CsaV3_1G014390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 9846350 .. 9846652 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

mRNA sequence

ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

Coding sequence (CDS)

ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

Protein sequence

MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRNERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY
Homology
[Close]
BLAST of CsaV3_1G014390 vs. NCBI nr
Match: KGN64878.1 (hypothetical protein Csa_1G144310 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MNLEIDEEERVAVRLMKRKLEKTIAITLEERQ 33
          MNLEIDEEERVAVRLMKRKLEKTIAITLEERQ
Sbjct: 1  MNLEIDEEERVAVRLMKRKLEKTIAITLEERQ 32

[Close]
BLAST of CsaV3_1G014390 vs. TrEMBL
Match: tr|A0A0A0LSW1|A0A0A0LSW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144310 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MNLEIDEEERVAVRLMKRKLEKTIAITLEERQ 33
          MNLEIDEEERVAVRLMKRKLEKTIAITLEERQ
Sbjct: 1  MNLEIDEEERVAVRLMKRKLEKTIAITLEERQ 32

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64878.13.9e-06100.00hypothetical protein Csa_1G144310 [Cucumis sativus][more]
BLAST of CsaV3_1G014390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSW1|A0A0A0LSW1_CUCSA2.6e-06100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144310 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014390.1CsaV3_1G014390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..87

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014390Silver-seed gourdcarcucB0192
CsaV3_1G014390Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014390Cucumber (Gy14) v1cgycucB322
CsaV3_1G014390Cucurbita maxima (Rimu)cmacucB0188
CsaV3_1G014390Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G014390Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G014390Cucurbita moschata (Rifu)cmocucB0172
CsaV3_1G014390Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G014390Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G014390Wild cucumber (PI 183967)cpicucB001
CsaV3_1G014390Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G014390Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G014390Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014390Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014390Watermelon (Charleston Gray)cucwcgB016
CsaV3_1G014390Watermelon (Charleston Gray)cucwcgB026
CsaV3_1G014390Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G014390Watermelon (97103) v1cucwmB052
CsaV3_1G014390Watermelon (97103) v1cucwmB060
CsaV3_1G014390Watermelon (97103) v1cucwmB074
CsaV3_1G014390Watermelon (97103) v2cucwmbB002
CsaV3_1G014390Watermelon (97103) v2cucwmbB008
CsaV3_1G014390Watermelon (97103) v2cucwmbB025
CsaV3_1G014390Wax gourdcucwgoB051