CsaV3_1G014160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionHistone H2B
Locationchr1 : 9614024 .. 9614452 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Homology
[Close]
BLAST of CsaV3_1G014160 vs. NCBI nr
Match: XP_004139453.1 (PREDICTED: histone H2B.7-like [Cucumis sativus] >KGN64858.1 Histone H2B [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. NCBI nr
Match: XP_011654070.1 (PREDICTED: histone H2B.7 [Cucumis sativus] >XP_011654073.1 PREDICTED: histone H2B.7 [Cucumis sativus] >KGN64852.1 Histone H2B [Cucumis sativus] >KGN64854.1 Histone H2B [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. NCBI nr
Match: XP_016903018.1 (PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. NCBI nr
Match: XP_022152883.1 (histone H2B.7 [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. NCBI nr
Match: XP_022964641.1 (histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucurbita maxima] >XP_023519436.1 histone H2B.7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. TAIR10
Match: AT5G02570.1 (Histone superfamily protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-44
Identity = 129/142 (90.85%), Postives = 130/142 (91.55%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEK P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKAP----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 132

[Close]
BLAST of CsaV3_1G014160 vs. TAIR10
Match: AT1G07790.1 (Histone superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]
BLAST of CsaV3_1G014160 vs. TAIR10
Match: AT2G28720.1 (Histone superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 8.1e-44
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 62  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 121

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 122 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]
BLAST of CsaV3_1G014160 vs. TAIR10
Match: AT5G59910.1 (Histone superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 8.1e-44
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]
BLAST of CsaV3_1G014160 vs. TAIR10
Match: AT3G46030.1 (Histone superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-43
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 56  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 115

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 116 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]
BLAST of CsaV3_1G014160 vs. Swiss-Prot
Match: sp|Q9LZ45|H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-43
Identity = 129/142 (90.85%), Postives = 130/142 (91.55%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEK P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKAP----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 132

[Close]
BLAST of CsaV3_1G014160 vs. Swiss-Prot
Match: sp|Q9LQQ4|H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]
BLAST of CsaV3_1G014160 vs. Swiss-Prot
Match: sp|P40283|H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]
BLAST of CsaV3_1G014160 vs. Swiss-Prot
Match: sp|Q1S9I9|H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 118

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]
BLAST of CsaV3_1G014160 vs. Swiss-Prot
Match: sp|Q9SI96|H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 62  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 121

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 122 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]
BLAST of CsaV3_1G014160 vs. TrEMBL
Match: tr|A0A0A0LV55|A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.6e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. TrEMBL
Match: tr|A0A1S4E463|A0A1S4E463_CUCME (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500805 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.6e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. TrEMBL
Match: tr|A0A0A0LST8|A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.6e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. TrEMBL
Match: tr|A0A2G2ZYA2|A0A2G2ZYA2_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=LOC107863599 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.9e-43
Identity = 123/142 (86.62%), Postives = 124/142 (87.32%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPK EKKPAEKKPAA  XXXXXXXXXXXXXXXXXXXX              ETYKIYIF
Sbjct: 1   MAPKVEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXGAAGDKKKRVKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]
BLAST of CsaV3_1G014160 vs. TrEMBL
Match: tr|A0A1U8G135|A0A1U8G135_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=T459_09055 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.9e-43
Identity = 123/142 (86.62%), Postives = 124/142 (87.32%), Query Frame = 0 

Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPK EKKPAEKKPAA  XXXXXXXXXXXXXXXXXXXX              ETYKIYIF
Sbjct: 1   MAPKVEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXGAAGDKKKRVKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139453.15.4e-46100.00PREDICTED: histone H2B.7-like [Cucumis sativus] >KGN64858.1 Histone H2B [Cucumis... [more]
XP_011654070.15.4e-46100.00PREDICTED: histone H2B.7 [Cucumis sativus] >XP_011654073.1 PREDICTED: histone H2... [more]
XP_016903018.15.4e-46100.00PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo][more]
XP_022152883.15.4e-46100.00histone H2B.7 [Momordica charantia][more]
XP_022964641.15.4e-46100.00histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucu... [more]
BLAST of CsaV3_1G014160 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02570.11.6e-4490.85Histone superfamily protein[more]
AT1G07790.13.6e-44100.00Histone superfamily protein[more]
AT2G28720.18.1e-4498.89Histone superfamily protein[more]
AT5G59910.18.1e-4498.89Histone superfamily protein[more]
AT3G46030.11.4e-4398.89Histone superfamily protein[more]
BLAST of CsaV3_1G014160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LZ45|H2B9_ARATH2.9e-4390.85Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3[more]
sp|Q9LQQ4|H2B1_ARATH6.6e-43100.00Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3[more]
sp|P40283|H2B11_ARATH1.5e-4298.89Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5[more]
sp|Q1S9I9|H2B1_MEDTR1.5e-4298.89Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3[more]
sp|Q9SI96|H2B3_ARATH1.5e-4298.89Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3[more]
BLAST of CsaV3_1G014160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LV55|A0A0A0LV55_CUCSA3.6e-46100.00Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1[more]
tr|A0A1S4E463|A0A1S4E463_CUCME3.6e-46100.00Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500805 PE=3 SV=1[more]
tr|A0A0A0LST8|A0A0A0LST8_CUCSA3.6e-46100.00Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1[more]
tr|A0A2G2ZYA2|A0A2G2ZYA2_CAPAN4.9e-4386.62Histone H2B OS=Capsicum annuum OX=4072 GN=LOC107863599 PE=3 SV=1[more]
tr|A0A1U8G135|A0A1U8G135_CAPAN4.9e-4386.62Histone H2B OS=Capsicum annuum OX=4072 GN=T459_09055 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR000558Histone_H2B
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014160.1CsaV3_1G014160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 126..139
score: 92.65
coord: 74..94
score: 75.74
coord: 96..113
score: 76.51
coord: 113..126
score: 92.45
coord: 55..73
score: 80.55
IPR000558Histone H2BSMARTSM00427h2b3coord: 45..141
e-value: 1.1E-72
score: 257.5
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 1..142
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 110..132
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 6..118
e-value: 3.1E-22
score: 79.2
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 2..142
e-value: 5.2E-57
score: 193.3
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 27..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availablePANTHERPTHR23428:SF97HISTONE H2B.11-RELATEDcoord: 1..142

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G014160Cla001053Watermelon (97103) v1cucwmB060
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014160Silver-seed gourdcarcucB0192
CsaV3_1G014160Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014160Cucumber (Gy14) v1cgycucB322
CsaV3_1G014160Cucurbita maxima (Rimu)cmacucB0188
CsaV3_1G014160Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G014160Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G014160Cucurbita moschata (Rifu)cmocucB0172
CsaV3_1G014160Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G014160Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G014160Cucurbita pepo (Zucchini)cpecucB0996
CsaV3_1G014160Wild cucumber (PI 183967)cpicucB001
CsaV3_1G014160Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G014160Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014160Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014160Watermelon (Charleston Gray)cucwcgB016
CsaV3_1G014160Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G014160Watermelon (97103) v1cucwmB074
CsaV3_1G014160Watermelon (97103) v2cucwmbB002
CsaV3_1G014160Watermelon (97103) v2cucwmbB025
CsaV3_1G014160Wax gourdcucwgoB051