CsaV3_1G014880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10533885 .. 10534097 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGACTTCCACGACGGCGTCGTGCAGTCGCCGCCAGCGTTTATCTTCTTTGTCTTGTTCTCGCAACGTTTCTATCCTTTTCGACGAGTTTCAGCGGTAGTCCACTCTCGGATTGGTCTCAATTCACTTTACCCCCTATCATAGCATGCGTTTCTGCAAGTTTGAACACTTTCGAACACCAACCATCTTATCAGAGTCCATTTGGGTAA

mRNA sequence

ATGGCGAGACTTCCACGACGGCGTCGTGCAGTCGCCGCCAGCGTTTATCTTCTTTGTCTTGTTCTCGCAACGTTTCTATCCTTTTCGACGAGTTTCAGCGGTAGTCCACTCTCGGATTGGTCTCAATTCACTTTACCCCCTATCATAGCATGCGTTTCTGCAAGTTTGAACACTTTCGAACACCAACCATCTTATCAGAGTCCATTTGGGTAA

Coding sequence (CDS)

ATGGCGAGACTTCCACGACGGCGTCGTGCAGTCGCCGCCAGCGTTTATCTTCTTTGTCTTGTTCTCGCAACGTTTCTATCCTTTTCGACGAGTTTCAGCGGTAGTCCACTCTCGGATTGGTCTCAATTCACTTTACCCCCTATCATAGCATGCGTTTCTGCAAGTTTGAACACTTTCGAACACCAACCATCTTATCAGAGTCCATTTGGGTAA

Protein sequence

MARLPRRRRAVAASVYLLCLVLATFLSFSTSFSGSPLSDWSQFTLPPIIACVSASLNTFEHQPSYQSPFG
Homology
[Close]
BLAST of CsaV3_1G014880 vs. NCBI nr
Match: KGN64936.1 (hypothetical protein Csa_1G164700 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MARLPRRRRAVAASVYLLCLVLATFLSFSTSFSGSPLSDWSQFTLPPIIACVSASLNTFE 60
          MARLPRRRRAVAASVYLLCLVLATFLSFSTSFSGSPLSDWSQFTLPPIIACVSASLNTFE
Sbjct: 1  MARLPRRRRAVAASVYLLCLVLATFLSFSTSFSGSPLSDWSQFTLPPIIACVSASLNTFE 60

Query: 61 HQPSYQSPFG 71
          HQPSYQSPFG
Sbjct: 61 HQPSYQSPFG 70

[Close]
BLAST of CsaV3_1G014880 vs. TrEMBL
Match: tr|A0A0A0LY95|A0A0A0LY95_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G164700 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MARLPRRRRAVAASVYLLCLVLATFLSFSTSFSGSPLSDWSQFTLPPIIACVSASLNTFE 60
          MARLPRRRRAVAASVYLLCLVLATFLSFSTSFSGSPLSDWSQFTLPPIIACVSASLNTFE
Sbjct: 1  MARLPRRRRAVAASVYLLCLVLATFLSFSTSFSGSPLSDWSQFTLPPIIACVSASLNTFE 60

Query: 61 HQPSYQSPFG 71
          HQPSYQSPFG
Sbjct: 61 HQPSYQSPFG 70

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64936.12.1e-30100.00hypothetical protein Csa_1G164700 [Cucumis sativus][more]
BLAST of CsaV3_1G014880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LY95|A0A0A0LY95_CUCSA1.4e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G164700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014880.1CsaV3_1G014880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G014880CSPI01G14770Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014880Watermelon (97103) v2cucwmbB006
CsaV3_1G014880Watermelon (97103) v2cucwmbB008
CsaV3_1G014880Watermelon (97103) v2cucwmbB025
CsaV3_1G014880Wax gourdcucwgoB051
CsaV3_1G014880Cucumber (Chinese Long) v3cuccucB046
CsaV3_1G014880Silver-seed gourdcarcucB0000
CsaV3_1G014880Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014880Cucumber (Gy14) v1cgycucB496
CsaV3_1G014880Cucurbita maxima (Rimu)cmacucB0473
CsaV3_1G014880Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G014880Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G014880Cucurbita maxima (Rimu)cmacucB0962
CsaV3_1G014880Cucurbita moschata (Rifu)cmocucB0460
CsaV3_1G014880Cucurbita moschata (Rifu)cmocucB0951
CsaV3_1G014880Cucurbita pepo (Zucchini)cpecucB0024
CsaV3_1G014880Cucurbita pepo (Zucchini)cpecucB1044
CsaV3_1G014880Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G014880Bottle gourd (USVL1VR-Ls)cuclsiB021
CsaV3_1G014880Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G014880Bottle gourd (USVL1VR-Ls)cuclsiB050
CsaV3_1G014880Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014880Melon (DHL92) v3.5.1cucmeB072
CsaV3_1G014880Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014880Watermelon (Charleston Gray)cucwcgB019
CsaV3_1G014880Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G014880Watermelon (97103) v1cucwmB009
CsaV3_1G014880Watermelon (97103) v1cucwmB049
CsaV3_1G014880Watermelon (97103) v1cucwmB063
CsaV3_1G014880Watermelon (97103) v1cucwmB074