CsaV3_1G014140 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014140
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 9609530 .. 9609981 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAATGTTTGTGGTAAAATGTTAGTTGAGAATAAATGTTGAAAAGATTACTATTGAGAATTAGAACAAAGAGAAGAGTAAAAATCAATCCACGTGGCAAAAGAATAGATGGTAATAAAGTTTTTAGAAATGGATATTATTAGTTTGTGAAATTTTCCTTTCAACCGTTCAAATAAATTGATTTCTCTTCCTCTTCTTCCTTTGCTTCAGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCCGCCGCGCCTCCTAGCCGCCCGTTCCTCCTCACGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTAGTCCGAAGCCTTCGCCGCTGCGACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGA

mRNA sequence

ATGATTGAATGTTTGTGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCCGCCGCGCCTCCTAGCCGCCCGTTCCTCCTCACGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTAGTCCGAAGCCTTCGCCGCTGCGACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGA

Coding sequence (CDS)

ATGATTGAATGTTTGTGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCCGCCGCGCCTCCTAGCCGCCCGTTCCTCCTCACGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTAGTCCGAAGCCTTCGCCGCTGCGACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGA

Protein sequence

MIECLCRTPLPSPSSLFTSHPPRLLAARSSSRCRLSDAQTSGADVSFAAAGVRRAAVWLFHTRSPKPSPLRLRCPSAAAGPVNH
Homology
[Close]
BLAST of CsaV3_1G014140 vs. NCBI nr
Match: KGN64857.1 (hypothetical protein Csa_1G132180 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MIECLCRTPLPSPSSLFTSHPPRLLAARSSSRCRLSDAQTSGADVSFAAAGVRRAAVWLF 60
          MIECLCRTPLPSPSSLFTSHPPRLLAARSSSRCRLSDAQTSGADVSFAAAGVRRAAVWLF
Sbjct: 1  MIECLCRTPLPSPSSLFTSHPPRLLAARSSSRCRLSDAQTSGADVSFAAAGVRRAAVWLF 60

Query: 61 HTRSPKPSPLRLRCPSAAAGPVNH 85
          HTRSPKPSPLRLRCPSAAAGPVNH
Sbjct: 61 HTRSPKPSPLRLRCPSAAAGPVNH 84

[Close]
BLAST of CsaV3_1G014140 vs. TrEMBL
Match: tr|A0A0A0LVJ7|A0A0A0LVJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132180 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.7e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MIECLCRTPLPSPSSLFTSHPPRLLAARSSSRCRLSDAQTSGADVSFAAAGVRRAAVWLF 60
          MIECLCRTPLPSPSSLFTSHPPRLLAARSSSRCRLSDAQTSGADVSFAAAGVRRAAVWLF
Sbjct: 1  MIECLCRTPLPSPSSLFTSHPPRLLAARSSSRCRLSDAQTSGADVSFAAAGVRRAAVWLF 60

Query: 61 HTRSPKPSPLRLRCPSAAAGPVNH 85
          HTRSPKPSPLRLRCPSAAAGPVNH
Sbjct: 61 HTRSPKPSPLRLRCPSAAAGPVNH 84

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014140 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64857.11.0e-39100.00hypothetical protein Csa_1G132180 [Cucumis sativus][more]
BLAST of CsaV3_1G014140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014140 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVJ7|A0A0A0LVJ7_CUCSA6.7e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014140.1CsaV3_1G014140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014140Silver-seed gourdcarcucB0192
CsaV3_1G014140Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014140Cucumber (Gy14) v1cgycucB322
CsaV3_1G014140Cucurbita maxima (Rimu)cmacucB0188
CsaV3_1G014140Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G014140Cucurbita moschata (Rifu)cmocucB0172
CsaV3_1G014140Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G014140Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G014140Cucurbita pepo (Zucchini)cpecucB0996
CsaV3_1G014140Wild cucumber (PI 183967)cpicucB001
CsaV3_1G014140Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G014140Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014140Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014140Watermelon (Charleston Gray)cucwcgB016
CsaV3_1G014140Watermelon (97103) v1cucwmB060
CsaV3_1G014140Watermelon (97103) v2cucwmbB002
CsaV3_1G014140Wax gourdcucwgoB051