTTCAAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAGAGAGTTGCAAAGGCTAATCGTTGA

Coding sequence (CDS)

ATGGGCGTCCCTTGCTTCCAGCTGCTGCAAGAAGAAGGCAAAGCGGCAATAATCACAGGTGGAGCAAGAGGAATAGGAGAGTCCATTGCAAAACACTTCTTTAATCCTGGAGCAAAAGTTGTAATTGCAGACATCCTAGACGATTTAGGTAACTCTCTTTCCAACCATCTCTCCTCTTCATCTACTTCCTTCGTCCACTGCAACGTAACGAAAGAAACCGACGTCGAAAATGTCGTTAACACCGCCGTTTCCAAATACGGAAAGCTAGACATCATGTTCAACAACGCAGGCATTCCAGGAGCTCTCAAGTTCAACATACTCGAAAACGAATATTCAGACTTCCAAAACGTACTCAATGTCAACCTAGTTGGAGCCTTTTTAGGCACAAAACATGCAGCAAAAGCAATGATTCCAGCAGGTCAAGGCAGCATAGTTATAACTGCAAGTGTTTGTTCAAGCATTGGTGGGATTGGGCCATATGCTTACACAAGTTCAAAGCATGGGTTGTTGGGATTAATGAGGAATGCAACTATTGATTTGGGAAGATATGGAATAAAGGTGAATTGTGTGTCACCTCATGTAGTCCCAACTCAAATGACAAGAGAACATTTTAAGTTGAAAGATGGTGATGAGTTTCCTGATGTTTATTCTCATAATTTCAAATGTGGAGATATTTTAAGGAAAGAAGATGTAGCTGAAGTTGGTTTGTATTTAGCAAGTGATGCATCTAGATTTGTTAGTGGACATAACTTTGTTCTTGATGGAGGCTTCACTGCAGGAAACCAAGGTCTTTGCTCCTATCAACAATTTGGAATAATGGCTGTTGAAGTTGATGTGGCAAGCCAGGAACTGACCCAGTCTCATCACGATGTGAAGCTGTTCAACCGCTGGACCTTTGATGATGTCCAGGTGAACGACATCTCTCTGGTTGATTACGTTGGGGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCTGGGAGGTATTCTGTCAAGCGCTTTCGGAAAGCTCAGTGCCCAATTGTGGAGAGGCTCACAAATTCACTTATGATGCATGGTAGAAACAACGGGAAGAAGCTTATGGCAGTCCGGATTATTAAGCATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTTATTGTTGACGCCGTTGTTAACAGTGGGCCACGTGAAGATGCTACCCGAATCGGTTCAGCCGGTGTTGTTAGGCGTCAGGCTGTGGATATATCCCCTCTGCGTCGTGTTAACCAAGCAATCTATCTCCTTACGACTGGTGCTCGCGAGGCTGCTTTCAGAAATATCAAGACAATTGCAGAATGCTTAGCTGATGAACTTATTAATGCAGCAAAGGGCTCTTCAAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAGAGAGTTGCAAAGGCTAATCGTTGA

Protein sequence

MGVPCFQLLQEEGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYGIKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASRFVSGHNFVLDGGFTAGNQGLCSYQQFGIMAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR

Homology

[Close]

BLAST of CsaV3_1G015150 vs. NCBI nr
Match: XP_004139590.1 (PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus] >KGN64963.1 hypothetical protein Csa_1G168890 [Cucumis sativus])

HSP 1 Score: 527.7 bits (1358), Expect = 4.1e-146
Identity = 264/273 (96.70%), Postives = 264/273 (96.70%), Query Frame = 0


Query: 1   MGVPCFQLLQE--EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLS 60
           MGVP         EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLS
Sbjct: 1   MGVPLLPAAARRLEGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLS 60

Query: 61  SSSTSFVHCNVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVL 120
           SSSTSFVHCNVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVL
Sbjct: 61  SSSTSFVHCNVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVL 120

Query: 121 NVNLVGAFLGTKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATI 180
           NVNLVGAFLGTKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATI
Sbjct: 121 NVNLVGAFLGTKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATI 180

Query: 181 DLGRYGIKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYL 240
           DLGRYGIKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYL
Sbjct: 181 DLGRYGIKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYL 240

Query: 241 ASDASRFVSGHNFVLDGGFTAGNQGLCSYQQFG 272
           ASDASRFVSGHNFVLDGGFTAGNQGLCSYQQFG
Sbjct: 241 ASDASRFVSGHNFVLDGGFTAGNQGLCSYQQFG 273

[Close]

BLAST of CsaV3_1G015150 vs. NCBI nr
Match: XP_022927564.1 (secoisolariciresinol dehydrogenase-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 426.8 bits (1096), Expect = 9.8e-116
Identity = 209/257 (81.32%), Postives = 231/257 (89.88%), Query Frame = 0


Query: 12  EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNVTK 71
           EGK A+ITG ARGIGES AK FF  GAKVV+ADILDD+G+SLS HL SSS+SFVHC+VTK
Sbjct: 14  EGKVAVITGAARGIGESTAKLFFKHGAKVVLADILDDVGHSLSRHLCSSSSSFVHCDVTK 73

Query: 72  ETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKH 131
           E D+EN VNTA+SKYGKLDIM NNAGI G LKFNILENE SDFQ VLNVNL+GAFLGTKH
Sbjct: 74  EKDIENAVNTAISKYGKLDIMLNNAGISGTLKFNILENELSDFQKVLNVNLLGAFLGTKH 133

Query: 132 AAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYGIKVNCVS 191
           AAKAMIPA QGSI+I AS CS IGGIGPYAYTSSKHGLLGLM+NAT+DLGRYGI+VNCVS
Sbjct: 134 AAKAMIPARQGSIIIMASGCSIIGGIGPYAYTSSKHGLLGLMKNATVDLGRYGIRVNCVS 193

Query: 192 PHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASRFVSGHNF 251
           PHVVP+QMTR+ FKL+DGDEFP+VYSH FKCGDILR ED+AE  LYLASDASRFVSGHN 
Sbjct: 194 PHVVPSQMTRDLFKLEDGDEFPNVYSH-FKCGDILRPEDIAEAALYLASDASRFVSGHNL 253

Query: 252 VLDGGFTAGNQGLCSYQ 269
           ++DGGFT+ NQGLCSY+
Sbjct: 254 IVDGGFTSANQGLCSYE 269

[Close]

BLAST of CsaV3_1G015150 vs. NCBI nr
Match: XP_022927566.1 (secoisolariciresinol dehydrogenase-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 426.8 bits (1096), Expect = 9.8e-116
Identity = 209/257 (81.32%), Postives = 231/257 (89.88%), Query Frame = 0


Query: 12  EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNVTK 71
           EGK A+ITG ARGIGES AK FF  GAKVV+ADILDD+G+SLS HL SSS+SFVHC+VTK
Sbjct: 14  EGKVAVITGAARGIGESTAKLFFKHGAKVVLADILDDVGHSLSRHLCSSSSSFVHCDVTK 73

Query: 72  ETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKH 131
           E D+EN VNTA+SKYGKLDIM NNAGI G LKFNILENE SDFQ VLNVNL+GAFLGTKH
Sbjct: 74  EKDIENAVNTAISKYGKLDIMLNNAGISGTLKFNILENELSDFQKVLNVNLLGAFLGTKH 133

Query: 132 AAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYGIKVNCVS 191
           AAKAMIPA QGSI+I AS CS IGGIGPYAYTSSKHGLLGLM+NAT+DLGRYGI+VNCVS
Sbjct: 134 AAKAMIPARQGSIIIMASGCSIIGGIGPYAYTSSKHGLLGLMKNATVDLGRYGIRVNCVS 193

Query: 192 PHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASRFVSGHNF 251
           PHVVP+QMTR+ FKL+DGDEFP+VYSH FKCGDILR ED+AE  LYLASDASRFVSGHN 
Sbjct: 194 PHVVPSQMTRDLFKLEDGDEFPNVYSH-FKCGDILRPEDIAEAALYLASDASRFVSGHNL 253

Query: 252 VLDGGFTAGNQGLCSYQ 269
           ++DGGFT+ NQGLCSY+
Sbjct: 254 IVDGGFTSANQGLCSYE 269

[Close]

BLAST of CsaV3_1G015150 vs. NCBI nr
Match: XP_022927565.1 (secoisolariciresinol dehydrogenase-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 426.8 bits (1096), Expect = 9.8e-116
Identity = 209/257 (81.32%), Postives = 231/257 (89.88%), Query Frame = 0


Query: 12  EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNVTK 71
           EGK A+ITG ARGIGES AK FF  GAKVV+ADILDD+G+SLS HL SSS+SFVHC+VTK
Sbjct: 14  EGKVAVITGAARGIGESTAKLFFKHGAKVVLADILDDVGHSLSRHLCSSSSSFVHCDVTK 73

Query: 72  ETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKH 131
           E D+EN VNTA+SKYGKLDIM NNAGI G LKFNILENE SDFQ VLNVNL+GAFLGTKH
Sbjct: 74  EKDIENAVNTAISKYGKLDIMLNNAGISGTLKFNILENELSDFQKVLNVNLLGAFLGTKH 133

Query: 132 AAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYGIKVNCVS 191
           AAKAMIPA QGSI+I AS CS IGGIGPYAYTSSKHGLLGLM+NAT+DLGRYGI+VNCVS
Sbjct: 134 AAKAMIPARQGSIIIMASGCSIIGGIGPYAYTSSKHGLLGLMKNATVDLGRYGIRVNCVS 193

Query: 192 PHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASRFVSGHNF 251
           PHVVP+QMTR+ FKL+DGDEFP+VYSH FKCGDILR ED+AE  LYLASDASRFVSGHN 
Sbjct: 194 PHVVPSQMTRDLFKLEDGDEFPNVYSH-FKCGDILRPEDIAEAALYLASDASRFVSGHNL 253

Query: 252 VLDGGFTAGNQGLCSYQ 269
           ++DGGFT+ NQGLCSY+
Sbjct: 254 IVDGGFTSANQGLCSYE 269

[Close]

BLAST of CsaV3_1G015150 vs. NCBI nr
Match: XP_022973162.1 (secoisolariciresinol dehydrogenase-like [Cucurbita maxima])

HSP 1 Score: 425.6 bits (1093), Expect = 2.2e-115
Identity = 206/257 (80.16%), Postives = 231/257 (89.88%), Query Frame = 0


Query: 12  EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNVTK 71
           EGK A+ITG ARGIGES AK FF  GAKVV+ADILDD+G+SLS HL SSS+SFVHC+VTK
Sbjct: 14  EGKVAVITGAARGIGESTAKLFFKHGAKVVLADILDDVGHSLSRHLCSSSSSFVHCDVTK 73

Query: 72  ETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKH 131
           E D+EN VNTA++KYGKLDIM NNAGI G LKFN LENE SDFQNVLNVNL+G FLGTKH
Sbjct: 74  EKDIENAVNTAIAKYGKLDIMLNNAGISGTLKFNFLENESSDFQNVLNVNLLGTFLGTKH 133

Query: 132 AAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYGIKVNCVS 191
           AA+AMIPA QGSI++TASVCS IGGIGPY YTSSKHG+LGLM+NAT+DLGRYGI+VNCVS
Sbjct: 134 AARAMIPARQGSIIMTASVCSVIGGIGPYGYTSSKHGVLGLMKNATVDLGRYGIRVNCVS 193

Query: 192 PHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASRFVSGHNF 251
           PHVVP+QMTR+ FKL+DGDEFP+VYSH FKCGDILR ED+AE  LYLASDASRFVSGHN 
Sbjct: 194 PHVVPSQMTRDLFKLEDGDEFPNVYSH-FKCGDILRAEDIAEAALYLASDASRFVSGHNL 253

Query: 252 VLDGGFTAGNQGLCSYQ 269
           ++DGGFT+ NQGLCSYQ
Sbjct: 254 IVDGGFTSANQGLCSYQ 269

[Close]

BLAST of CsaV3_1G015150 vs. TAIR10
Match: AT2G37270.1 (ribosomal protein 5B)

HSP 1 Score: 358.6 bits (919), Expect = 6.0e-99
Identity = 180/207 (86.96%), Postives = 195/207 (94.20%), Query Frame = 0


Query: 273 MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 332
           MA   ++ ++   Q  ++VKLFNRW+FDDV V DISLVDY+GV P+KHAT+VPHTAGRYS
Sbjct: 1   MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 60

Query: 333 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 392
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 393 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 452
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 180

Query: 453 INAAKGSSNSYAIKKKDEIERVAKANR 480
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_1G015150 vs. TAIR10
Match: AT3G11940.1 (ribosomal protein 5A)

HSP 1 Score: 355.1 bits (910), Expect = 6.6e-98
Identity = 180/207 (86.96%), Postives = 193/207 (93.24%), Query Frame = 0


Query: 273 MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 332
           MA   DV ++      ++VKLFNRWT+DDV V DISLVDY+GV  AKHAT+VPHTAGRYS
Sbjct: 1   MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query: 333 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 392
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 393 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 452
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query: 453 INAAKGSSNSYAIKKKDEIERVAKANR 480
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_1G015150 vs. TAIR10
Match: AT3G51680.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 228.4 bits (581), Expect = 9.3e-60
Identity = 127/263 (48.29%), Postives = 172/263 (65.40%), Query Frame = 0


Query: 12  EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTS----FVHC 71
           EGK AIITGGA GIG++    F   GA VVIAD+ +  G+SL+  LSS  TS    F+ C
Sbjct: 33  EGKVAIITGGAHGIGKATVMLFARHGATVVIADVDNVAGSSLAKSLSSHKTSPMVAFISC 92

Query: 72  NVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALK--FNILENEYSDFQNVLNVNLVGA 131
           +V+ E DVEN+VN  V++YG+LDI+FNNAG+ G  K   +IL+ +  +F +V+ VN+ G 
Sbjct: 93  DVSVEADVENLVNVTVARYGRLDILFNNAGVLGDQKKHKSILDFDADEFDHVMRVNVRGV 152

Query: 132 FLGTKHAAKAMIPAG-QGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYG 191
            LG KH A+AMI  G +G I+ TASV   +GG+GP+AYT+SKH ++GL +NA  +LG+YG
Sbjct: 153 GLGMKHGARAMIKRGFKGCIISTASVAGVMGGMGPHAYTASKHAIVGLTKNAACELGKYG 212

Query: 192 IKVNCVSPHVVPTQMTREHFKLKDGDEFPD---------VYSHNFKCGDILRKEDVAEVG 251
           I+VNC+SP  V T M    ++   G +  D         V S     G+ LR  D+AE  
Sbjct: 213 IRVNCISPFGVATSMLVNAWRKTSGGDVEDDDVEEMEEFVRSLANLKGETLRANDIAEAA 272

Query: 252 LYLASDASRFVSGHNFVLDGGFT 259
           LYLASD S++V+GHN V+DGG T
Sbjct: 273 LYLASDESKYVNGHNLVVDGGVT 295

[Close]

BLAST of CsaV3_1G015150 vs. TAIR10
Match: AT1G52340.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-55
Identity = 118/259 (45.56%), Postives = 158/259 (61.00%), Query Frame = 0


Query: 13  GKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHL----SSSSTSFVHCN 72
           GK A+ITGGA GIGESI + F   GAKV I D+ DDLG  +   L    S  +  F+H +
Sbjct: 20  GKVALITGGATGIGESIVRLFHKHGAKVCIVDLQDDLGGEVCKSLLRGESKETAFFIHGD 79

Query: 73  VTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLG 132
           V  E D+ N V+ AV  +G LDI+ NNAG+ GA   +I     S+F+   +VN+ GAFL 
Sbjct: 80  VRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLS 139

Query: 133 TKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYGIKVN 192
            KHAA+ MIP  +GSIV   SV   +GG+GP++Y  SKH +LGL R+   +LG++GI+VN
Sbjct: 140 MKHAARVMIPEKKGSIVSLCSVGGVVGGVGPHSYVGSKHAVLGLTRSVAAELGQHGIRVN 199

Query: 193 CVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKC------GDILRKEDVAEVGLYLASDA 252
           CVSP+ V T++   H   ++  E   V   NF        G  L  +DVA   L+LASD 
Sbjct: 200 CVSPYAVATKLALAHLPEEERTEDAFVGFRNFAAANANLKGVELTVDDVANAVLFLASDD 259

Query: 253 SRFVSGHNFVLDGGFTAGN 262
           SR++SG N ++DGGFT  N
Sbjct: 260 SRYISGDNLMIDGGFTCTN 278

[Close]

BLAST of CsaV3_1G015150 vs. TAIR10
Match: AT3G29250.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-54
Identity = 117/250 (46.80%), Postives = 166/250 (66.40%), Query Frame = 0


Query: 12  EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNVTK 71
           +GK AIITGGA GIG    + F + GAKVVI DI ++LG +L+  +     SF  CNVT 
Sbjct: 45  DGKIAIITGGASGIGAEAVRLFTDHGAKVVIVDIQEELGQNLAVSIGLDKASFYRCNVTD 104

Query: 72  ETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKH 131
           ETDVEN V   V K+GKLD++F+NAG+  A   ++L+ +   F   + VN+ GA    KH
Sbjct: 105 ETDVENAVKFTVEKHGKLDVLFSNAGVLEAFG-SVLDLDLEAFDRTMAVNVRGAAAFIKH 164

Query: 132 AAKAMIPAG-QGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATIDLGRYGIKVNCV 191
           AA++M+ +G +GSIV T S+ + IGG GP++YT+SKH LLGL+R+A   LG+YGI+VN V
Sbjct: 165 AARSMVASGTRGSIVCTTSIAAEIGGPGPHSYTASKHALLGLIRSACAGLGQYGIRVNGV 224

Query: 192 SPHVVPTQMTREHFK--LKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASRFVSG 251
           +P+ V T MT  + +  +K  +E+ +    N K G +L+   +AE  L+LASD S ++SG
Sbjct: 225 APYGVATGMTSAYNEEAVKMLEEYGEALG-NLK-GVVLKARHIAEAALFLASDDSVYISG 284

Query: 252 HNFVLDGGFT 259
            N V+DGGF+
Sbjct: 285 QNLVVDGGFS 291

[Close]

BLAST of CsaV3_1G015150 vs. Swiss-Prot
Match: sp|Q9ZUT9|RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.1e-97
Identity = 180/207 (86.96%), Postives = 195/207 (94.20%), Query Frame = 0


Query: 273 MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 332
           MA   ++ ++   Q  ++VKLFNRW+FDDV V DISLVDY+GV P+KHAT+VPHTAGRYS
Sbjct: 1   MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 60

Query: 333 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 392
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 393 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 452
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 180

Query: 453 INAAKGSSNSYAIKKKDEIERVAKANR 480
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_1G015150 vs. Swiss-Prot
Match: sp|O65731|RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 4.1e-97
Identity = 179/190 (94.21%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 290 DVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 349
           +VKLFNRW+FDDVQ++D+SL+DY+GV P+KHATYVPHTAGRYSVKRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 350 SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 409
           SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 410 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 469
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 470 EIERVAKANR 480
           EIERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]

BLAST of CsaV3_1G015150 vs. Swiss-Prot
Match: sp|P51427|RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2)

HSP 1 Score: 355.1 bits (910), Expect = 1.2e-96
Identity = 180/207 (86.96%), Postives = 193/207 (93.24%), Query Frame = 0


Query: 273 MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 332
           MA   DV ++      ++VKLFNRWT+DDV V DISLVDY+GV  AKHAT+VPHTAGRYS
Sbjct: 1   MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query: 333 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 392
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 393 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 452
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query: 453 INAAKGSSNSYAIKKKDEIERVAKANR 480
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_1G015150 vs. Swiss-Prot
Match: sp|Q5E988|RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3)

HSP 1 Score: 310.1 bits (793), Expect = 4.4e-83
Identity = 153/190 (80.53%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 290 DVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 349
           D+KLF +W+ DDVQ+NDISL DY+ V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 350 SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 409
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 410 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 469
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 470 EIERVAKANR 480
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of CsaV3_1G015150 vs. Swiss-Prot
Match: sp|P46782|RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4)

HSP 1 Score: 310.1 bits (793), Expect = 4.4e-83
Identity = 153/190 (80.53%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 290 DVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 349
           D+KLF +W+ DDVQ+NDISL DY+ V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 350 SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 409
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 410 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 469
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 470 EIERVAKANR 480
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of CsaV3_1G015150 vs. TrEMBL
Match: tr|A0A0A0LT69|A0A0A0LT69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168890 PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 2.7e-146
Identity = 264/273 (96.70%), Postives = 264/273 (96.70%), Query Frame = 0


Query: 1   MGVPCFQLLQE--EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLS 60
           MGVP         EGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLS
Sbjct: 1   MGVPLLPAAARRLEGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLS 60

Query: 61  SSSTSFVHCNVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVL 120
           SSSTSFVHCNVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVL
Sbjct: 61  SSSTSFVHCNVTKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVL 120

Query: 121 NVNLVGAFLGTKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATI 180
           NVNLVGAFLGTKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATI
Sbjct: 121 NVNLVGAFLGTKHAAKAMIPAGQGSIVITASVCSSIGGIGPYAYTSSKHGLLGLMRNATI 180

Query: 181 DLGRYGIKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYL 240
           DLGRYGIKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYL
Sbjct: 181 DLGRYGIKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYL 240

Query: 241 ASDASRFVSGHNFVLDGGFTAGNQGLCSYQQFG 272
           ASDASRFVSGHNFVLDGGFTAGNQGLCSYQQFG
Sbjct: 241 ASDASRFVSGHNFVLDGGFTAGNQGLCSYQQFG 273

[Close]

BLAST of CsaV3_1G015150 vs. TrEMBL
Match: tr|A0A1S3BGS9|A0A1S3BGS9_CUCME (40S ribosomal protein S5-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489682 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.0e-108
Identity = 205/214 (95.79%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 266 SYQQFGIMAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVP 325
           S    GIMAVE+DV +QELTQ HHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVP
Sbjct: 7   SLSHLGIMAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVP 66

Query: 326 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQ 385
           HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQ
Sbjct: 67  HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQ 126

Query: 386 VIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIA 445
           VIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIA
Sbjct: 127 VIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIA 186

Query: 446 ECLADELINAAKGSSNSYAIKKKDEIERVAKANR 480
           ECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 187 ECLADELINAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]

BLAST of CsaV3_1G015150 vs. TrEMBL
Match: tr|A0A1S3CLA9|A0A1S3CLA9_CUCME (40S ribosomal protein S5 OS=Cucumis melo OX=3656 GN=LOC103501740 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.0e-108
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 273 MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 332
           MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 333 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 392
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 393 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 452
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 453 INAAKGSSNSYAIKKKDEIERVAKANR 480
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_1G015150 vs. TrEMBL
Match: tr|A0A0A0LVI4|A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus OX=3659 GN=Csa_1G168900 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.8e-108
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 273 MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 332
           MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 333 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 392
           VKRFRKAQCPIVER TNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERRTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 393 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 452
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 453 INAAKGSSNSYAIKKKDEIERVAKANR 480
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of CsaV3_1G015150 vs. TrEMBL
Match: tr|A0A1S3C3S7|A0A1S3C3S7_CUCME (40S ribosomal protein S5-like OS=Cucumis melo OX=3656 GN=LOC103496679 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 6.5e-108
Identity = 204/209 (97.61%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 271 GIMAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGR 330
           G MAVEVDV +QELTQ HHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGR
Sbjct: 45  GTMAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGR 104

Query: 331 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA 390
           YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA
Sbjct: 105 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA 164

Query: 391 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 450
           VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD
Sbjct: 165 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 224

Query: 451 ELINAAKGSSNSYAIKKKDEIERVAKANR 480
           ELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 225 ELINAAKGSSNSYAIKKKDEIERVAKANR 253

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139590.1	4.1e-146	96.70	PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus] >KGN64963.1 hypo...	[more]
XP_022927564.1	9.8e-116	81.32	secoisolariciresinol dehydrogenase-like isoform X1 [Cucurbita moschata]	[more]
XP_022927566.1	9.8e-116	81.32	secoisolariciresinol dehydrogenase-like isoform X3 [Cucurbita moschata]	[more]
XP_022927565.1	9.8e-116	81.32	secoisolariciresinol dehydrogenase-like isoform X2 [Cucurbita moschata]	[more]
XP_022973162.1	2.2e-115	80.16	secoisolariciresinol dehydrogenase-like [Cucurbita maxima]	[more]

BLAST of CsaV3_1G015150 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37270.1	6.0e-99	86.96	ribosomal protein 5B	[more]
AT3G11940.1	6.6e-98	86.96	ribosomal protein 5A	[more]
AT3G51680.1	9.3e-60	48.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G52340.1	1.1e-55	45.56	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT3G29250.1	4.5e-54	46.80	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of CsaV3_1G015150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUT9\|RS51_ARATH	1.1e-97	86.96	40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1	[more]
sp\|O65731\|RS5_CICAR	4.1e-97	94.21	40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1	[more]
sp\|P51427\|RS52_ARATH	1.2e-96	86.96	40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2	[more]
sp\|Q5E988\|RS5_BOVIN	4.4e-83	80.53	40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3	[more]
sp\|P46782\|RS5_HUMAN	4.4e-83	80.53	40S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4	[more]

BLAST of CsaV3_1G015150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT69\|A0A0A0LT69_CUCSA	2.7e-146	96.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168890 PE=4 SV=1	[more]
tr\|A0A1S3BGS9\|A0A1S3BGS9_CUCME	1.0e-108	95.79	40S ribosomal protein S5-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489682...	[more]
tr\|A0A1S3CLA9\|A0A1S3CLA9_CUCME	1.0e-108	99.52	40S ribosomal protein S5 OS=Cucumis melo OX=3656 GN=LOC103501740 PE=3 SV=1	[more]
tr\|A0A0A0LVI4\|A0A0A0LVI4_CUCSA	3.8e-108	99.52	40S ribosomal protein S5 OS=Cucumis sativus OX=3659 GN=Csa_1G168900 PE=4 SV=1	[more]
tr\|A0A1S3C3S7\|A0A1S3C3S7_CUCME	6.5e-108	97.61	40S ribosomal protein S5-like OS=Cucumis melo OX=3656 GN=LOC103496679 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR020606	Ribosomal_S7_CS
IPR000235	Ribosomal_S5/S7
IPR036823	Ribosomal_S7_dom_sf
IPR005716	Ribosomal_S5/S7_euk/arc
IPR023798	Ribosomal_S7_dom
IPR002347	SDR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015150.1	CsaV3_1G015150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 162..181 score: 31.52 coord: 221..241 score: 29.61 coord: 15..32 score: 45.57 coord: 136..152 score: 31.35 coord: 87..98 score: 58.12 coord: 183..200 score: 38.72
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 142..150 score: 46.04 coord: 87..98 score: 51.1 coord: 162..181 score: 26.8
None	No IPR available	PFAM	PF13561	adh_short_C2	coord: 20..258 e-value: 5.2E-60 score: 202.8
None	No IPR available	GENE3D	G3DSA:3.40.50.720		coord: 9..263 e-value: 3.2E-68 score: 232.1
None	No IPR available	PANTHER	PTHR11205:SF31	40S RIBOSOMAL PROTEIN S5-1-RELATED	coord: 275..479
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 334..479 e-value: 1.1E-35 score: 122.3
IPR005716	Ribosomal protein S5/S7, eukaryotic/archaeal	TIGRFAM	TIGR01028	TIGR01028	coord: 291..479 e-value: 8.3E-89 score: 294.1
IPR005716	Ribosomal protein S5/S7, eukaryotic/archaeal	CDD	cd14867	uS7_Eukaryote	coord: 292..479 e-value: 7.16823E-137 score: 394.228
IPR036823	Ribosomal protein S7 domain superfamily	GENE3D	G3DSA:1.10.455.10		coord: 275..479 e-value: 1.8E-100 score: 336.4
IPR036823	Ribosomal protein S7 domain superfamily	SUPERFAMILY	SSF47973	Ribosomal protein S7	coord: 292..479
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 275..479
IPR020606	Ribosomal protein S7, conserved site	PROSITE	PS00052	RIBOSOMAL_S7	coord: 345..371
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 12..259

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015150	CSPI01G15050	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015150	Cucsa.319650	Cucumber (Gy14) v1	cgycucB496
CsaV3_1G015150	CsGy1G014830	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015150	MELO3C025582	Melon (DHL92) v3.5.1	cucmeB030

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015150	Cucumber (Chinese Long) v3	cuccucB005
CsaV3_1G015150	Cucumber (Chinese Long) v3	cuccucB023
CsaV3_1G015150	Cucumber (Chinese Long) v3	cuccucB046
CsaV3_1G015150	Silver-seed gourd	carcucB0000
CsaV3_1G015150	Cucurbita maxima (Rimu)	cmacucB0253
CsaV3_1G015150	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015150	Cucurbita maxima (Rimu)	cmacucB0694
CsaV3_1G015150	Cucurbita maxima (Rimu)	cmacucB0962
CsaV3_1G015150	Cucurbita moschata (Rifu)	cmocucB0239
CsaV3_1G015150	Cucurbita moschata (Rifu)	cmocucB0460
CsaV3_1G015150	Cucurbita moschata (Rifu)	cmocucB0951
CsaV3_1G015150	Cucurbita pepo (Zucchini)	cpecucB0003
CsaV3_1G015150	Cucurbita pepo (Zucchini)	cpecucB0024
CsaV3_1G015150	Cucurbita pepo (Zucchini)	cpecucB1044
CsaV3_1G015150	Bottle gourd (USVL1VR-Ls)	cuclsiB005
CsaV3_1G015150	Bottle gourd (USVL1VR-Ls)	cuclsiB021
CsaV3_1G015150	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015150	Melon (DHL92) v3.5.1	cucmeB016
CsaV3_1G015150	Melon (DHL92) v3.5.1	cucmeB072
CsaV3_1G015150	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G015150	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015150	Watermelon (Charleston Gray)	cucwcgB030
CsaV3_1G015150	Watermelon (97103) v1	cucwmB009
CsaV3_1G015150	Watermelon (97103) v1	cucwmB049
CsaV3_1G015150	Watermelon (97103) v1	cucwmB074
CsaV3_1G015150	Watermelon (97103) v2	cucwmbB008
CsaV3_1G015150	Watermelon (97103) v2	cucwmbB017
CsaV3_1G015150	Watermelon (97103) v2	cucwmbB025