CsaV3_1G014050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 9555054 .. 9555522 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTGTTGTAACTCTACATGTCGTCTACCATCTCCGGTCATTGTCACGTACCAGATCACCGTCGACACTGGTCTCCATGGCACACGTTGTTCGTTTGCCATAACGTCTCTCCCTGTCACGTTTGAAGCCCAGTCGCTATCCACACAAAGCCTGTCGTGGAGTTTGAGCCTAGTCTTATTTCAGGTTGAACGTTCGAGTTCTCTCTGTCAAGCCGACATTCCTCCATTCACCGTTTGTCGAAGCTCCACCTAAAGCCAACCTTCCTTCCAGCATGCTTCCCTTAGCCATCCATCTCTATCCCGAGCTGCGACACTGTTCACCAACTGCCGAGCCAAATTCCCTAACTCAAGTCGTCAGCTTCAGTCCTAAGTTGTGCGCGTCGTTCTACTTTTTGTCGAGTGTCCAAGCTATATCCAAGTTGATCCTTCTCCCTTTCAGTCAAGAGCAAGTCGTAACCTCCTCCTAG

mRNA sequence

ATGCATTGTTGTAACTCTACATGTCGTCTACCATCTCCGGTCATTGTCACGTACCAGATCACCGTCGACACTGGTCTCCATGGCACACGTTGTTCGTTGAACGTTCGAGTTCTCTCTGTCAAGCCGACATTCCTCCATTCACCGTTTGTCGAAGCTCCACCTAAAGCCAACCTTCCTTCCAGCATGCTTCCCTTAGCCATCCATCTCTATCCCGAGCTGCGACACTGTTCACCAACTGCCGAGCCAAATTCCCTAACTCAAGTCGTCAGCTTCAGTCCTAAGTTGTGCGCGTCGTTCTACTTTTTGTCGAGTGTCCAAGCTATATCCAAGTTGATCCTTCTCCCTTTCAGTCAAGAGCAAGTCGTAACCTCCTCCTAG

Coding sequence (CDS)

ATGCATTGTTGTAACTCTACATGTCGTCTACCATCTCCGGTCATTGTCACGTACCAGATCACCGTCGACACTGGTCTCCATGGCACACGTTGTTCGTTGAACGTTCGAGTTCTCTCTGTCAAGCCGACATTCCTCCATTCACCGTTTGTCGAAGCTCCACCTAAAGCCAACCTTCCTTCCAGCATGCTTCCCTTAGCCATCCATCTCTATCCCGAGCTGCGACACTGTTCACCAACTGCCGAGCCAAATTCCCTAACTCAAGTCGTCAGCTTCAGTCCTAAGTTGTGCGCGTCGTTCTACTTTTTGTCGAGTGTCCAAGCTATATCCAAGTTGATCCTTCTCCCTTTCAGTCAAGAGCAAGTCGTAACCTCCTCCTAG

Protein sequence

MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPSSMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQVVTSS

Homology

[Close]

BLAST of CsaV3_1G014050 vs. NCBI nr
Match: KGN64848.1 (hypothetical protein Csa_1G132090 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 3.9e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60
           MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS
Sbjct: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60

Query: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120
           SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ
Sbjct: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120

Query: 121 VVTSS 126
           VVTSS
Sbjct: 121 VVTSS 125

[Close]

BLAST of CsaV3_1G014050 vs. TrEMBL
Match: tr|A0A0A0LSS7|A0A0A0LSS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132090 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60
           MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS
Sbjct: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60

Query: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120
           SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ
Sbjct: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120

Query: 121 VVTSS 126
           VVTSS
Sbjct: 121 VVTSS 125

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64848.1	3.9e-64	100.00	hypothetical protein Csa_1G132090 [Cucumis sativus]	[more]

BLAST of CsaV3_1G014050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G014050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G014050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSS7\|A0A0A0LSS7_CUCSA	2.6e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132090 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014050.1	CsaV3_1G014050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G014050	Silver-seed gourd	carcucB0192
CsaV3_1G014050	Silver-seed gourd	carcucB0363
CsaV3_1G014050	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G014050	Cucumber (Gy14) v1	cgycucB322
CsaV3_1G014050	Cucurbita maxima (Rimu)	cmacucB0188
CsaV3_1G014050	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G014050	Cucurbita moschata (Rifu)	cmocucB0172
CsaV3_1G014050	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G014050	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G014050	Cucurbita pepo (Zucchini)	cpecucB0996
CsaV3_1G014050	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G014050	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G014050	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G014050	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G014050	Watermelon (Charleston Gray)	cucwcgB016
CsaV3_1G014050	Watermelon (97103) v1	cucwmB060
CsaV3_1G014050	Watermelon (97103) v2	cucwmbB002
CsaV3_1G014050	Wax gourd	cucwgoB051