CsaV3_1G013050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G013050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	LOB domain-containing protein 1-like
Location	chr1 : 8399408 .. 8400967 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATTTCAACTTACGACGTCATCTCTTCTTCTTCACTTCGTCTCGTCTCGTCTCTCTCTATATATTATATTCTTCGTTCTTCTTCACAGCCAAAACCAACTCCATCTCTCTCTCTCTCTACTGACTCTAAAATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGTACTTCCTTGATCCCTAATTTTCTGTTTCTCTCTTTCAAATTTCGCTGTCTTTTCTTCTTGTTTCTATGTTTGAAAATTATGAATTCCGTTATTGAAATTGAAAATTGACCTTAACAACTTAACGAAAAACCATCGTTCTGGCTGGAATGAAGTTTGACGAATTCACAATCCTATTATGTTTGATTGCTTTTGCTTGATGATAATTTGGAGCTATTACGTTCATACATCATGAAAATTGGTAGAATCAAATGAAAACACCCAACTGTTCGATTAATGCCCTCGAACAATCCATCATATTGAATGTTTTATTGAATTCTTCAGGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGAAAAAGAAAAACTTGAGATTTCTAAGACAAAGGTTTTGGGAAGTCAAAGTTGGATTGGTTTTGAATAGAATATAGGAAAGTTAAGTAGTTGAATATTGGGTAATATTAGGCAGTTGTTAGGTTAGATGGGTTCCTCATTTGCTCCCTTAAAACCAAGAAAAGTGGAGGGAAGAAAAAGGGATGATGTTTACTAGATAGAGACTAGATTAGTGCCAAATATATTATATCTTGGTATATATTTTCTTCTTCTTCTTCTTTGTTTATTTTTGGTTACCTACCATTAACTTCTTAACATTGATGTGTGAAAGAAAAGAAACATCTTTATCAAAATGTCTTTACTCAAAGTGGTGTCAATTGTTGCAACCCCCATTTTGAAAATGACCAAAGATGTTCCTAGATGTAAGATAAGTCTACCTCTGCTAAAAAAATCAAATATTTATTTTCAAAGTGTATAATACAAGTTTTATGTCAAATGGAT

mRNA sequence

ATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Coding sequence (CDS)

ATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Protein sequence

MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT

Homology

[Close]

BLAST of CsaV3_1G013050 vs. NCBI nr
Match: XP_004147299.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 4.9e-88
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MESTDTKSXXXXXXXXXXXXXXXXXXXXXXXXQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           MESTDTKSXXXXXXXXXXXXXXXXXXXXXXXXQAHVVVTPCAACKILRRRCTQKCVLAPY
Sbjct: 1   MESTDTKSXXXXXXXXXXXXXXXXXXXXXXXXQAHVVVTPCAACKILRRRCTQKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120
           FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNS 180
           QLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNS
Sbjct: 121 QLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNS 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]

BLAST of CsaV3_1G013050 vs. NCBI nr
Match: XP_008463550.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 167/176 (94.89%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 33  QAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 92
           QA VVV+PCAACKILRRRC +KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ
Sbjct: 30  QAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 89

Query: 93  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVA 152
           RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVA
Sbjct: 90  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVA 149

Query: 153 LICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           LICKELAQTPPPMSS SLLP+HRSLDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 150 LICKELAQTPPPMSSLSLLPDHRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of CsaV3_1G013050 vs. NCBI nr
Match: KGN64755.1 (hypothetical protein Csa_1G088450 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 9.0e-74
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 52  TQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 111
           T KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP
Sbjct: 9   TMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 68

Query: 112 VYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLL 171
           VYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLL
Sbjct: 69  VYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLL 128

Query: 172 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 129 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of CsaV3_1G013050 vs. NCBI nr
Match: XP_022157927.1 (LOB domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 268.9 bits (686), Expect = 1.5e-68
Identity = 145/175 (82.86%), Postives = 154/175 (88.00%), Query Frame = 0


Query: 34  AHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQR 93
           A VVV+PCAACKILRRRC +KCVLAPYFPPSDP KFTIAHR+FGASNIIKLL DLP+SQR
Sbjct: 32  AGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPFKFTIAHRVFGASNIIKLLQDLPESQR 91

Query: 94  ADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVAL 153
           ADAVSSLVYEASARIRDPVYGCAGAICQLQKQIN XXXXXXXXXXXX   HCHQ +LVAL
Sbjct: 92  ADAVSSLVYEASARIRDPVYGCAGAICQLQKQINEXXXXXXXXXXXXVNMHCHQASLVAL 151

Query: 154 ICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           ICKELAQTPPP+      P+HRSLDN+FNI ATPQSYQ YT    DSNIW+PLWT
Sbjct: 152 ICKELAQTPPPVPP----PDHRSLDNNFNI-ATPQSYQNYTPFLEDSNIWEPLWT 201

[Close]

BLAST of CsaV3_1G013050 vs. NCBI nr
Match: XP_022998902.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 247.7 bits (631), Expect = 3.6e-62
Identity = 128/176 (72.73%), Postives = 135/176 (76.70%), Query Frame = 0


Query: 33  QAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 92
           QA VVVTPCAACKILRRRC +KCVLAPYFPPSDPLKFTIAHR+FGASNIIKLL DLP+SQ
Sbjct: 29  QAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQ 88

Query: 93  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVA 152
           RADAVSSLVYEASARIRDPVYGCAGAIC LQKQIN                 CHQ NLVA
Sbjct: 89  RADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVA 148

Query: 153 LICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           LICKEL QTP P       P+H SLDN+F+  ATPQSY     LF DSNIW+ LWT
Sbjct: 149 LICKELTQTPAPTPP----PDHCSLDNNFS-TATPQSY----PLFDDSNIWEALWT 195

[Close]

BLAST of CsaV3_1G013050 vs. TAIR10
Match: AT1G07900.1 (LOB domain-containing protein 1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37
Identity = 70/89 (78.65%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 36  VVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRAD 95
           VV++PCAACKILRRRC ++CVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR D
Sbjct: 29  VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query: 96  AVSSLVYEASARIRDPVYGCAGAICQLQK 125
           AV+S+VYEA ARIRDPVYGCAGAI  LQ+
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQR 117

[Close]

BLAST of CsaV3_1G013050 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-37
Identity = 69/89 (77.53%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 38  VTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAV 97
           ++PCAACKILRRRC  KCVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV
Sbjct: 53  LSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 112

Query: 98  SSLVYEASARIRDPVYGCAGAICQLQKQI 127
           +S+VYEA AR+RDPVYGCAGAI  LQ+Q+
Sbjct: 113 NSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

[Close]

BLAST of CsaV3_1G013050 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-32
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCA+CK+LRRRC + C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 99  SLVYEASARIRDPVYGCAGAICQLQKQIN 128
           SLV+EA+AR+RDPVYGC GAI  LQ Q++
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVS 95

[Close]

BLAST of CsaV3_1G013050 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACK+LRRRC Q CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 99  SLVYEASARIRDPVYGCAGAICQLQKQIN 128
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQID 100

[Close]

BLAST of CsaV3_1G013050 vs. TAIR10
Match: AT2G40470.1 (LOB domain-containing protein 15)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 56/89 (62.92%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 38  VTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAV 97
           +TPCAACK+LRRRC Q+C  +PYF P +P KF   H++FGASN+ K+L+++P+SQRADA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 98  SSLVYEASARIRDPVYGCAGAICQLQKQI 127
           +SLVYEA+ R+RDPVYGC GAI  LQ+Q+
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQV 131

[Close]

BLAST of CsaV3_1G013050 vs. Swiss-Prot
Match: sp|Q9LQR0|LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-36
Identity = 70/89 (78.65%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 36  VVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRAD 95
           VV++PCAACKILRRRC ++CVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR D
Sbjct: 29  VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query: 96  AVSSLVYEASARIRDPVYGCAGAICQLQK 125
           AV+S+VYEA ARIRDPVYGCAGAI  LQ+
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQR 117

[Close]

BLAST of CsaV3_1G013050 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-36
Identity = 69/89 (77.53%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 38  VTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAV 97
           ++PCAACKILRRRC  KCVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV
Sbjct: 53  LSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 112

Query: 98  SSLVYEASARIRDPVYGCAGAICQLQKQI 127
           +S+VYEA AR+RDPVYGCAGAI  LQ+Q+
Sbjct: 113 NSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

[Close]

BLAST of CsaV3_1G013050 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 6.4e-31
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCA+CK+LRRRC + C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 99  SLVYEASARIRDPVYGCAGAICQLQKQIN 128
           SLV+EA+AR+RDPVYGC GAI  LQ Q++
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVS 95

[Close]

BLAST of CsaV3_1G013050 vs. Swiss-Prot
Match: sp|Q8L5T5|LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 4.2e-30
Identity = 56/89 (62.92%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 38  VTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAV 97
           +TPCAACK+LRRRC Q+C  +PYF P +P KF   H++FGASN+ K+L+++P+SQRADA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 98  SSLVYEASARIRDPVYGCAGAICQLQKQI 127
           +SLVYEA+ R+RDPVYGC GAI  LQ+Q+
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQV 131

[Close]

BLAST of CsaV3_1G013050 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.2e-30
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACK+LRRRC Q CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 99  SLVYEASARIRDPVYGCAGAICQLQKQIN 128
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQID 100

[Close]

BLAST of CsaV3_1G013050 vs. TrEMBL
Match: tr|A0A1S3CK12|A0A1S3CK12_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.6e-79
Identity = 167/176 (94.89%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 33  QAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 92
           QA VVV+PCAACKILRRRC +KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ
Sbjct: 30  QAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 89

Query: 93  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVA 152
           RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVA
Sbjct: 90  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVA 149

Query: 153 LICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           LICKELAQTPPPMSS SLLP+HRSLDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 150 LICKELAQTPPPMSSLSLLPDHRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of CsaV3_1G013050 vs. TrEMBL
Match: tr|A0A0A0LS55|A0A0A0LS55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 6.0e-74
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 52  TQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 111
           T KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP
Sbjct: 9   TMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 68

Query: 112 VYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLL 171
           VYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLL
Sbjct: 69  VYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLL 128

Query: 172 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 129 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of CsaV3_1G013050 vs. TrEMBL
Match: tr|A0A1Q3B2A5|A0A1Q3B2A5_CEPFO (DUF260 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05614 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 117/173 (67.63%), Postives = 134/173 (77.46%), Query Frame = 0


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACKILRRRC  KCVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVS
Sbjct: 45  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 104

Query: 99  SLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKEL 158
           S+VYEASARIRDPVYGCAGAICQLQKQ+N XXXXXXXXXXXXXXX   QTNLVAL+C E+
Sbjct: 105 SMVYEASARIRDPVYGCAGAICQLQKQVNEXXXXXXXXXXXXXXXXXQQTNLVALLCMEM 164

Query: 159 AQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSN---IWDPLWT 209
           AQ+P P+   S+           NI+  P SY        D+N   +W+PLWT
Sbjct: 165 AQSPQPIYQQSV----------DNIITNPPSYHSTPCFIDDNNMGSLWEPLWT 207

[Close]

BLAST of CsaV3_1G013050 vs. TrEMBL
Match: tr|A0A0A0LUS4|A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 101/171 (59.06%), Postives = 123/171 (71.93%), Query Frame = 0


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACKILRRRC + C L PYFP  +PLKFTIAHR+FGASNIIKLL DLP+SQR DAV+
Sbjct: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79

Query: 99  SLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKEL 158
           S+VYEASARIRDP+YGCAG+I  LQ+QIN                HC Q NL+ LI KEL
Sbjct: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139

Query: 159 AQTP-PPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
            Q P PPM       +H+SL++ +NI A+PQSY  Y+ LF + N+ +P+WT
Sbjct: 140 GQVPQPPMH------DHQSLNDPYNI-ASPQSYHSYSYLFEECNVLEPMWT 183

[Close]

BLAST of CsaV3_1G013050 vs. TrEMBL
Match: tr|A0A1S3CK31|A0A1S3CK31_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.3e-48
Identity = 101/169 (59.76%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 40  PCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSS 99
           PCAACKILRRRC + C L PYFPP +PLKFTIAHR+FGASNIIKLL +LP SQRADAV+S
Sbjct: 21  PCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGASNIIKLLQNLPKSQRADAVNS 80

Query: 100 LVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELA 159
           +VYEASARIRDP+YGCAG+I  LQ+QIN                HC Q NL+ LICKEL 
Sbjct: 81  MVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAEVLRMHCQQANLMTLICKELG 140

Query: 160 QTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           Q P P       P H    + +NI A+PQ Y  Y+ LF +SN+ +PLWT
Sbjct: 141 QMPEP-------PMH----DHYNI-ASPQGYYSYSYLFEESNVLEPLWT 177

The following BLAST results are available for this feature:

BLAST of CsaV3_1G013050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147299.1	4.9e-88	100.00	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
XP_008463550.1	2.5e-79	94.89	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
KGN64755.1	9.0e-74	99.36	hypothetical protein Csa_1G088450 [Cucumis sativus]	[more]
XP_022157927.1	1.5e-68	82.86	LOB domain-containing protein 11-like [Momordica charantia]	[more]
XP_022998902.1	3.6e-62	72.73	LOB domain-containing protein 1-like [Cucurbita maxima]	[more]

BLAST of CsaV3_1G013050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07900.1	1.3e-37	78.65	LOB domain-containing protein 1	[more]
AT2G28500.1	2.2e-37	77.53	LOB domain-containing protein 11	[more]
AT2G30130.1	3.6e-32	65.17	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	2.3e-31	66.29	LOB domain-containing protein 4	[more]
AT2G40470.1	2.3e-31	62.92	LOB domain-containing protein 15	[more]

BLAST of CsaV3_1G013050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQR0\|LBD1_ARATH	2.3e-36	78.65	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
sp\|Q9SK08\|LBD11_ARATH	3.9e-36	77.53	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
sp\|Q8LBW3\|LBD12_ARATH	6.4e-31	65.17	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q8L5T5\|LBD15_ARATH	4.2e-30	62.92	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
sp\|Q9SHE9\|LBD4_ARATH	4.2e-30	66.29	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]

BLAST of CsaV3_1G013050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CK12\|A0A1S3CK12_CUCME	1.6e-79	94.89	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=...	[more]
tr\|A0A0A0LS55\|A0A0A0LS55_CUCSA	6.0e-74	99.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1	[more]
tr\|A0A1Q3B2A5\|A0A1Q3B2A5_CEPFO	1.0e-49	67.63	DUF260 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_0...	[more]
tr\|A0A0A0LUS4\|A0A0A0LUS4_CUCSA	3.0e-49	59.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1	[more]
tr\|A0A1S3CK31\|A0A1S3CK31_CUCME	3.3e-48	59.76	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G013050.1	CsaV3_1G013050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 119..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR31301:SF6	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 13..208
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 13..208
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 40..137 e-value: 1.3E-40 score: 137.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 39..140 score: 26.294

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G013050	Cucumber (Chinese Long) v3	cuccucB055
CsaV3_1G013050	Silver-seed gourd	carcucB0474
CsaV3_1G013050	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G013050	Cucumber (Gy14) v2	cgybcucB256
CsaV3_1G013050	Cucumber (Gy14) v1	cgycucB332
CsaV3_1G013050	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G013050	Cucurbita maxima (Rimu)	cmacucB0518
CsaV3_1G013050	Cucurbita maxima (Rimu)	cmacucB0649
CsaV3_1G013050	Cucurbita maxima (Rimu)	cmacucB0693
CsaV3_1G013050	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G013050	Cucurbita moschata (Rifu)	cmocucB0505
CsaV3_1G013050	Cucurbita moschata (Rifu)	cmocucB0634
CsaV3_1G013050	Cucurbita moschata (Rifu)	cmocucB0678
CsaV3_1G013050	Cucurbita pepo (Zucchini)	cpecucB0332
CsaV3_1G013050	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G013050	Cucurbita pepo (Zucchini)	cpecucB0657
CsaV3_1G013050	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G013050	Wild cucumber (PI 183967)	cpicucB320
CsaV3_1G013050	Bottle gourd (USVL1VR-Ls)	cuclsiB002
CsaV3_1G013050	Bottle gourd (USVL1VR-Ls)	cuclsiB025
CsaV3_1G013050	Melon (DHL92) v3.5.1	cucmeB009
CsaV3_1G013050	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G013050	Melon (DHL92) v3.6.1	cucmedB008
CsaV3_1G013050	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G013050	Watermelon (Charleston Gray)	cucwcgB035
CsaV3_1G013050	Watermelon (Charleston Gray)	cucwcgB040
CsaV3_1G013050	Watermelon (97103) v1	cucwmB015
CsaV3_1G013050	Watermelon (97103) v1	cucwmB080
CsaV3_1G013050	Watermelon (97103) v2	cucwmbB028
CsaV3_1G013050	Watermelon (97103) v2	cucwmbB032
CsaV3_1G013050	Wax gourd	cucwgoB022
CsaV3_1G013050	Wax gourd	cucwgoB051