CsaV3_1G014700 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014700
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	THO complex subunit 2
Location	chr1 : 10258275 .. 10258698 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTGATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTGTGTGCGTTTTCTCATAATTGAATTACGTACTTTTGATATTTGTCTATTCTTTATTTATAAGATTTAAACTCTCAATATATTATGCATTAAAGTTCTTTTGTAGGCAATAGTTCTGATCTGGAATGACTCGTTTTTGTAGGTTTCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

mRNA sequence

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTGATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTTTCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

Coding sequence (CDS)

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTGATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTTTCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

Protein sequence

MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL

Homology

[Close]

BLAST of CsaV3_1G014700 vs. NCBI nr
Match: KGN64916.1 (hypothetical protein Csa_1G159090 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 2.5e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60
          MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR
Sbjct: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60

Query: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 94
          LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL
Sbjct: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93

[Close]

BLAST of CsaV3_1G014700 vs. NCBI nr
Match: XP_008467094.1 (PREDICTED: THO complex subunit 2 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-19
Identity = 58/105 (55.24%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL+TAV                 HLY LD E           
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIPSLNELAHLYHLDPE----------- 857

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
                V+F+IYRP+MRLFKCQGGS+IFWPL+GNDAN VGN  DL+
Sbjct: 858 -----VAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVVGNSSDLE 886

[Close]

BLAST of CsaV3_1G014700 vs. NCBI nr
Match: XP_022994003.1 (THO complex subunit 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-19
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHV-----SLSYDFCFLGIVSFIIY 60
           MVS+QFDR HGTLLQYVEFLS+AV          YAH+      L++ +     V+F++Y
Sbjct: 669 MVSEQFDRCHGTLLQYVEFLSSAVT-----PASAYAHLIPSLNELAHRYHLDPEVAFLMY 728

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
           RP+MRLFKCQGGS+IFWPL+GNDAN  GN  D++
Sbjct: 729 RPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDME 757

[Close]

BLAST of CsaV3_1G014700 vs. NCBI nr
Match: XP_022994002.1 (THO complex subunit 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-19
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHV-----SLSYDFCFLGIVSFIIY 60
           MVS+QFDR HGTLLQYVEFLS+AV          YAH+      L++ +     V+F++Y
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLSSAVT-----PASAYAHLIPSLNELAHRYHLDPEVAFLMY 857

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
           RP+MRLFKCQGGS+IFWPL+GNDAN  GN  D++
Sbjct: 858 RPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDME 886

[Close]

BLAST of CsaV3_1G014700 vs. NCBI nr
Match: XP_004142861.1 (PREDICTED: THO complex subunit 2 [Cucumis sativus] >KGN51455.1 hypothetical protein Csa_5G550190 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-19
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL+TAV                 HLY LD E           
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIPSLNELAHLYHLDPE----------- 857

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
                V+F+IYRP+MRL+KCQGGS+IFWPL+GNDAN +GN  DL+
Sbjct: 858 -----VAFLIYRPIMRLYKCQGGSDIFWPLDGNDANVIGNSSDLE 886

[Close]

BLAST of CsaV3_1G014700 vs. TAIR10
Match: AT1G24706.2 (THO2)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-11
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----VHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYR 60
           MV++QFDR HG LLQYV+FLS+AV     +  L+   D     L + +     V+F+++R
Sbjct: 790 MVTEQFDRCHGILLQYVDFLSSAVSPTTAYARLVPSLD----ELVHTYHLEAEVAFLVFR 849

Query: 61  PMMRLFKCQGGSNIFWPLNGNDA 80
           P+MRLFKC+   ++ WPL+  ++
Sbjct: 850 PVMRLFKCRRNGDVSWPLDSGES 868

[Close]

BLAST of CsaV3_1G014700 vs. Swiss-Prot
Match: sp|F4IAT2|THOC2_ARATH (THO complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=THO2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-10
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----VHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYR 60
           MV++QFDR HG LLQYV+FLS+AV     +  L+   D     L + +     V+F+++R
Sbjct: 790 MVTEQFDRCHGILLQYVDFLSSAVSPTTAYARLVPSLD----ELVHTYHLEAEVAFLVFR 849

Query: 61  PMMRLFKCQGGSNIFWPLNGNDA 80
           P+MRLFKC+   ++ WPL+  ++
Sbjct: 850 PVMRLFKCRRNGDVSWPLDSGES 868

[Close]

BLAST of CsaV3_1G014700 vs. TrEMBL
Match: tr|A0A0A0LY71|A0A0A0LY71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G159090 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60
          MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR
Sbjct: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60

Query: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 94
          LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL
Sbjct: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93

[Close]

BLAST of CsaV3_1G014700 vs. TrEMBL
Match: tr|A0A1S3CSX0|A0A1S3CSX0_CUCME (THO complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504529 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19
Identity = 58/105 (55.24%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL+TAV                 HLY LD E           
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIPSLNELAHLYHLDPE----------- 857

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
                V+F+IYRP+MRLFKCQGGS+IFWPL+GNDAN VGN  DL+
Sbjct: 858 -----VAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVVGNSSDLE 886

[Close]

BLAST of CsaV3_1G014700 vs. TrEMBL
Match: tr|A0A0A0KPA6|A0A0A0KPA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550190 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-19
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL+TAV                 HLY LD E           
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIPSLNELAHLYHLDPE----------- 857

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
                V+F+IYRP+MRL+KCQGGS+IFWPL+GNDAN +GN  DL+
Sbjct: 858 -----VAFLIYRPIMRLYKCQGGSDIFWPLDGNDANVIGNSSDLE 886

[Close]

BLAST of CsaV3_1G014700 vs. TrEMBL
Match: tr|A0A2N9ED70|A0A2N9ED70_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS456 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-15
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL +AV                VHLY LD E           
Sbjct: 110 MVSEQFDRCHGTLLQYVEFLCSAVTPGSAYAQLIPSLHDLVHLYHLDPE----------- 169

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGN 85
                V+F+IYRP+MRLFKCQG S++FWPL+ NDA  + N
Sbjct: 170 -----VAFLIYRPVMRLFKCQGSSDVFWPLDDNDATNISN 193

[Close]

BLAST of CsaV3_1G014700 vs. TrEMBL
Match: tr|A0A2N9HAW9|A0A2N9HAW9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39399 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-15
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL +AV                VHLY LD E           
Sbjct: 65  MVSEQFDRCHGTLLQYVEFLCSAVTPGSAYAQLIPSLHDLVHLYHLDPE----------- 124

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGN 85
                V+F+IYRP+MRLFKCQG S++FWPL+ NDA  + N
Sbjct: 125 -----VAFLIYRPVMRLFKCQGSSDVFWPLDDNDATNISN 148

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64916.1	2.5e-47	100.00	hypothetical protein Csa_1G159090 [Cucumis sativus]	[more]
XP_008467094.1	2.9e-19	55.24	PREDICTED: THO complex subunit 2 [Cucumis melo]	[more]
XP_022994003.1	6.4e-19	56.38	THO complex subunit 2-like isoform X2 [Cucurbita maxima]	[more]
XP_022994002.1	6.4e-19	56.38	THO complex subunit 2-like isoform X1 [Cucurbita maxima]	[more]
XP_004142861.1	8.3e-19	53.33	PREDICTED: THO complex subunit 2 [Cucumis sativus] >KGN51455.1 hypothetical prot...	[more]

BLAST of CsaV3_1G014700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24706.2	3.5e-11	40.96	THO2	[more]

BLAST of CsaV3_1G014700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4IAT2\|THOC2_ARATH	6.3e-10	40.96	THO complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=THO2 PE=1 SV=1	[more]

BLAST of CsaV3_1G014700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY71\|A0A0A0LY71_CUCSA	1.6e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G159090 PE=4 SV=1	[more]
tr\|A0A1S3CSX0\|A0A1S3CSX0_CUCME	1.9e-19	55.24	THO complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504529 PE=4 SV=1	[more]
tr\|A0A0A0KPA6\|A0A0A0KPA6_CUCSA	5.5e-19	53.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550190 PE=4 SV=1	[more]
tr\|A0A2N9ED70\|A0A2N9ED70_FAGSY	8.2e-15	50.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS456 PE=4 SV=1	[more]
tr\|A0A2N9HAW9\|A0A2N9HAW9_FAGSY	8.2e-15	50.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39399 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014700.1	CsaV3_1G014700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21597	THO2 PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR21597:SF6	SUBFAMILY NOT NAMED	coord: 1..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G014700	CsGy1G014470	Cucumber (Gy14) v2	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G014700	Cucumber (Chinese Long) v3	cuccucB046
CsaV3_1G014700	Cucumber (Gy14) v1	cgycucB322
CsaV3_1G014700	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G014700	Cucurbita maxima (Rimu)	cmacucB0473
CsaV3_1G014700	Cucurbita maxima (Rimu)	cmacucB0694
CsaV3_1G014700	Cucurbita maxima (Rimu)	cmacucB0962
CsaV3_1G014700	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G014700	Cucurbita moschata (Rifu)	cmocucB0951
CsaV3_1G014700	Cucurbita pepo (Zucchini)	cpecucB0631
CsaV3_1G014700	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G014700	Cucurbita pepo (Zucchini)	cpecucB1044
CsaV3_1G014700	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G014700	Bottle gourd (USVL1VR-Ls)	cuclsiB005
CsaV3_1G014700	Bottle gourd (USVL1VR-Ls)	cuclsiB021
CsaV3_1G014700	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G014700	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G014700	Melon (DHL92) v3.5.1	cucmeB072
CsaV3_1G014700	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G014700	Watermelon (Charleston Gray)	cucwcgB026
CsaV3_1G014700	Watermelon (Charleston Gray)	cucwcgB030
CsaV3_1G014700	Watermelon (97103) v1	cucwmB009
CsaV3_1G014700	Watermelon (97103) v1	cucwmB049
CsaV3_1G014700	Watermelon (97103) v1	cucwmB074
CsaV3_1G014700	Watermelon (97103) v2	cucwmbB008
CsaV3_1G014700	Watermelon (97103) v2	cucwmbB025
CsaV3_1G014700	Wax gourd	cucwgoB051