CsaV3_1G014210 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014210
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Late embryogenesis abundant protein
Location	chr1 : 9648652 .. 9653991 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGTACTACTACTACTACTACACATGGGATAACAAAACGGACAAGGCTCATTAGAGTTCTAGGAAGAAGCTTGTTGGGAGTTATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAATCCCCACGTCTCATTGTGGAAACTGGCAAAGTCATAGCCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCTTTCACTGTCAAAAGCTACAACCCTAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACCCTCACGCCCAGAAACCAAACCGTCTTGTCGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAACCCAGAACTTCAATTCTCAGCTGAAGTCAGGTACAATCATTTAGAGATAACTTTAAAGTCAGACCCAAATTTTTGGATCAAAATGGAATATGCTCAACTTTTAAAAATATAAGTTTTCTTTTTACTATTTATTTTTACTATTTGCTTGTGTCATATTCTGCGAAAATTGGCAAAACTTTTTTGTGTGAGAATGGGAGAGAAAAATCAAACTTAGCGGAATGAGAGGAGCAAGAGAAAATAGCCGTATCAGAAAAGGCGAGGGAAGCGAGAGAAAATAGATGTGAGGAGAAAAATTTCTAAATCCAAAAGAATGAGAGAGAAACCAGAGGAAATAGGAGAGAGCAATGACCTGAAAGGTGTAACTCAAAGAAATGAAAAAACAAGATCATAATCTGCGTGGAAAATCGTCAAATTTGATAATTTTTACAAAATATGATCTAACAAGATCATAAGAAAACCCTTTTATTTTTTGTTTCAGATTTTAAAAACTAATTAATTTTATGGATTGTACTTTTCACAAGTAAATTTCTAGTTTCATAATCTAAATCTATTTTTTTGTAAGGGTAACTCCATGCGACCATGCAGGGGTACGCAACGCTACCCCTTTCAAACAATAATAATTATAAATGCTTTGCAAAATTTTTAAAGATTTGTATGCATAACAATAAAATTCATCTATCATTATCACTACACTAGTAGAACTCCTTGACTTCTAATGATATGATCTTTTCCGATTCATAAATATACTTCTAGAACTTAATTTTAATTTTTTCATATTTTCATACTACAAGTTCTTTTGCATTATTTTATATCTGGTTGTTATATTTGAAACCGTCTCGTTCTTTTATTATACTAAATAGAATATTAAATTTTGTCTCTCTCTATTTTTTTTGTTGGGCTTTGTCCTTATCAGTTACAGTATCAAGAAATGGATGTCAAAACCTCGATTGCTTGAGATATATTGTAATCATATCTTGCTTAAAATCAATGATTCAACCGCGTTTGATAATACCAAATGCAAAGTGGATTTTTGAGATTTGACGATCTTGAGGATACAGTTCTTGCTGAATAATCCCAAAGAACACATTTGTTACCCAAAGTTACATTTTTTTTTTTGTTTTAATTAATTGTTTCTTTACAAATTGAGAGTTCTTTTTTTTTTTTTCGGATAATGAAGAAAAATGGTTATGAAAGATTTGAGATTGAGAAAAGTGAGGTGAAAATATAGATTATAATTTGTTGTAGTGTACGAAGAAAAATAATATGTGTGTGTATAATTTACTTTGGAGAAAGGGAAAGAAACTCATTTTTTTATTAAGAATATATATATATATATATATATATATATATATATATATATAAAGAAAAGAATAACTTTTTCTTTCATTTGAACCTTGATTGATTGGTTTTTGTTTATTGCTTCTTCTTTGTTCATGAATTTTTCTTCTCATGCTATGTTTCACTCATAGAAAAAAGAAGAAAAAAAGGAAAAAAAAAAAAAAAAAACAAAGAAAGAGAAAGAGAAAGAGAGATGGTAATTACTATTCAACCCTTTGTTGAAAGAAGTAAAAAAAAAATTTAAGTTTACTATAGAGATCGATAAATATTACAATATTTCGTGAATAATTTCAATATTTTGCTATTATTAAAATATTTTTTATAAAAAATATATCCTAGTTTTTTTGTTGATGGTTGTAGTTTTTTTTAAAAAATTTAAAAAAAGTCACATTTTACTCACTAATCTCTAATTTCACTTTAAACAAAAGTAGAATATTTTTTTGAAAAAATCACATGGTAAATATATGGCATTTTTAAATTTCCATTTCAAGATAAATGGAGAGATTTAGAGAAAAATCACATGGTAAATATATTGCACTTTTAAATGGATCCTAATAAATAATAAAAATATTTACAAAATATCATAAAAATTTTGATTTTATAAATTTTTTCAAAAGTTCTTTTCATTTACGATAACATTTTTTAATATTATCGAAAATTGTTTGTTATAAATAAAATATTTAAAAGAAAAAATGACTTGGTTTTAAACCATGTTGAATAAAGCTAATGGATTCTCAATAACTTTTAGTTTTTCTCAATCTAGTGAACCTCCATTGAAGTAAAATCTTAAGAAAAGTAATTACAATCGTCTAAAAAAGATTAATTGATAGAATTGATAGAAATGAAATATCTTACAAAAAAGAAAAATTGAGGTTGGAAAACTTATGAACTCAAATCTCAAAATTCCCCTGCATCCCCACCCCTATCTTTTTTCTTTTTCTTCCAGATCATATGATTTCTCCATCATCTCAAACTAACTTTTTTTTTGTTCTCTTTACAATATCAATTCTTAGAGTTGAATAAAACTTGATCTCAAAGGGTAATCAAATAAGGACAATCCTCTAATTTTGGAAGATGACAAATATATGTCACAAAATCTCCCAACTAGAATAAAACAATTCACAAACTTGTACCTACTAAGGCATTAGTGCAAGATCTTTGGGGATTGCATAAATATTTATGTTTTAGAGTAACATACACATTGAATGATTTTTTTCTTTACACGATAACACTCCGTGATATGTTATGATATGCAACAAGGACCAACCTATTCGATAAGAGTCATAAAGTGATAGAGTTATCAAATTTTGTGAATTATGTGAAATTGATCATGACTATGAAATAATACTAGCTGTGCCACATACTAGAATATCTCATCGTATATGTTGACATCCGAGGCGAGATGATCAAGCGAGATGAGATGTAATAAATGACACGATCTTTATCACATAATTAAATAATCAAACATTTTATTATTGTTTTACATTTAATTTTTCAACATAACCTTCCCATTAACTACATTTTTTTTTCATAATTAAATCTTTATATTTAATTACCAACAACTCTCTTTTGTCCCCTCACGGTATATAAACCCATTTCATTCTTCATTTGGTGTATGAGAAATCACAAGACTTATAGAGCTTCTCTTTGAAGGGTGACAACCTCTCGACGCCAAATTAAATATCCACAATTGTTCTCCTTTCGAAACACAGATGATGGAAGTTGTCTCGTCAAGGTGAAGTTTGTCTCCAAACTTCTTATTGCGCACGTTAGTCATATCCTTGCTTCTTGTCCTCTCTAGCCAAGTGATGAATATAGCTCAACTAATGTGACAAAAATTATAAGCTAAGCTTTTTATCAAGAATCTATCATAGATCCTAAACTACAAATAATACATTGACAAGTGAATAGTAAAGATATGATGGATTGAAAATGTATAAATGTGCAATGTATTAAAGAATATAGGCCTTCAGTCACTATACAATATGAACAAATATATTGCAAAGAAATATAAAAATGGAAAATACATAAATGATATTACAAGTTAGGGGAAAATAGGAAAATAATGGACTCTCCTCTACTCTGACCTCAAGCTTTCATTCACTGACTAACCGGAGAAGAGAACAGATAAACTTTTACACATAATAGAAAGGCTACTTCTTTCCACCTTCTCTCTAGGGTTTTGCCTATTCAGGTGTACGACTAGTCCATTCAGACATTTAACACCCTAGCCCATTCATGTCTCCTTCTTGGTGGTGATGAAATCCTTTTTATAGGCAGATTCAAACAGGAAACTTCTCTTCTCTTGAACATGTCAGCGCCAAAAGCACCCTATGTCAAATCACATCAATTCCATCTACCAATTTTTTCTTCTAGCGAACCTCTTCTCACATGCTGATAATTATATATTCTTATGTAGTATTCATGCGAGTTCCTCTACAATTCACTAATCTTCTTCTTTTGTTTAAATCCCGCATTAAGACGCTAAAAACAGGGTGAACAGACATGAATGCATATGTAAAGTGTATTTCTGAATATTTATGAATTTACAATTTAAGCTAGGTGTTTTGGCACATTTACTATGCATTTTAGGTCTCATTATTGTCTTTATAAATCTATAATAACTTGTATTTCTACAAGTTATCAGAATACACCAAAGAAGCATATGTACGTTATATTGTATCGTAAGTGCGTAATTATAAGAATTATATATATATTAACCCTTATACAATATATAACATCGAAAACCGTTATAAATATAGTTGTCAATGCAAGAGGAGATAAGAAAATCATTAGAAGATAAAGTTGAACTAATACCAGAGGCAATTATTTGTGAACAGGTTTTGGAAAACGATTAGGCCACACAAAAGGTCTTGGATGAAACACAACCCCTAATGTAGCAACGTGAGGTGAGAAACTTAAAAGAGGAAAATTTCATGTTGAAGTTAACAATTTCGAGTTTTCAAAATCAATTGACTAATATCAAAAAACAGTTTGGTGTGCAACAAAGGCAAGGAGATGAACCTTCAAACAACCAGGTCATTATGACAACTTTGAGTTATGGTTAGTGGATTTAGCAACTTAATTTGATTGTTGTATGTTTCAACAACTTTGAGTTATGAGATAGATCGAGAAAGGATGTTTCAACGATTTGTCATTCCAAACAATTTTCCTTCATTATGTGCCAACCCCGTAAAGTTATGAAAAATTGTCAAGAATAGTAAATTTGACAAAATATCTACAACATACAGTAAAATTTTAGATTCTATAAATAATAGAAACATTGATATGCTTCTATCAATGCATTGATAGAGAAATCTATTAGATT

mRNA sequence

ATGAGAAGTACTACTACTACTACTACACATGGGATAACAAAACGGACAAGGCTCATTAGAGTTCTAGGAAGAAGCTTGTTGGGAGTTATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAATCCCCACGTCTCATTGTGGAAACTGGCAAAGTCATAGCCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCTTTCACTGTCAAAAGCTACAACCCTAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACCCTCACGCCCAGAAACCAAACCGTCTTGTCGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAACCCAGAACTTCAATTCTCAGCTGAAGTCAGGTTTTGGAAAACGATTAGGCCACACAAAAGGTCTTGGATGAAACACAACCCCTAA

Coding sequence (CDS)

ATGAGAAGTACTACTACTACTACTACACATGGGATAACAAAACGGACAAGGCTCATTAGAGTTCTAGGAAGAAGCTTGTTGGGAGTTATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAATCCCCACGTCTCATTGTGGAAACTGGCAAAGTCATAGCCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCTTTCACTGTCAAAAGCTACAACCCTAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACCCTCACGCCCAGAAACCAAACCGTCTTGTCGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAACCCAGAACTTCAATTCTCAGCTGAAGTCAGGTTTTGGAAAACGATTAGGCCACACAAAAGGTCTTGGATGAAACACAACCCCTAA

Protein sequence

MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLSSAVQVNFEYPFGYTEEINPELQFSAEVRFWKTIRPHKRSWMKHNP

Homology

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BLAST of CsaV3_1G014210 vs. NCBI nr
Match: XP_011654126.1 (PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 6.1e-73
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60
           MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVR 150
           SSAVQVNFEYPFGYTEEINPELQFSAEVR
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVR 149

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BLAST of CsaV3_1G014210 vs. NCBI nr
Match: XP_011654134.1 (PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus] >KGN64866.1 hypothetical protein Csa_1G132760 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 1.8e-72
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60
           MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVRF 151
           SSAVQVNFEYPFGYTEEINPELQFSAEV +
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVSY 150

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BLAST of CsaV3_1G014210 vs. NCBI nr
Match: XP_008462348.1 (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVRF 151
            SAVQVNFEYPFGYTEEINPELQFSAEV +
Sbjct: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVSY 150

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BLAST of CsaV3_1G014210 vs. NCBI nr
Match: XP_011648454.1 (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus] >KGN64867.1 hypothetical protein Csa_1G132770 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.5e-47
Identity = 98/138 (71.01%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 13  TKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAHSSTISMLNATI 72
           TK+TR+IR++GRSLL VIFLV L M+ICWLVV PK+PR+ VETG+VIAH+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRIFVETGRVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLSSAVQVNFEYPF 132
            FTVK YNPNKRAS+H+  MRMIV +MG  FSS IP+F  TP NQTVLS AV+VNF+YPF
Sbjct: 85  VFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRF 151
           G+ EEINPEL FSAE+ +
Sbjct: 145 GHQEEINPELHFSAEISY 162

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BLAST of CsaV3_1G014210 vs. NCBI nr
Match: XP_008462337.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 9.8e-47
Identity = 105/162 (64.81%), Postives = 123/162 (75.93%), Query Frame = 0


Query: 1   MRSTTTTT------------THGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKS 60
           MRS TTT              +  TK+TR+IR++GR LL VIFLV L M+ICWLVV PK+
Sbjct: 1   MRSITTTKGEASSSRKSSKGQNETTKKTRIIRIIGRCLLSVIFLVGLAMVICWLVVFPKN 60

Query: 61  PRLIVETGKVIAHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIP 120
           PR +VETGKVIAH+ST +MLNATIAFTVK YNPNKRASIH+  MRMI+ +MG  FSSA+P
Sbjct: 61  PRFVVETGKVIAHNSTHNMLNATIAFTVKCYNPNKRASIHLHSMRMIITSMGQAFSSAMP 120

Query: 121 SFTLTPRNQTVLSSAVQVNFEYPFGYTEEINPELQFSAEVRF 151
            F  TP NQTVLS AV VNF+YPFG+ EEINPEL FSAE+ +
Sbjct: 121 MFMQTPGNQTVLSPAVDVNFDYPFGHREEINPELHFSAEISY 162

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BLAST of CsaV3_1G014210 vs. TAIR10
Match: AT5G22870.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 14  KRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAHSST-ISMLNATI 73
           +R  LI  +   +L +IF+ A+G +I WL   PK  R  VE   V   + T  + ++AT 
Sbjct: 21  RRPSLICYIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSATF 80

Query: 74  AFTVKSYNPNKRASIHMDYMRMIV 97
            FT++S+NPN R S++   + + V
Sbjct: 81  QFTIQSHNPNHRISVYYSSVEIFV 104

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BLAST of CsaV3_1G014210 vs. TAIR10
Match: AT4G01410.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 40.8 bits (94), Expect = 9.6e-04
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 25  SLLGVIF--LVALGMI--ICWLVVIPKSPRLIVETGKVIAHSSTI-SMLNATIAFTVKSY 84
           ++ G IF  LV LG+I  I WLV  P  PRL V    +   + T   +++ ++ F+V + 
Sbjct: 43  AICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLAR 102

Query: 85  NPNKRASIHMDYMRMIV 97
           NPN+R SIH D + M V
Sbjct: 103 NPNRRVSIHYDKLSMYV 119

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BLAST of CsaV3_1G014210 vs. TrEMBL
Match: tr|A0A0A0LY09|A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.2e-72
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60
           MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVRF 151
           SSAVQVNFEYPFGYTEEINPELQFSAEV +
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVSY 150

[Close]

BLAST of CsaV3_1G014210 vs. TrEMBL
Match: tr|A0A1S3CGS4|A0A1S3CGS4_CUCME (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVRF 151
            SAVQVNFEYPFGYTEEINPELQFSAEV +
Sbjct: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVSY 150

[Close]

BLAST of CsaV3_1G014210 vs. TrEMBL
Match: tr|A0A0A0LVK9|A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.0e-47
Identity = 98/138 (71.01%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 13  TKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAHSSTISMLNATI 72
           TK+TR+IR++GRSLL VIFLV L M+ICWLVV PK+PR+ VETG+VIAH+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRIFVETGRVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLSSAVQVNFEYPF 132
            FTVK YNPNKRAS+H+  MRMIV +MG  FSS IP+F  TP NQTVLS AV+VNF+YPF
Sbjct: 85  VFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRF 151
           G+ EEINPEL FSAE+ +
Sbjct: 145 GHQEEINPELHFSAEISY 162

[Close]

BLAST of CsaV3_1G014210 vs. TrEMBL
Match: tr|A0A1S3CGR5|A0A1S3CGR5_CUCME (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103500709 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 6.5e-47
Identity = 105/162 (64.81%), Postives = 123/162 (75.93%), Query Frame = 0


Query: 1   MRSTTTTT------------THGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKS 60
           MRS TTT              +  TK+TR+IR++GR LL VIFLV L M+ICWLVV PK+
Sbjct: 1   MRSITTTKGEASSSRKSSKGQNETTKKTRIIRIIGRCLLSVIFLVGLAMVICWLVVFPKN 60

Query: 61  PRLIVETGKVIAHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIP 120
           PR +VETGKVIAH+ST +MLNATIAFTVK YNPNKRASIH+  MRMI+ +MG  FSSA+P
Sbjct: 61  PRFVVETGKVIAHNSTHNMLNATIAFTVKCYNPNKRASIHLHSMRMIITSMGQAFSSAMP 120

Query: 121 SFTLTPRNQTVLSSAVQVNFEYPFGYTEEINPELQFSAEVRF 151
            F  TP NQTVLS AV VNF+YPFG+ EEINPEL FSAE+ +
Sbjct: 121 MFMQTPGNQTVLSPAVDVNFDYPFGHREEINPELHFSAEISY 162

[Close]

BLAST of CsaV3_1G014210 vs. TrEMBL
Match: tr|A0A1S3CGQ5|A0A1S3CGQ5_CUCME (uncharacterized protein LOC103500702 OS=Cucumis melo OX=3656 GN=LOC103500702 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 91/147 (61.90%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 10  HGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAHSSTISMLN 69
           HG  KRTR++R+ GR+LLG++ LVA+ MIICWL+V P++P LIVETGKVI HS T   LN
Sbjct: 24  HGAAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFPRNPDLIVETGKVIPHSLTDRKLN 83

Query: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLSSAVQVNFE 129
           ATIAFTV SYNPNK+ASI MD MRMIV +MG+ F S IPSFT  P+N+TVL+S +Q NF 
Sbjct: 84  ATIAFTVTSYNPNKKASIRMDSMRMIVTDMGLSFWSDIPSFTQPPKNKTVLNSTIQGNFI 143

Query: 130 YPFGYTEE------INPELQFSAEVRF 151
           YPFG+ +E      I+P+L+FSA+V +
Sbjct: 144 YPFGHMKELVKLEGISPDLRFSAKVSY 170

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654126.1	6.1e-73	100.00	PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus]	[more]
XP_011654134.1	1.8e-72	98.67	PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus] >KGN64866.1 hypothetic...	[more]
XP_008462348.1	1.8e-69	94.00	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
XP_011648454.1	1.5e-47	71.01	PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus] >KGN64867.1 hy...	[more]
XP_008462337.1	9.8e-47	64.81	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo]	[more]

BLAST of CsaV3_1G014210 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22870.1	1.1e-04	34.52	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G01410.1	9.6e-04	38.96	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of CsaV3_1G014210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G014210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY09\|A0A0A0LY09_CUCSA	1.2e-72	98.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132760 PE=4 SV=1	[more]
tr\|A0A1S3CGS4\|A0A1S3CGS4_CUCME	1.2e-69	94.00	protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1	[more]
tr\|A0A0A0LVK9\|A0A0A0LVK9_CUCSA	1.0e-47	71.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132770 PE=4 SV=1	[more]
tr\|A0A1S3CGR5\|A0A1S3CGR5_CUCME	6.5e-47	64.81	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103500709 PE=4 SV=1	[more]
tr\|A0A1S3CGQ5\|A0A1S3CGQ5_CUCME	1.5e-40	61.90	uncharacterized protein LOC103500702 OS=Cucumis melo OX=3656 GN=LOC103500702 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014210.1	CsaV3_1G014210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 75..151 e-value: 1.5E-5 score: 25.3
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 25..127
None	No IPR available	PANTHER	PTHR31852:SF1	LATE EMBRYOGENESIS ABUNDANT LEA HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED	coord: 25..127

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G014210	Silver-seed gourd	carcucB0192
CsaV3_1G014210	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G014210	Cucumber (Gy14) v1	cgycucB322
CsaV3_1G014210	Cucurbita maxima (Rimu)	cmacucB0188
CsaV3_1G014210	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G014210	Cucurbita maxima (Rimu)	cmacucB0694
CsaV3_1G014210	Cucurbita moschata (Rifu)	cmocucB0172
CsaV3_1G014210	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G014210	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G014210	Cucurbita pepo (Zucchini)	cpecucB0996
CsaV3_1G014210	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G014210	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G014210	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G014210	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G014210	Watermelon (Charleston Gray)	cucwcgB016
CsaV3_1G014210	Watermelon (Charleston Gray)	cucwcgB030
CsaV3_1G014210	Watermelon (97103) v1	cucwmB054
CsaV3_1G014210	Watermelon (97103) v1	cucwmB060
CsaV3_1G014210	Watermelon (97103) v1	cucwmB074
CsaV3_1G014210	Watermelon (97103) v2	cucwmbB002
CsaV3_1G014210	Watermelon (97103) v2	cucwmbB025
CsaV3_1G014210	Wax gourd	cucwgoB051