CsaV3_1G012690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G012690
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 7946346 .. 7946988 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGAATATCCAATCAAATATAAAAATAACCATTTACAATCAAGAGATCAGATTGGTACAAATAGAACATACTTCAACTGGATTATTATAGCTAGATTTTCGACCTAATAGTCGCACACTCAGGAAATACACACCAGAAAAGATTTTTTAAAAAATATGAAGAATTTATTACAAATGTCTATAGCCTCTTGAAAAAAATGAGCAAGAACACACAGCAGAAATCCCATATCTCTCCCACCAATTAAAAGGAGACTCCATGAAAAATAAGAGGTGGCGGTGGTGCGGGATAAGGCGGAGGAGCATCGACGGTTCTAGCGCTGGTGACGAGGTCTCGGATGGGTCTGCAGAGTATTTCTTCAGCCATGAAAGTCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAGAATTTGAGCTTTGATACGACCGCGCTTTGGTGGAAGGGTAAAGATCTTCCCCTTTGAAGCTGTTGAAGATGCTGCTGCCATGGCGGAAGAAGAAGAAGAAAAAAGAGAAGAGCTCGAGAGAAGAAGAAGAAGAAGAAGAGAAGGAGGGAAGAATTGAAGGACCCCAAAGATGCATGTGGGGACTTATAGGGCCAACGAGAAATTTTGGGGGTTCTTTTTGGCAAATATTGAATAGTGACA

mRNA sequence

ATGAAAAATAAGAGGTGGCGGTGGTGCGGGATAAGGCGGAGGAGCATCGACGGTTCTAGCGCTGGTGACGAGGTCTCGGATGGGTCTGCAGAGTATTTCTTCAGCCATGAAAGTCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAGAATTTGAGCTTTGATACGACCGCGCTTTGGTGGAAGGGTAAAGATCTTCCCCTTTGA

Coding sequence (CDS)

ATGAAAAATAAGAGGTGGCGGTGGTGCGGGATAAGGCGGAGGAGCATCGACGGTTCTAGCGCTGGTGACGAGGTCTCGGATGGGTCTGCAGAGTATTTCTTCAGCCATGAAAGTCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAGAATTTGAGCTTTGATACGACCGCGCTTTGGTGGAAGGGTAAAGATCTTCCCCTTTGA

Protein sequence

MKNKRWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALWWKGKDLPL
Homology
[Close]
BLAST of CsaV3_1G012690 vs. NCBI nr
Match: KGN65653.1 (hypothetical protein Csa_1G479100 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-26
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1   MKNK-RWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALW 60
           MKNK RWR CG RRR+IDGSS GDEVSD SAEYFFSHESRQSCGINKALKNLSFDTTA W
Sbjct: 43  MKNKRRWRSCGSRRRNIDGSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFW 102

Query: 61  WKGKDLPL 68
           WKG+DLPL
Sbjct: 103 WKGRDLPL 110

[Close]
BLAST of CsaV3_1G012690 vs. TrEMBL
Match: tr|A0A0A0LV64|A0A0A0LV64_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479100 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1   MKNK-RWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALW 60
           MKNK RWR CG RRR+IDGSS GDEVSD SAEYFFSHESRQSCGINKALKNLSFDTTA W
Sbjct: 43  MKNKRRWRSCGSRRRNIDGSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFW 102

Query: 61  WKGKDLPL 68
           WKG+DLPL
Sbjct: 103 WKGRDLPL 110

The following BLAST results are available for this feature:
BLAST of CsaV3_1G012690 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65653.13.9e-2688.24hypothetical protein Csa_1G479100 [Cucumis sativus][more]
BLAST of CsaV3_1G012690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012690 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LV64|A0A0A0LV64_CUCSA2.6e-2688.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479100 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G012690.1CsaV3_1G012690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G012690Cucumber (Gy14) v2cgybcucB002
CsaV3_1G012690Cucumber (Gy14) v1cgycucB174
CsaV3_1G012690Wild cucumber (PI 183967)cpicucB001