CsaV3_1G015070 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015070
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 10695208 .. 10695393 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

mRNA sequence

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Coding sequence (CDS)

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Protein sequence

MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTWR

Homology

[Close]

BLAST of CsaV3_1G015070 vs. NCBI nr
Match: KGN64955.1 (hypothetical protein Csa_1G166840 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of CsaV3_1G015070 vs. TrEMBL
Match: tr|A0A0A0LSR6|A0A0A0LSR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166840 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64955.1	2.1e-26	100.00	hypothetical protein Csa_1G166840 [Cucumis sativus]	[more]

BLAST of CsaV3_1G015070 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSR6\|A0A0A0LSR6_CUCSA	1.4e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166840 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015070.1	CsaV3_1G015070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015070	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015070	Cucumber (Gy14) v1	cgycucB496
CsaV3_1G015070	Cucurbita maxima (Rimu)	cmacucB0253
CsaV3_1G015070	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015070	Cucurbita maxima (Rimu)	cmacucB0694
CsaV3_1G015070	Cucurbita maxima (Rimu)	cmacucB0962
CsaV3_1G015070	Cucurbita moschata (Rifu)	cmocucB0239
CsaV3_1G015070	Cucurbita moschata (Rifu)	cmocucB0460
CsaV3_1G015070	Cucurbita moschata (Rifu)	cmocucB0951
CsaV3_1G015070	Cucurbita pepo (Zucchini)	cpecucB0003
CsaV3_1G015070	Cucurbita pepo (Zucchini)	cpecucB0024
CsaV3_1G015070	Cucurbita pepo (Zucchini)	cpecucB1044
CsaV3_1G015070	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015070	Bottle gourd (USVL1VR-Ls)	cuclsiB005
CsaV3_1G015070	Bottle gourd (USVL1VR-Ls)	cuclsiB021
CsaV3_1G015070	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015070	Melon (DHL92) v3.5.1	cucmeB030
CsaV3_1G015070	Melon (DHL92) v3.5.1	cucmeB072
CsaV3_1G015070	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G015070	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015070	Watermelon (Charleston Gray)	cucwcgB030
CsaV3_1G015070	Watermelon (97103) v1	cucwmB009
CsaV3_1G015070	Watermelon (97103) v1	cucwmB049
CsaV3_1G015070	Watermelon (97103) v1	cucwmB063
CsaV3_1G015070	Watermelon (97103) v1	cucwmB074
CsaV3_1G015070	Watermelon (97103) v2	cucwmbB008
CsaV3_1G015070	Watermelon (97103) v2	cucwmbB017
CsaV3_1G015070	Watermelon (97103) v2	cucwmbB025
CsaV3_1G015070	Wax gourd	cucwgoB051
CsaV3_1G015070	Cucumber (Chinese Long) v3	cuccucB023
CsaV3_1G015070	Cucumber (Chinese Long) v3	cuccucB046
CsaV3_1G015070	Silver-seed gourd	carcucB0000
CsaV3_1G015070	Silver-seed gourd	carcucB1027