CsaV3_1G013120 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013120
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Locationchr1 : 8464301 .. 8466966 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCAAGGGCAGAGATTACATGGGTAGGTTTCAAATGCAAGAAGAAAAAGCAAAAGGGTATGGAGGTACACCGTTAATTAAGCTGAAACAGAGTGAGAATGGGTAGAAGTTTGAAGGTTGAGAAGGAAAGTTATAGAAAGAAGGAGATAGAGTGGCTGAAGTGAAAAGGGTGTGGGTGTGAAGGTTGAAGAAGTTGAGACGGTTGTTAATGGAAGCAAGATAGAGAGGAGGAGTGATGGCAGATGAGAGAAAAGAGGAACCACACCCGAGAGAGAAGAACAAATGAATTTGCCTTAGTATATTATTTCTTTAATTATCATAGTTCTAAATTAGAAAACTTTCTAAATTCTAATTTGTAAATAATAACAATAACAATAAATCTATTTACACTTAATAACAAAAAAAGAAAAAAAACATTACACATTTATAATTAAAATAATGGTTAAGATTAGAAGATTGGAGAAAATATTTATAATAAATTTTGTTTATAAATAGTTTGCTAATTTTTGTGAAAAAACTCCTAAAATAATTGTTCTTAAATTTGATTTATTTTTAATTACAACCTTGCTATAATCTCTCTTCCTGCTCCACTACAGCCCAGCCGCAGCCCCTCTCTTCGGTGAGCTTCTTTGAACCGCATACGAACGGTGCCCACGACACCGTATCGCCCAAGAGCACAGTGGCGGACTACACCCGACACGTTTGCTTGGCCAATAGCTTGGAGCAACTGTGAGTGACGCCACCAACGTCTTCTGGCTTTTTTAGCACCGTTTTCTCTAGTTCAAGGAGTTTCGGTACTTACCCATTCTATTTCAACATTAGATTTGAGTTACCCACTTCTTAACGGCTCCAAACATGTAGGATTGAACGTATTCGGACGCCAACCAGCAAAGTTTCAAGTCGTTTGGATAAGTTTCTGCGGGGGTAAGAATGGTCTAAATTTCCTTTTGAACTTGTTTAAGATCCTTTATTTGGACACTTTTCACCCTTTTGGATTAGATTTAGATGGTGTAAATTAGTCTATAACTCTTGGTATGCTTAATTTGTGGTTTAAGGTGAGAGATTTTTGAGGTGGATAATTGAAGAATCATGAAACTAGTCTGTCTAATTTTATCTGTTAACTTCTCATGATTGATATTTCAATTCTATAAAGTTGGTGGAGAAAAGATTTTAACTTCTTGGATCCGTTGATTATGTAGAATTTCGGCTTTTTTTTTTTTATGTTATCAAATTTTTGGTTTATTTTCTTTGATATTCTCAATTTATTTACCTTCATTGCTAATCAAGATGGTATTTTGTTTGGTTTTCTATTTTTTAAATAGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGAGTATGACCTCTTATTCAGTTATTCTTGAGTGAATATTTTGAAATGTTAACATGACATGGACAAGCCAAAGAATTTGCAGTTCTTGGACTACTTATCTTTTCTAACCATTTCATCACTGATTTCTATTAATTCGTGACATAACTAATTAAACAGATTCTTGGTTCTTGTGAACATATCATCAAAAAGGTCCTTGAAAAGTTAATTAGGATCTAGCTGGTTTCGATTATTGTTATTTATTCTTTAGTAAATCATATTCAGACATACTTTTAAATGGCTTGCAATGATCTTGCAGTCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTAATTTGTCTCTTTAAAAGTGGAGCCGATTGGTTCCCATTTAGGACATGTTTTCTAATGGTTAGATTTGGTCTTTCTGTTTTTATGCTTTATACACATCCAATCTATGCATCCATGAGATATATAGCTTATGGATCTATGGGAAGTGTGATCCTCTTTAAAGAAAAATCTTTCAGTAAAATCACCTTGTTGCTTAGCTAGAACCAACCCCGTTATTTTTATAAGCATATAAATATATGTTTTAGTATTCATATGAAAGGTTGTATCTATTTAGTTTCATAACTTTAACAAGATTCAATTGTCTATTTAAAATTTGAATAGTTAACCATCATGGATTGGTGTACTGGTTAAAAAGGAGATATAGTCTCAATAGCTAATTAAGACGTCATGGGTTCAATCCATGGTGGCTACCTACCTAAGAGTTAATTTTCTACGACTTGGCAATTAGGACATACCCACTATTGTCTAATCAACAATAATGTTAATAACTATGACTACACATGACTATACATGATTAATTATACTTGCAAAGTGTGCAAACCATATTTAAAACTTGAAATACTTAGGCGCAACCATAGTTGGAGTTCCATTATTGATTACTAGGGAAAACAAAGCACATGGAAATATGGTAGGAGCAATATAGCAAACAGAAGACTATCAGCAATTTAGCATTACTGAAAGAAAGGTTAATTATGGTTGAATTAAGCTGGATTTTTTATTGAACATGGTAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAG

mRNA sequence

ATGAGTTCAAGGGCAGAGATTACATGGGTAGGTTTCAAATGCAAGAAGAAAAAGCAAAAGGCCCAGCCGCAGCCCCTCTCTTCGGTGAGCTTCTTTGAACCGCATACGAACGGTGCCCACGACACCGTATCGCCCAAGAGCACAGTGGCGGACTACACCCGACACGTTTGCTTGGCCAATAGCTTGGAGCAACTCACCGTTTTCTCTAGTTCAAGGAGTTTCGGATTGAACGTATTCGGACGCCAACCAGCAAAGTTTCAAGTCGTTTGGATAAGTTTCTGCGGGGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGATCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAG

Coding sequence (CDS)

ATGAGTTCAAGGGCAGAGATTACATGGGTAGGTTTCAAATGCAAGAAGAAAAAGCAAAAGGCCCAGCCGCAGCCCCTCTCTTCGGTGAGCTTCTTTGAACCGCATACGAACGGTGCCCACGACACCGTATCGCCCAAGAGCACAGTGGCGGACTACACCCGACACGTTTGCTTGGCCAATAGCTTGGAGCAACTCACCGTTTTCTCTAGTTCAAGGAGTTTCGGATTGAACGTATTCGGACGCCAACCAGCAAAGTTTCAAGTCGTTTGGATAAGTTTCTGCGGGGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGATCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAG

Protein sequence

MSSRAEITWVGFKCKKKKQKAQPQPLSSVSFFEPHTNGAHDTVSPKSTVADYTRHVCLANSLEQLTVFSSSRSFGLNVFGRQPAKFQVVWISFCGAMEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK
Homology
[Close]
BLAST of CsaV3_1G013120 vs. NCBI nr
Match: XP_004147276.2 (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_011653666.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN64764.1 hypothetical protein Csa_1G095010 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 201
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]
BLAST of CsaV3_1G013120 vs. NCBI nr
Match: XP_023522054.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo] >XP_023524948.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 9.7e-49
Identity = 96/104 (92.31%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSFTDETKSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 201
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KLT PV DINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]
BLAST of CsaV3_1G013120 vs. NCBI nr
Match: XP_022948356.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita moschata] >XP_022998825.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 2.8e-48
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSFTDE+KSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 201
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KLT PV DINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]
BLAST of CsaV3_1G013120 vs. NCBI nr
Match: XP_022150895.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSF+DE+KSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 201
           D AREVLKD+CQNLMVVCQHVRNTFDK+VLD KLT PV DINIK
Sbjct: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104

[Close]
BLAST of CsaV3_1G013120 vs. NCBI nr
Match: XP_004145267.1 (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN65775.1 hypothetical protein Csa_1G527910 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 6.9e-47
Identity = 97/108 (89.81%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSFTDETKSTFS+ADEDHTLAN LR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT----NPVRDINIK 201
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT     PV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]
BLAST of CsaV3_1G013120 vs. TAIR10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit)

HSP 1 Score: 88.2 bits (217), Expect = 6.3e-18
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 131 PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK 190
           PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

[Close]
BLAST of CsaV3_1G013120 vs. TAIR10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like)

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-06
Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 0 

Query: 101 SFTDETK----STFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 160
           S+  +TK    ++F+V  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     
Sbjct: 20  SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR----- 79

Query: 161 DPAREVLKDACQNLMVV 174
           DP     KD  +NL VV
Sbjct: 80  DP-----KDWFRNLKVV 86

[Close]
BLAST of CsaV3_1G013120 vs. Swiss-Prot
Match: sp|Q5XK67|RPAC2_XENLA (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-17
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0 

Query: 104 DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 163
           +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E 
Sbjct: 20  EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79

Query: 164 LKDACQNLMVVCQHVRNTFDKAVLDVK 190
            +     L+ VCQHV NTF+ ++ + K
Sbjct: 80  FRRGLNELVDVCQHVLNTFETSIKEYK 106

[Close]
BLAST of CsaV3_1G013120 vs. Swiss-Prot
Match: sp|P0DPB6|RPAC2_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-16
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 157 D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK 190
             PA E  +     LM VCQHV + F+ ++ D K
Sbjct: 89  TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122

[Close]
BLAST of CsaV3_1G013120 vs. Swiss-Prot
Match: sp|Q1RMG8|RPAC2_BOVIN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.6e-16
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 157 D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK 190
             PA E  +    +LM VCQHV + F+ ++ + K
Sbjct: 89  ALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122

[Close]
BLAST of CsaV3_1G013120 vs. Swiss-Prot
Match: sp|Q6DRI4|RPAC2_DANRE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.6e-16
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0 

Query: 104 DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 163
           DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E 
Sbjct: 19  DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78

Query: 164 LKDACQNLMVVCQHVRNTFDKAVLDVK 190
           L++   NL  VC+HV  TF+  + + K
Sbjct: 79  LRNGLNNLTDVCKHVLQTFEARMKEFK 105

[Close]
BLAST of CsaV3_1G013120 vs. Swiss-Prot
Match: sp|P28000|RPAC2_YEAST (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC19 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 104 DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREV 163
           D T ++F + +EDHTL N LRY + ++P V FCGYSIPHPS+N +NIR+QT G+  A + 
Sbjct: 57  DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116

Query: 164 LKDACQNLMVVCQHVRNTFDKAV 186
           L+   ++LM +C  V + F + +
Sbjct: 117 LQKGLKDLMDLCDVVESKFTEKI 139

[Close]
BLAST of CsaV3_1G013120 vs. TrEMBL
Match: tr|A0A0A0LUT5|A0A0A0LUT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.9e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 201
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]
BLAST of CsaV3_1G013120 vs. TrEMBL
Match: tr|A0A0A0LV21|A0A0A0LV21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.6e-47
Identity = 97/108 (89.81%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSFTDETKSTFS+ADEDHTLAN LR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT----NPVRDINIK 201
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT     PV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]
BLAST of CsaV3_1G013120 vs. TrEMBL
Match: tr|A0A1S3C5G1|A0A1S3C5G1_CUCME (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=LOC103497108 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.0e-47
Identity = 96/108 (88.89%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT----NPVRDINIK 201
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT     P  DINI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]
BLAST of CsaV3_1G013120 vs. TrEMBL
Match: tr|K7MV80|K7MV80_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G281100 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.9e-42
Identity = 79/99 (79.80%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 93  FCGAMEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRV 152
           +CGAMEHGS+TD++KSTFS+ DEDHT AN +R+TLNQDPRV+FCGYSIPHPSDNRVNIRV
Sbjct: 25  WCGAMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRV 84

Query: 153 QTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT 192
           QTTGDP+REVLKDACQ+LM++CQHVR+TFDKAV D K++
Sbjct: 85  QTTGDPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKIS 123

[Close]
BLAST of CsaV3_1G013120 vs. TrEMBL
Match: tr|D7SK51|D7SK51_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g05830 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.9e-42
Identity = 80/104 (76.92%), Postives = 98/104 (94.23%), Query Frame = 0 

Query: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156
           MEHGSF+D +KSTFS++DEDHTLAN++R+TLNQDPRV FCGYSIPHPSD RVNIRVQTTG
Sbjct: 1   MEHGSFSDHSKSTFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTG 60

Query: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 201
           D AREVLKDACQ+LM++CQHVR+TFDKAV+D K++ PV+D++I+
Sbjct: 61  DSAREVLKDACQDLMLMCQHVRSTFDKAVVDYKMSKPVKDMSIE 104

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013120 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147276.22.9e-53100.00PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus... [more]
XP_023522054.19.7e-4992.31DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp.... [more]
XP_022948356.12.8e-4891.35DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita moschata] >XP_02... [more]
XP_022150895.11.1e-4790.38DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia][more]
XP_004145267.16.9e-4789.81PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus... [more]
BLAST of CsaV3_1G013120 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G29540.36.3e-1869.49RNApolymerase 14 kDa subunit[more]
AT3G52090.27.2e-0637.66DNA-directed RNA polymerase, RBP11-like[more]
BLAST of CsaV3_1G013120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5XK67|RPAC2_XENLA6.7e-1747.13DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G... [more]
sp|P0DPB6|RPAC2_HUMAN2.5e-1643.62DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=... [more]
sp|Q1RMG8|RPAC2_BOVIN9.6e-1642.55DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=PO... [more]
sp|Q6DRI4|RPAC2_DANRE9.6e-1647.13DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=p... [more]
sp|P28000|RPAC2_YEAST1.3e-1545.78DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae... [more]
BLAST of CsaV3_1G013120 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUT5|A0A0A0LUT5_CUCSA1.9e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=4 SV=1[more]
tr|A0A0A0LV21|A0A0A0LV21_CUCSA4.6e-4789.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=4 SV=1[more]
tr|A0A1S3C5G1|A0A1S3C5G1_CUCME6.0e-4788.89DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=... [more]
tr|K7MV80|K7MV80_SOYBN9.9e-4279.80Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G281100 PE=4 SV=1[more]
tr|D7SK51|D7SK51_VITVI9.9e-4276.92Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g05830 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR033898RNAP_AC19
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR036603RBP11-like
IPR009025RBP11-like_dimer
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006383 transcription from RNA polymerase III promoter
biological_process GO:0006360 transcription from RNA polymerase I promoter
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005736 DNA-directed RNA polymerase I complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0001054 RNA polymerase I activity
molecular_function GO:0001056 RNA polymerase III activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013120.1CsaV3_1G013120.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 108..179
e-value: 5.4E-29
score: 99.7
IPR036603RNA polymerase, RBP11-like subunitGENE3DG3DSA:3.30.1360.10coord: 94..188
e-value: 2.1E-32
score: 112.6
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILYSSF55257RBP11-like subunits of RNA polymerasecoord: 104..186
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 97..184
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 97..184
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 112..143
IPR033898DNA-directed RNA polymerases I and III subunit AC19CDDcd07029RNAP_I_III_AC19coord: 98..181
e-value: 4.9022E-42
score: 137.749

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013120Cucsa.207480Cucumber (Gy14) v1cgycucB332
CsaV3_1G013120CsGy1G013050Cucumber (Gy14) v2cgybcucB002
CsaV3_1G013120Cla005060Watermelon (97103) v1cucwmB015
CsaV3_1G013120ClCG03G002440Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013120Lsi02G014510Bottle gourd (USVL1VR-Ls)cuclsiB025
CsaV3_1G013120Cla97C03G053490Watermelon (97103) v2cucwmbB032
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013120Silver-seed gourdcarcucB0474
CsaV3_1G013120Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013120Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013120Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013120Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013120Cucurbita pepo (Zucchini)cpecucB0002
CsaV3_1G013120Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013120Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013120Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013120Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013120Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G013120Wax gourdcucwgoB051