CsaV3_1G014840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10470909 .. 10471163 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAAGAGAAGCTTACAGAAAGAGAGAGGCAGCGGAGAAAGCAAGGACAGGAAATCAAAAGGGAGACGTAAGTGGTTGAAGGATGCGAATATTAGGGCAATATATATATATATATATAGAATATATATAAAGAAAGAGGAAGAAAAATGGCTTTTGGAGAATGGTGAAGGCCCAGAGGAGGAAGAGGGAAGAGGGGGGATGAATGGAGAATTTGCCATTTGCGAGGTTCGAAGAGGCGGAGAGTGAAGTAG

mRNA sequence

ATGGGGGAAGAGAAGCTTACAGAAAGAGAGAGGCAGCGGAGAAAGCAAGGACAGGAAATCAAAAGGGAGACGCCCAGAGGAGGAAGAGGGAAGAGGGGGGATGAATGGAGAATTTGCCATTTGCGAGGTTCGAAGAGGCGGAGAGTGAAGTAG

Coding sequence (CDS)

ATGGGGGAAGAGAAGCTTACAGAAAGAGAGAGGCAGCGGAGAAAGCAAGGACAGGAAATCAAAAGGGAGACGCCCAGAGGAGGAAGAGGGAAGAGGGGGGATGAATGGAGAATTTGCCATTTGCGAGGTTCGAAGAGGCGGAGAGTGAAGTAG

Protein sequence

MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK
Homology
[Close]
BLAST of CsaV3_1G014840 vs. NCBI nr
Match: KGN64930.1 (hypothetical protein Csa_1G163150 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 51
          MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK
Sbjct: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 50

[Close]
BLAST of CsaV3_1G014840 vs. TrEMBL
Match: tr|A0A0A0LSN7|A0A0A0LSN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G163150 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 51
          MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK
Sbjct: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 50

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64930.11.9e-17100.00hypothetical protein Csa_1G163150 [Cucumis sativus][more]
BLAST of CsaV3_1G014840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSN7|A0A0A0LSN7_CUCSA1.3e-17100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G163150 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014840.1CsaV3_1G014840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014840Cucumber (Chinese Long) v3cuccucB046
CsaV3_1G014840Silver-seed gourdcarcucB0000
CsaV3_1G014840Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014840Cucumber (Gy14) v1cgycucB322
CsaV3_1G014840Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G014840Cucurbita maxima (Rimu)cmacucB0473
CsaV3_1G014840Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G014840Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G014840Cucurbita maxima (Rimu)cmacucB0962
CsaV3_1G014840Cucurbita moschata (Rifu)cmocucB0460
CsaV3_1G014840Cucurbita moschata (Rifu)cmocucB0951
CsaV3_1G014840Cucurbita pepo (Zucchini)cpecucB0024
CsaV3_1G014840Cucurbita pepo (Zucchini)cpecucB1044
CsaV3_1G014840Wild cucumber (PI 183967)cpicucB001
CsaV3_1G014840Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G014840Bottle gourd (USVL1VR-Ls)cuclsiB021
CsaV3_1G014840Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G014840Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014840Melon (DHL92) v3.5.1cucmeB072
CsaV3_1G014840Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014840Watermelon (Charleston Gray)cucwcgB026
CsaV3_1G014840Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G014840Watermelon (97103) v1cucwmB009
CsaV3_1G014840Watermelon (97103) v1cucwmB049
CsaV3_1G014840Watermelon (97103) v1cucwmB063
CsaV3_1G014840Watermelon (97103) v1cucwmB074
CsaV3_1G014840Watermelon (97103) v2cucwmbB008
CsaV3_1G014840Watermelon (97103) v2cucwmbB025
CsaV3_1G014840Wax gourdcucwgoB051