CsaV3_1G013190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 8515412 .. 8516667 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAAGAGGAAATTTCTCTCTATATAATATTAATGGTTACTTCTTAATTGAAACGACGATATTTTGTTTAATCTCATTTTAAATTACTCTTAGTGGTGAAAAAGAACATAGCTCATTTTTCATATATCAAAGTGTATTAGCCCCGTGAAGTTTGTAGTTTGAATTTTCCTACTCAATTATACTTTAAAAAAAGTTACTTTATTAATATATTATTTTGTTGAGTAATATTTAAATATAAAAAGACAACAATACAATCGTTACACGTGCAAATGCATGTTAATATTTTATAGTATTGAAAAATAAAAATATACATTAAATGGTTTAGTTATTAATTTCAAATATATCAAATATAATTATAATGATTTTTAATAAGTTAGGGAGTAGTAAGAATTAGAAAAGAAAAAAAATAGAAAACTTCAAATTTTGGTGAACTTGAGACGCGAGACCGACCCGTTAGAAATCACACTCCCTTTCTTCATCTCTCGTTGCTGCAGTACCGCCGCTGCTGGGTGTTTCTGTTTCTCCCTCTCTTTCTTACAGCTCTCTCTTTCTCACTGTTCGCTGGTGGGTTTAATTTATTTGGTGTCATCTAACTGTCACCTCATTTACAATCAGCACATTATCCTACAAATTTTCTCATTTTTTATGTTCAACCTACAGTTTTAGAGAAATTATTTGATGGAATTCTTTCCTTGGGTACAAAGAACGGTCTTCCTATTTTGGGTCCATAGTATATTGCATTCTTAGCATAATCATATACCAAAGCATACCCAATAGATTTTCCACCACCAAGGGAAGTTCGAAACTTGAAAACAAAGATTGCATGTGGTGAAGGTTGTAATATATTTAGAACTACTCTGTTTGTAGCTTTAGGTTGTTATTGGATTCATTTGAACACCATTCTGAAAGTTCCAAGTCTATTTTGCAACTCTTGGGAACTCTCTTGGTTGTAGTTTGGGACCAATTCACAGTATTTGAATTGAGGTTTAGGGGCAACTCTGAATGAAGTTTTGAGCTAAGGTTTTAGGGAAACCTTGTTTTCATCGTTTCATTAGTCTTTTGAATAGCTTAGAAGCACTCCACAACGTCAATTGATTAGTTCTTACTTGTAGAGTCTAATTACTTGTGTGCTAGCATGCTACGTGCTTCATTTATGTTGTGTTATATGACTTACACGAACTCATTTATAGGATCACTACGTGCGGTGATATTTGTGTTTTGTTATACGACTTCTCTTCGACTATTGTCATAG

mRNA sequence

ATGGTTGAAGAGGAAATTTCTCTCTATATAATATTAATGAAAACTTCAAATTTTGGTGAACTTGAGACGCGAGACCGACCCGTTAGAAATCACACTCCCTTTCTTCATCTCTCGTTGCTGCAGTACCGCCGCTGCTGGGTGTTTCTGTTTCTCCCTCTCTTTCTTACAGCTCTCTCTTTCTCACTGTTCGCTGGATCACTACGTGCGGTGATATTTGTGTTTTGTTATACGACTTCTCTTCGACTATTGTCATAG

Coding sequence (CDS)

ATGGTTGAAGAGGAAATTTCTCTCTATATAATATTAATGAAAACTTCAAATTTTGGTGAACTTGAGACGCGAGACCGACCCGTTAGAAATCACACTCCCTTTCTTCATCTCTCGTTGCTGCAGTACCGCCGCTGCTGGGTGTTTCTGTTTCTCCCTCTCTTTCTTACAGCTCTCTCTTTCTCACTGTTCGCTGGATCACTACGTGCGGTGATATTTGTGTTTTGTTATACGACTTCTCTTCGACTATTGTCATAG

Protein sequence

MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSFSLFAGSLRAVIFVFCYTTSLRLLS
Homology
[Close]
BLAST of CsaV3_1G013190 vs. NCBI nr
Match: KGN64771.1 (hypothetical protein Csa_1G096060 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60
          MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF
Sbjct: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60

Query: 61 SLFAGSLRAVIFVFCYTTSLRLLS 85
          SLFAGSLRAVIFVFCYTTSLRLLS
Sbjct: 61 SLFAGSLRAVIFVFCYTTSLRLLS 84

[Close]
BLAST of CsaV3_1G013190 vs. TrEMBL
Match: tr|A0A0A0LXP5|A0A0A0LXP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G096060 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60
          MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF
Sbjct: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60

Query: 61 SLFAGSLRAVIFVFCYTTSLRLLS 85
          SLFAGSLRAVIFVFCYTTSLRLLS
Sbjct: 61 SLFAGSLRAVIFVFCYTTSLRLLS 84

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013190 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64771.12.1e-37100.00hypothetical protein Csa_1G096060 [Cucumis sativus][more]
BLAST of CsaV3_1G013190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXP5|A0A0A0LXP5_CUCSA1.4e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G096060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013190.1CsaV3_1G013190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013190Wax gourdcucwgoB051
CsaV3_1G013190Silver-seed gourdcarcucB0474
CsaV3_1G013190Cucumber (Gy14) v2cgybcucB002
CsaV3_1G013190Cucumber (Gy14) v1cgycucB332
CsaV3_1G013190Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013190Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013190Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013190Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013190Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013190Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013190Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013190Bottle gourd (USVL1VR-Ls)cuclsiB025
CsaV3_1G013190Bottle gourd (USVL1VR-Ls)cuclsiB053
CsaV3_1G013190Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013190Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G013190Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013190Watermelon (97103) v1cucwmB015
CsaV3_1G013190Watermelon (97103) v2cucwmbB032