CsaV3_1G011750 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G011750
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 7272485 .. 7272705 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCAT

mRNA sequence

ATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCAT

Coding sequence (CDS)

ATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCAT

Protein sequence

MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRGKEIHRAEDSLHKVX
BLAST of CsaV3_1G011750 vs. NCBI nr
Match: KGN64623.1 (hypothetical protein Csa_1G071860 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 4.4e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 60
          MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG
Sbjct: 9  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 68

Query: 61 KEIHRAEDSLHKV 74
          KEIHRAEDSLHKV
Sbjct: 69 KEIHRAEDSLHKV 81

BLAST of CsaV3_1G011750 vs. TrEMBL
Match: tr|A0A0A0LS84|A0A0A0LS84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 60
          MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG
Sbjct: 9  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 68

Query: 61 KEIHRAEDSLHKV 74
          KEIHRAEDSLHKV
Sbjct: 69 KEIHRAEDSLHKV 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64623.14.4e-31100.00hypothetical protein Csa_1G071860 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LS84|A0A0A0LS84_CUCSA2.9e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G011750.1CsaV3_1G011750.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..74

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G011750Cucumber (Chinese Long) v3cuccucB020
CsaV3_1G011750Cucumber (Chinese Long) v3cuccucB022
CsaV3_1G011750Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G011750Cucumber (Chinese Long) v3cuccucB057
CsaV3_1G011750Silver-seed gourdcarcucB0170
CsaV3_1G011750Silver-seed gourdcarcucB0672
CsaV3_1G011750Silver-seed gourdcarcucB0912
CsaV3_1G011750Silver-seed gourdcarcucB0939
CsaV3_1G011750Silver-seed gourdcarcucB0969
CsaV3_1G011750Silver-seed gourdcarcucB0991
CsaV3_1G011750Cucumber (Gy14) v2cgybcucB002
CsaV3_1G011750Cucumber (Gy14) v2cgybcucB104
CsaV3_1G011750Cucumber (Gy14) v2cgybcucB247
CsaV3_1G011750Cucumber (Gy14) v2cgybcucB311
CsaV3_1G011750Cucumber (Gy14) v1cgycucB018
CsaV3_1G011750Cucumber (Gy14) v1cgycucB073
CsaV3_1G011750Cucumber (Gy14) v1cgycucB174
CsaV3_1G011750Cucumber (Gy14) v1cgycucB222
CsaV3_1G011750Cucumber (Gy14) v1cgycucB519
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB0011
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB0371
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB0465
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB0515
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB0602
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G011750Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0000
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0368
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0503
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0588
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G011750Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G011750Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G011750Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G011750Cucurbita pepo (Zucchini)cpecucB0244
CsaV3_1G011750Cucurbita pepo (Zucchini)cpecucB0287
CsaV3_1G011750Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G011750Cucurbita pepo (Zucchini)cpecucB0668
CsaV3_1G011750Cucurbita pepo (Zucchini)cpecucB0953
CsaV3_1G011750Wild cucumber (PI 183967)cpicucB001
CsaV3_1G011750Wild cucumber (PI 183967)cpicucB129
CsaV3_1G011750Wild cucumber (PI 183967)cpicucB310
CsaV3_1G011750Wild cucumber (PI 183967)cpicucB380
CsaV3_1G011750Bottle gourd (USVL1VR-Ls)cuclsiB065
CsaV3_1G011750Bottle gourd (USVL1VR-Ls)cuclsiB009
CsaV3_1G011750Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G011750Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G011750Bottle gourd (USVL1VR-Ls)cuclsiB056
CsaV3_1G011750Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G011750Melon (DHL92) v3.5.1cucmeB039
CsaV3_1G011750Melon (DHL92) v3.5.1cucmeB083
CsaV3_1G011750Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G011750Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G011750Melon (DHL92) v3.6.1cucmedB033
CsaV3_1G011750Melon (DHL92) v3.6.1cucmedB036
CsaV3_1G011750Melon (DHL92) v3.6.1cucmedB078
CsaV3_1G011750Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G011750Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G011750Watermelon (Charleston Gray)cucwcgB036
CsaV3_1G011750Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G011750Watermelon (97103) v1cucwmB013
CsaV3_1G011750Watermelon (97103) v1cucwmB050
CsaV3_1G011750Watermelon (97103) v1cucwmB076
CsaV3_1G011750Watermelon (97103) v2cucwmbB001
CsaV3_1G011750Watermelon (97103) v2cucwmbB015
CsaV3_1G011750Watermelon (97103) v2cucwmbB030
CsaV3_1G011750Wax gourdcucwgoB038
CsaV3_1G011750Wax gourdcucwgoB026