CsaV3_1G011050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G011050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6850867 .. 6851139 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTGATGGATACGATTGCGCGCCACCGTGTGGTTGCCGGTGGCGCCATCGTGTTTAGAGGGTGTAAGGTGGTAATTAGGAATGGAAATGGGGAGGGGAGATTGACTAGGGATTTGGCGCAAATGAAGTTTATGAAATTTGTGTTTGAAATCACAAAGAATAACCTTCGTGCTACAGTGGTAGGATCTGAGGTAGATGATGACGATGATCTAAGCGTTAGATTTCAGATGGACGGGAGCGCCGTTAGATTGGAACCCCATCATTTTTAA

mRNA sequence

ATGAGGGTGATGGATACGATTGCGCGCCACCGTGTGGTTGCCGGTGGCGCCATCGTGTTTAGAGGGTGTAAGGTGGTAATTAGGAATGGAAATGGGGAGGGGAGATTGACTAGGGATTTGGCGCAAATGAAGTTTATGAAATTTGTGTTTGAAATCACAAAGAATAACCTTCGTGCTACAGTGGTAGGATCTGAGGTAGATGATGACGATGATCTAAGCGTTAGATTTCAGATGGACGGGAGCGCCGTTAGATTGGAACCCCATCATTTTTAA

Coding sequence (CDS)

ATGAGGGTGATGGATACGATTGCGCGCCACCGTGTGGTTGCCGGTGGCGCCATCGTGTTTAGAGGGTGTAAGGTGGTAATTAGGAATGGAAATGGGGAGGGGAGATTGACTAGGGATTTGGCGCAAATGAAGTTTATGAAATTTGTGTTTGAAATCACAAAGAATAACCTTCGTGCTACAGTGGTAGGATCTGAGGTAGATGATGACGATGATCTAAGCGTTAGATTTCAGATGGACGGGAGCGCCGTTAGATTGGAACCCCATCATTTTTAA

Protein sequence

MRVMDTIARHRVVAGGAIVFRGCKVVIRNGNGEGRLTRDLAQMKFMKFVFEITKNNLRATVVGSEVDDDDDLSVRFQMDGSAVRLEPHHF
Homology
[Close]
BLAST of CsaV3_1G011050 vs. NCBI nr
Match: KGN64550.1 (hypothetical protein Csa_1G064720 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 61/90 (67.78%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MRVMDTIARHRVVAGGAIVFRGCKVVIRNGNGEGRLTRDLAQMKFMKFVFEITKNNLRAT 60
          MRVMDTIARHRVVAGGAIVFRGCKV                             NNLRAT
Sbjct: 1  MRVMDTIARHRVVAGGAIVFRGCKV-----------------------------NNLRAT 60

Query: 61 VVGSEVDDDDDLSVRFQMDGSAVRLEPHHF 91
          VVGSEVDDDDDLSVRFQMDGSAVRLEPHHF
Sbjct: 61 VVGSEVDDDDDLSVRFQMDGSAVRLEPHHF 61

[Close]
BLAST of CsaV3_1G011050 vs. TrEMBL
Match: tr|A0A0A0LRM9|A0A0A0LRM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064720 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21
Identity = 61/90 (67.78%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MRVMDTIARHRVVAGGAIVFRGCKVVIRNGNGEGRLTRDLAQMKFMKFVFEITKNNLRAT 60
          MRVMDTIARHRVVAGGAIVFRGCKV                             NNLRAT
Sbjct: 1  MRVMDTIARHRVVAGGAIVFRGCKV-----------------------------NNLRAT 60

Query: 61 VVGSEVDDDDDLSVRFQMDGSAVRLEPHHF 91
          VVGSEVDDDDDLSVRFQMDGSAVRLEPHHF
Sbjct: 61 VVGSEVDDDDDLSVRFQMDGSAVRLEPHHF 61

The following BLAST results are available for this feature:
BLAST of CsaV3_1G011050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64550.13.0e-2167.78hypothetical protein Csa_1G064720 [Cucumis sativus][more]
BLAST of CsaV3_1G011050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G011050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G011050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRM9|A0A0A0LRM9_CUCSA2.0e-2167.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064720 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G011050.1CsaV3_1G011050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G011050CSPI01G10970Wild cucumber (PI 183967)cpicucB001
CsaV3_1G011050CsGy1G010870Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G011050Wax gourdcucwgoB026
CsaV3_1G011050Wax gourdcucwgoB053
CsaV3_1G011050Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G011050Cucumber (Chinese Long) v3cuccucB057
CsaV3_1G011050Silver-seed gourdcarcucB0672
CsaV3_1G011050Silver-seed gourdcarcucB0838
CsaV3_1G011050Silver-seed gourdcarcucB0912
CsaV3_1G011050Silver-seed gourdcarcucB0969
CsaV3_1G011050Silver-seed gourdcarcucB1049
CsaV3_1G011050Cucumber (Gy14) v2cgybcucB247
CsaV3_1G011050Cucumber (Gy14) v2cgybcucB311
CsaV3_1G011050Cucumber (Gy14) v1cgycucB018
CsaV3_1G011050Cucumber (Gy14) v1cgycucB089
CsaV3_1G011050Cucumber (Gy14) v1cgycucB222
CsaV3_1G011050Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G011050Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G011050Cucurbita maxima (Rimu)cmacucB0602
CsaV3_1G011050Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G011050Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G011050Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G011050Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G011050Cucurbita moschata (Rifu)cmocucB0588
CsaV3_1G011050Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G011050Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G011050Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G011050Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G011050Cucurbita pepo (Zucchini)cpecucB0287
CsaV3_1G011050Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G011050Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G011050Wild cucumber (PI 183967)cpicucB310
CsaV3_1G011050Wild cucumber (PI 183967)cpicucB380
CsaV3_1G011050Bottle gourd (USVL1VR-Ls)cuclsiB009
CsaV3_1G011050Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G011050Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G011050Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G011050Melon (DHL92) v3.5.1cucmeB039
CsaV3_1G011050Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G011050Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G011050Melon (DHL92) v3.6.1cucmedB036
CsaV3_1G011050Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G011050Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G011050Watermelon (Charleston Gray)cucwcgB036
CsaV3_1G011050Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G011050Watermelon (97103) v1cucwmB013
CsaV3_1G011050Watermelon (97103) v1cucwmB050
CsaV3_1G011050Watermelon (97103) v1cucwmB076
CsaV3_1G011050Watermelon (97103) v2cucwmbB001
CsaV3_1G011050Watermelon (97103) v2cucwmbB030