CsaV3_1G012720 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G012720
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 7982233 .. 7982406 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAAAACTCGTCGACCCAACCCGACTTCTTTTAGTTATTTTGGGTTGGGTTCGACCTTTGCTTATTGAACCAATAGGTTCCTCCTCAGTCGTCTTTCTTCTCCATCTCTACTCTAAGGCAACTCGGCGCCGGCCGTCATCGCTCAATTGCTCAGTGCAATTGTTTTGA

mRNA sequence

ATGAAAAAAAAACTCGTCGACCCAACCCGACTTCTTTTAGTTATTTTGGGTTGGGTTCGACCTTTGCTTATTGAACCAATAGGTTCCTCCTCAGTCGTCTTTCTTCTCCATCTCTACTCTAAGGCAACTCGGCGCCGGCCGTCATCGCTCAATTGCTCAGTGCAATTGTTTTGA

Coding sequence (CDS)

ATGAAAAAAAAACTCGTCGACCCAACCCGACTTCTTTTAGTTATTTTGGGTTGGGTTCGACCTTTGCTTATTGAACCAATAGGTTCCTCCTCAGTCGTCTTTCTTCTCCATCTCTACTCTAAGGCAACTCGGCGCCGGCCGTCATCGCTCAATTGCTCAGTGCAATTGTTTTGA

Protein sequence

MKKKLVDPTRLLLVILGWVRPLLIEPIGSSSVVFLLHLYSKATRRRPSSLNCSVQLF
Homology
[Close]
BLAST of CsaV3_1G012720 vs. NCBI nr
Match: KGN64718.1 (hypothetical protein Csa_1G077200 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MKKKLVDPTRLLLVILGWVRPLLIEPIGSSSVVFLLHLYSKATRRRPSSLNCSVQLF 58
          MKKKLVDPTRLLLVILGWVRPLLIEPIGSSSVVFLLHLYSKATRRRPSSLNCSVQLF
Sbjct: 1  MKKKLVDPTRLLLVILGWVRPLLIEPIGSSSVVFLLHLYSKATRRRPSSLNCSVQLF 57

[Close]
BLAST of CsaV3_1G012720 vs. TrEMBL
Match: tr|A0A0A0LSG0|A0A0A0LSG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077200 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MKKKLVDPTRLLLVILGWVRPLLIEPIGSSSVVFLLHLYSKATRRRPSSLNCSVQLF 58
          MKKKLVDPTRLLLVILGWVRPLLIEPIGSSSVVFLLHLYSKATRRRPSSLNCSVQLF
Sbjct: 1  MKKKLVDPTRLLLVILGWVRPLLIEPIGSSSVVFLLHLYSKATRRRPSSLNCSVQLF 57

The following BLAST results are available for this feature:
BLAST of CsaV3_1G012720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64718.11.7e-22100.00hypothetical protein Csa_1G077200 [Cucumis sativus][more]
BLAST of CsaV3_1G012720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSG0|A0A0A0LSG0_CUCSA1.1e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077200 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G012720.1CsaV3_1G012720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G012720Wax gourdcucwgoB045
CsaV3_1G012720Cucumber (Gy14) v2cgybcucB002
CsaV3_1G012720Cucumber (Gy14) v1cgycucB174
CsaV3_1G012720Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G012720Wild cucumber (PI 183967)cpicucB001
CsaV3_1G012720Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G012720Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G012720Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G012720Watermelon (97103) v1cucwmB015
CsaV3_1G012720Watermelon (97103) v2cucwmbB032