CsaV3_1G010920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6775807 .. 6776116 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCAATCGAGCAATGAGGAACCAAAGTCAAATTGCACCTTGGTTCACGGCATGAATACCATTGGTCTTAAACACCAGAAAGAAGACACTGATTCCTTTCAAGTAGAATCGAATTTTCTCAGAAGGAACAACGGAGATTGATGACCGGAGAGATAGTCGACGGACATTCAGGAGAGGTCATCGTTCATTGTTCGACTAGGAGACACCAGAAGAAGCTGACACAAAACGTTTTCTTCTTAAGCCTTTCGGAGTTCCGATTCTATATATTCATTTACCGTTTCCTCAAGCAAGCATTCGATTTTTGTGA

mRNA sequence

ATGATCCAATCGAGCAATGAGGAACCAAAGTCAAATTGCACCTTGGTTCACGGCATGAATACCATTGGTCTTAAACACCAGAAAGAAGACACTGATTCCTTTCAAGAGACACCAGAAGAAGCTGACACAAAACGTTTTCTTCTTAAGCCTTTCGGAGTTCCGATTCTATATATTCATTTACCGTTTCCTCAAGCAAGCATTCGATTTTTGTGA

Coding sequence (CDS)

ATGATCCAATCGAGCAATGAGGAACCAAAGTCAAATTGCACCTTGGTTCACGGCATGAATACCATTGGTCTTAAACACCAGAAAGAAGACACTGATTCCTTTCAAGAGACACCAGAAGAAGCTGACACAAAACGTTTTCTTCTTAAGCCTTTCGGAGTTCCGATTCTATATATTCATTTACCGTTTCCTCAAGCAAGCATTCGATTTTTGTGA

Protein sequence

MIQSSNEEPKSNCTLVHGMNTIGLKHQKEDTDSFQETPEEADTKRFLLKPFGVPILYIHLPFPQASIRFL
Homology
[Close]
BLAST of CsaV3_1G010920 vs. NCBI nr
Match: KGN64538.1 (hypothetical protein Csa_1G063620 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MIQSSNEEPKSNCTLVHGMNTIGLKHQKEDTDSFQETPEEADTKRFLLKPFGVPILYIHL 60
          MIQSSNEEPKSNCTLVHGMNTIGLKHQKEDTDSFQETPEEADTKRFLLKPFGVPILYIHL
Sbjct: 1  MIQSSNEEPKSNCTLVHGMNTIGLKHQKEDTDSFQETPEEADTKRFLLKPFGVPILYIHL 60

Query: 61 PFPQASIRFL 71
          PFPQASIRFL
Sbjct: 61 PFPQASIRFL 70

[Close]
BLAST of CsaV3_1G010920 vs. TrEMBL
Match: tr|A0A0A0LS23|A0A0A0LS23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063620 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.6e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MIQSSNEEPKSNCTLVHGMNTIGLKHQKEDTDSFQETPEEADTKRFLLKPFGVPILYIHL 60
          MIQSSNEEPKSNCTLVHGMNTIGLKHQKEDTDSFQETPEEADTKRFLLKPFGVPILYIHL
Sbjct: 1  MIQSSNEEPKSNCTLVHGMNTIGLKHQKEDTDSFQETPEEADTKRFLLKPFGVPILYIHL 60

Query: 61 PFPQASIRFL 71
          PFPQASIRFL
Sbjct: 61 PFPQASIRFL 70

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64538.11.3e-32100.00hypothetical protein Csa_1G063620 [Cucumis sativus][more]
BLAST of CsaV3_1G010920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LS23|A0A0A0LS23_CUCSA8.6e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010920.1CsaV3_1G010920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010920CsGy1G010740Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010920Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010920Silver-seed gourdcarcucB0529
CsaV3_1G010920Silver-seed gourdcarcucB0672
CsaV3_1G010920Silver-seed gourdcarcucB0969
CsaV3_1G010920Silver-seed gourdcarcucB1049
CsaV3_1G010920Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010920Cucumber (Gy14) v1cgycucB018
CsaV3_1G010920Cucumber (Gy14) v1cgycucB089
CsaV3_1G010920Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010920Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010920Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010920Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010920Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010920Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010920Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010920Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010920Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010920Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010920Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010920Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010920Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010920Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010920Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010920Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010920Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010920Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010920Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010920Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010920Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010920Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010920Watermelon (97103) v1cucwmB013
CsaV3_1G010920Watermelon (97103) v1cucwmB050
CsaV3_1G010920Watermelon (97103) v2cucwmbB001
CsaV3_1G010920Watermelon (97103) v2cucwmbB030
CsaV3_1G010920Wax gourdcucwgoB037
CsaV3_1G010920Wax gourdcucwgoB026