CsaV3_1G010770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010770
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr1 : 6682265 .. 6682861 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

mRNA sequence

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

Coding sequence (CDS)

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

Protein sequence

MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHELGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLILKMVSLHWRFWED
Homology
[Close]
BLAST of CsaV3_1G010770 vs. NCBI nr
Match: KGN64520.1 (hypothetical protein Csa_1G062950 [Cucumis sativus])

HSP 1 Score: 404.8 bits (1039), Expect = 1.7e-109
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60
           MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE
Sbjct: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60

Query: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120
           LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP
Sbjct: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120

Query: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180
           SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI
Sbjct: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180

Query: 181 MESLILKMVSLHWRFWED 199
           MESLILKMVSLHWRFWED
Sbjct: 181 MESLILKMVSLHWRFWED 198

[Close]
BLAST of CsaV3_1G010770 vs. NCBI nr
Match: ADN34051.1 (pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo])

HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0 

Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_1G010770 vs. NCBI nr
Match: XP_008441068.2 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0 

Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_1G010770 vs. NCBI nr
Match: XP_022923680.1 (pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucurbita moschata])

HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           MIFS +FLR S VF RGFHTGKKL SPSTEDIICKAICVNLK RRWKFLEQ+SPSLTNSL
Sbjct: 1   MIFSFIFLRRSCVFSRGFHTGKKLFSPSTEDIICKAICVNLKHRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFR SPQLALEFYNWVEARDN SHSLES CTLVHVLVNSRNF+DALSIM+SL+L
Sbjct: 61  VCRVVREFRTSPQLALEFYNWVEARDNISHSLESCCTLVHVLVNSRNFDDALSIMKSLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_1G010770 vs. NCBI nr
Match: XP_023519211.1 (pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           MIFS +FLR S VF RGFHTGKKL SPSTEDIICKAICVNLK RRWKFLEQ+SPSLTNSL
Sbjct: 1   MIFSFIFLRRSCVFSRGFHTGKKLFSPSTEDIICKAICVNLKHRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFR SPQLALEFYNWVEARDN SHSLES CTLVHVLVNSRNF+DALSIM+SL+L
Sbjct: 61  VCRVVREFRTSPQLALEFYNWVEARDNISHSLESCCTLVHVLVNSRNFDDALSIMKSLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_1G010770 vs. TAIR10
Match: AT1G11710.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 0 

Query: 68  IFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLV 127
           +F  +F R +S   R FH  KK  +P  EDI+  A+C+NL+QRRW  L Q S SLTN L+
Sbjct: 1   MFGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLI 60

Query: 128 CRVIREFRNSPQLALEFYNWVEARDNFSHS---LESRCTLVHVLVNSRNFNDALSIMESL 186
            RV+REFR+SP+LALEFYNWV   +  + S    E+ C ++H+LV SR F+DALSIM +L
Sbjct: 61  SRVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANL 120

[Close]
BLAST of CsaV3_1G010770 vs. TAIR10
Match: AT4G26680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-08
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 106 NLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLV 165
           +L Q  W  L +LS  L +  V  V+ + +    L+LEF+NW + R+  SHSLE+   ++
Sbjct: 63  HLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVL 122

Query: 166 HVLVNSRNFNDALSIMESLIL 187
           H L  +R F  A SI+  +++
Sbjct: 123 HTLTKNRKFKSAESILRDVLV 143

[Close]
BLAST of CsaV3_1G010770 vs. TAIR10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-08
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           V RV+ E +  P+LA +F+ W   R+ F HS+ES C + H+L  +R + DA S+++ ++L
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

[Close]
BLAST of CsaV3_1G010770 vs. TAIR10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04
Identity = 37/126 (29.37%), Postives = 58/126 (46.03%), Query Frame = 0 

Query: 66  SMIF--SLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWK---FLEQLSP 125
           SM+F    L  R + +  R F    + LS ++ +     I   LKQ  W+       LS 
Sbjct: 4   SMLFRKRTLVTRANFLLFRSFSVNVEKLSDASAE-----IAGILKQENWRDTLVSSNLSI 63

Query: 126 SLTNSLVCRVIREFR-NSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALS 185
            +   +V  V+R  R + P   L F+NWV+++      L+S   L   L N  +F  ALS
Sbjct: 64  EINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALS 123

[Close]
BLAST of CsaV3_1G010770 vs. TAIR10
Match: AT5G59900.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.8e-04
Identity = 19/52 (36.54%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 136 NSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLILK 188
           + P+L L F+N++     F HS  S C L+H LV +  F  A S++++L+L+
Sbjct: 82  DDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLR 133

[Close]
BLAST of CsaV3_1G010770 vs. Swiss-Prot
Match: sp|Q9SAA6|PPR34_ARATH (Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g11710 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.9e-28
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 0 

Query: 68  IFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLV 127
           +F  +F R +S   R FH  KK  +P  EDI+  A+C+NL+QRRW  L Q S SLTN L+
Sbjct: 1   MFGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLI 60

Query: 128 CRVIREFRNSPQLALEFYNWVEARDNFSHS---LESRCTLVHVLVNSRNFNDALSIMESL 186
            RV+REFR+SP+LALEFYNWV   +  + S    E+ C ++H+LV SR F+DALSIM +L
Sbjct: 61  SRVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANL 120

[Close]
BLAST of CsaV3_1G010770 vs. Swiss-Prot
Match: sp|Q9SZ10|PP338_ARATH (Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g26680 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.2e-07
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 106 NLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLV 165
           +L Q  W  L +LS  L +  V  V+ + +    L+LEF+NW + R+  SHSLE+   ++
Sbjct: 63  HLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVL 122

Query: 166 HVLVNSRNFNDALSIMESLIL 187
           H L  +R F  A SI+  +++
Sbjct: 123 HTLTKNRKFKSAESILRDVLV 143

[Close]
BLAST of CsaV3_1G010770 vs. Swiss-Prot
Match: sp|P0C894|PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.1e-07
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           V RV+ E +  P+LA +F+ W   R+ F HS+ES C + H+L  +R + DA S+++ ++L
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

[Close]
BLAST of CsaV3_1G010770 vs. TrEMBL
Match: tr|A0A0A0LRK7|A0A0A0LRK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062950 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.1e-109
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60
           MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE
Sbjct: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60

Query: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120
           LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP
Sbjct: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120

Query: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180
           SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI
Sbjct: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180

Query: 181 MESLILKMVSLHWRFWED 199
           MESLILKMVSLHWRFWED
Sbjct: 181 MESLILKMVSLHWRFWED 198

[Close]
BLAST of CsaV3_1G010770 vs. TrEMBL
Match: tr|A0A1S3B385|A0A1S3B385_CUCME (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485289 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.1e-56
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0 

Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_1G010770 vs. TrEMBL
Match: tr|E5GC52|E5GC52_CUCME (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.1e-56
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0 

Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_1G010770 vs. TrEMBL
Match: tr|A0A2I4EDW7|A0A2I4EDW7_9ROSI (pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Juglans regia OX=51240 GN=LOC108988717 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.3e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 0 

Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M  S    +GS+  RRGFH GK+  +PSTEDI+  AICVNLKQRRW+ LEQ+  SL NSL
Sbjct: 1   MFLSFCLTKGSAFIRRGFHVGKQFSNPSTEDIVFSAICVNLKQRRWRILEQMWRSLDNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLI 186
           VCRVI EF+NSP LALEFYNWV  +  FSHSLES CT++H+LVNSR F+DAL++M +LI
Sbjct: 61  VCRVILEFQNSPLLALEFYNWVGEKKKFSHSLESSCTVIHLLVNSRRFDDALALMGNLI 119

[Close]
BLAST of CsaV3_1G010770 vs. TrEMBL
Match: tr|A0A2H5N4P0|A0A2H5N4P0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_014810 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.2e-35
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 0 

Query: 59  HELGFWHSMI--FSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLE 118
           +ELGF HSM   F     + +S   R FH GK+  +PSTEDI+ +AICVNL+QR+WK LE
Sbjct: 13  YELGFEHSMFSAFCNCLYKSNSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILE 72

Query: 119 QLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFND 178
           Q++PSLTNSLV RV+ EFR SP+LALEFY WV   + FSHSLES C +VH+LVN R F+D
Sbjct: 73  QMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDD 132

Query: 179 ALSIMESLI 186
           AL +M +L+
Sbjct: 133 ALLLMGNLM 141

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64520.11.7e-109100.00hypothetical protein Csa_1G062950 [Cucumis sativus][more]
ADN34051.11.4e-5591.74pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo][more]
XP_008441068.21.4e-5591.74PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g... [more]
XP_022923680.12.9e-5387.60pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucurbita ... [more]
XP_023519211.12.9e-5387.60pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucurbita ... [more]
BLAST of CsaV3_1G010770 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11710.12.7e-2951.24Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G26680.13.4e-0834.57Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G02150.14.5e-0838.33Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G61990.11.0e-0429.37Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G59900.11.8e-0436.54Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CsaV3_1G010770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SAA6|PPR34_ARATH4.9e-2851.24Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidop... [more]
sp|Q9SZ10|PP338_ARATH6.2e-0734.57Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidop... [more]
sp|P0C894|PP143_ARATH8.1e-0738.33Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th... [more]
BLAST of CsaV3_1G010770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRK7|A0A0A0LRK7_CUCSA1.1e-109100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062950 PE=4 SV=1[more]
tr|A0A1S3B385|A0A1S3B385_CUCME9.1e-5691.74LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mito... [more]
tr|E5GC52|E5GC52_CUCME9.1e-5691.74Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=41267... [more]
tr|A0A2I4EDW7|A0A2I4EDW7_9ROSI7.3e-3764.71pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Juglans ... [more]
tr|A0A2H5N4P0|A0A2H5N4P0_CITUN5.2e-3558.91Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_014810 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010770.1CsaV3_1G010770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015:SF1586SUBFAMILY NOT NAMEDcoord: 71..185
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 71..185

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010770Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010770Silver-seed gourdcarcucB0529
CsaV3_1G010770Silver-seed gourdcarcucB0672
CsaV3_1G010770Silver-seed gourdcarcucB0969
CsaV3_1G010770Silver-seed gourdcarcucB1049
CsaV3_1G010770Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010770Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010770Cucumber (Gy14) v1cgycucB018
CsaV3_1G010770Cucumber (Gy14) v1cgycucB089
CsaV3_1G010770Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010770Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010770Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010770Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010770Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010770Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010770Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010770Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010770Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010770Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010770Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010770Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010770Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010770Wild cucumber (PI 183967)cpicucB009
CsaV3_1G010770Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010770Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010770Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010770Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010770Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010770Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010770Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010770Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010770Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010770Watermelon (97103) v1cucwmB013
CsaV3_1G010770Watermelon (97103) v1cucwmB050
CsaV3_1G010770Watermelon (97103) v2cucwmbB001
CsaV3_1G010770Watermelon (97103) v2cucwmbB030
CsaV3_1G010770Watermelon (97103) v2cucwmbB040
CsaV3_1G010770Wax gourdcucwgoB037
CsaV3_1G010770Wax gourdcucwgoB026