CsaV3_1G010640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010640
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6614156 .. 6615586 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAGACCAATAATATTAATATAGTAATTTAGTACTGTGTGTAAGACAAATTAAGGACAGTACAGGGAAACAGAAAGATGCTTATAGGCTGCAGTTCCTCTTCTTTATAAGCTCACAAACAACCAGCGAAACCCATGCAAAAACCCCTCTTCTAATTATTATTATTAATGATGCCTCAATCTTCTTTCAAATTTCTTTGTTTTATACTTCTTGTTTTAACCCAACTTAGTTTTGGCTATGGCTGGGGATTTGACAATGAAGATTCTTGCCGGTATTGGAGGGGATGTGGAACCTTCTTTGGATGGCCAGCTGACAAGCCCGGTTCTGGAGGTGGTGGTGGTGGAGGGAGCGGTAGTGGCGGAGGCAATTCCGGAGATGGGGTTGGGTTTGGCCATGGTGAAGGTTATGGAGCTGGGTTTGGTGTAGGTGGTAATGGTGGAGGTGGAGGCGGCGGCGGCGGTGGGGGAGGTGGGTCTGGAGAAGGATATGGTCATGGTAGTGGATATGGAGCTGGAGGCGGCGGGGTGACTGGTGGAGGCGCAGCAGGAGGAGGTGGTGGCGGTGGTGGTAGTGGTAGTGGTAGTGGTAACGGTGGAAATGGTTTTGGCCAAGGAATGGGATTCGGTGCAGGGTTTGGATTAGGCGGAGGAGGCGGTGGTGGAGGAGGTGGCGGTGGCGGCGGTGGGGGTGGCAATTCTGTTTGGGGAGGGGAGGCGTATGGACATGGAAGTGGATTTGGGGGAGGTGGAGGAGCTGGAGCTGGAGGAGGAGGTGGCGGCGGCGGTAGTGGAGGAGGAGGAACAAATGGAGGAAATGGCTATGGCAGTGGTTTTGGAGGTGGCATAGGTAGCGGAAGCAGCGGTGGTGGCGGGGGTGGAGGAGGAGGGAGATCGAGTACAAACGGAGGAAGTAGTAAGGGTGATGGTAGTGGTTTTGGGGGCGGAGTAGGAAACGGTGCGGGTGGCGGTGGTGGGGGCAGTGGCGGAGGGGGTGGAATAAGTAGTTCAAATGGAGGATATGGTAAAGGGGAGGGCAGTGGATTCGGCGTCGGAGGAGGGAATACAAATAACTTTGGGGGCGGTGGTAAGGGAGGAGAAGGAATGGGGATGGGATTTGGAATGGGTTTTGGTATGGGAATTGGATTTGGGATGGGAAACAGTAATAGTAATAATAATGGAGCTGATGATTACAAAAATGATCAAACTAAAGCTAAAACCAATGGTTCTCAACCCTAAGCCACCTTTTGCCCATCACCATGCAATTAATTAATTAAGATACACAAAATTTGTTTGTAATCTTTAATATCTCATCATTTCCTATGTATTTATCACATATATATTATTGGTTTCCCTTTTTCAAATATTCAAGTTCAAGTTGATGATATATATTCCATGTATAATAAATACTTTTGTGATAAAATACTATTCTAG

mRNA sequence

ATGATGCCTCAATCTTCTTTCAAATTTCTTTGTTTTATACTTCTTGTTTTAACCCAACTTAGTTTTGGCTATGGCTGGGGATTTGACAATGAAGATTCTTGCCGGTATTGGAGGGGATGTGGAACCTTCTTTGGATGGCCAGCTGACAAGCCCGGTTCTGGAGGTGGTGGTGGTGGAGGGAGCGGTAGTGGCGGAGGCAATTCCGGAGATGGGGTTGGGTTTGGCCATGGTGAAGGTTATGGAGCTGGGTTTGGTGTAGGTGGTAATGGTGGAGGTGGAGGCGGCGGCGGCGGTGGGGGAGGTGGGTCTGGAGAAGGATATGGTCATGGTAGTGGATATGGAGCTGGAGGCGGCGGGGTGACTGGTGGAGGCGCAGCAGGAGGAGGTGGTGGCGGTGGTGGTAGTGGTAGTGGTAGTGGTAACGGTGGAAATGGTTTTGGCCAAGGAATGGGATTCGGTGCAGGGTTTGGATTAGGCGGAGGAGGCGGTGGTGGAGGAGGTGGCGGTGGCGGCGGTGGGGGTGGCAATTCTGTTTGGGGAGGGGAGGCGTATGGACATGGAAGTGGATTTGGGGGAGGTGGAGGAGCTGGAGCTGGAGGAGGAGGTGGCGGCGGCGGTAGTGGAGGAGGAGGAACAAATGGAGGAAATGGCTATGGCAGTGGTTTTGGAGGTGGCATAGGTAGCGGAAGCAGCGGTGGTGGCGGGGGTGGAGGAGGAGGGAGATCGAGTACAAACGGAGGAAGTAGTAAGGGTGATGGTAGTGGTTTTGGGGGCGGAGTAGGAAACGGTGCGGGTGGCGGTGGTGGGGGCAGTGGCGGAGGGGGTGGAATAAGTAGTTCAAATGGAGGATATGGTAAAGGGGAGGGCAGTGGATTCGGCGTCGGAGGAGGGAATACAAATAACTTTGGGGGCGGTGGTAAGGGAGGAGAAGGAATGGGGATGGGATTTGGAATGGGTTTTGGTATGGGAATTGGATTTGGGATGGGAAACAGTAATAGTAATAATAATGGAGCTGATGATTACAAAAATGATCAAACTAAAGCTAAAACCAATGGTTCTCAACCCTAA

Coding sequence (CDS)

ATGATGCCTCAATCTTCTTTCAAATTTCTTTGTTTTATACTTCTTGTTTTAACCCAACTTAGTTTTGGCTATGGCTGGGGATTTGACAATGAAGATTCTTGCCGGTATTGGAGGGGATGTGGAACCTTCTTTGGATGGCCAGCTGACAAGCCCGGTTCTGGAGGTGGTGGTGGTGGAGGGAGCGGTAGTGGCGGAGGCAATTCCGGAGATGGGGTTGGGTTTGGCCATGGTGAAGGTTATGGAGCTGGGTTTGGTGTAGGTGGTAATGGTGGAGGTGGAGGCGGCGGCGGCGGTGGGGGAGGTGGGTCTGGAGAAGGATATGGTCATGGTAGTGGATATGGAGCTGGAGGCGGCGGGGTGACTGGTGGAGGCGCAGCAGGAGGAGGTGGTGGCGGTGGTGGTAGTGGTAGTGGTAGTGGTAACGGTGGAAATGGTTTTGGCCAAGGAATGGGATTCGGTGCAGGGTTTGGATTAGGCGGAGGAGGCGGTGGTGGAGGAGGTGGCGGTGGCGGCGGTGGGGGTGGCAATTCTGTTTGGGGAGGGGAGGCGTATGGACATGGAAGTGGATTTGGGGGAGGTGGAGGAGCTGGAGCTGGAGGAGGAGGTGGCGGCGGCGGTAGTGGAGGAGGAGGAACAAATGGAGGAAATGGCTATGGCAGTGGTTTTGGAGGTGGCATAGGTAGCGGAAGCAGCGGTGGTGGCGGGGGTGGAGGAGGAGGGAGATCGAGTACAAACGGAGGAAGTAGTAAGGGTGATGGTAGTGGTTTTGGGGGCGGAGTAGGAAACGGTGCGGGTGGCGGTGGTGGGGGCAGTGGCGGAGGGGGTGGAATAAGTAGTTCAAATGGAGGATATGGTAAAGGGGAGGGCAGTGGATTCGGCGTCGGAGGAGGGAATACAAATAACTTTGGGGGCGGTGGTAAGGGAGGAGAAGGAATGGGGATGGGATTTGGAATGGGTTTTGGTATGGGAATTGGATTTGGGATGGGAAACAGTAATAGTAATAATAATGGAGCTGATGATTACAAAAATGATCAAACTAAAGCTAAAACCAATGGTTCTCAACCCTAA

Protein sequence

MMPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPGSGGGGGGGSGSGGGNSGDGVGFGHGEGYGAGFGVGGNGGGGGGGGGGGGGSGEGYGHGSGYGAGGGGVTGGGAAGGGGGGGGSGSGSGNGGNGFGQGMGFGAGFGLGGGGGGGGGGGGGGGGGNSVWGGEAYGHGSGFGGGGGAGAGGGGGGGGSGGGGTNGGNGYGSGFGGGIGSGSSGGGGGGGGGRSSTNGGSSKGDGSGFGGGVGNGAGGGGGGSGGGGGISSSNGGYGKGEGSGFGVGGGNTNNFGGGGKGGEGMGMGFGMGFGMGIGFGMGNSNSNNNGADDYKNDQTKAKTNGSQP
Homology
[Close]
BLAST of CsaV3_1G010640 vs. NCBI nr
Match: KGN64507.1 (hypothetical protein Csa_1G062330 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MMPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 53
          MMPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG
Sbjct: 1  MMPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 52

[Close]
BLAST of CsaV3_1G010640 vs. NCBI nr
Match: XP_011648420.1 (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 2  MPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 53
          MPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG
Sbjct: 1  MPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 51

[Close]
BLAST of CsaV3_1G010640 vs. NCBI nr
Match: ADN34063.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 2  MPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 53
          MP+SSF F CFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG
Sbjct: 1  MPRSSFNFFCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 51

[Close]
BLAST of CsaV3_1G010640 vs. NCBI nr
Match: XP_022923768.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-12
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 2  MPQSSFKFLCFILLVLTQLSFGY----GWGFDNEDSCRYWRGCGTFFGWPADK 51
          M    F+FLC ILLVL + SFGY    GWGF+NE+SCRYWRGCG+FFGWP DK
Sbjct: 1  MAHFCFRFLCLILLVLGRFSFGYGGDTGWGFNNEESCRYWRGCGSFFGWPVDK 53

[Close]
BLAST of CsaV3_1G010640 vs. NCBI nr
Match: XP_023520206.1 (glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 2  MPQSSFKFLCFILLVLTQLSFGY----GWGFDNEDSCRYWRGCGTFFGWPADK 51
          M    F+FLC +LLVL + SFGY    GWGF+NE+SCRYWRGCG+FFGWP  K
Sbjct: 1  MANFCFRFLCLVLLVLGRFSFGYGGDTGWGFNNEESCRYWRGCGSFFGWPVHK 53

[Close]
BLAST of CsaV3_1G010640 vs. TrEMBL
Match: tr|A0A0A0LUS3|A0A0A0LUS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062330 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.4e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MMPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 53
          MMPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG
Sbjct: 1  MMPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 52

[Close]
BLAST of CsaV3_1G010640 vs. TrEMBL
Match: tr|E5GC64|E5GC64_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.9e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 2  MPQSSFKFLCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 53
          MP+SSF F CFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG
Sbjct: 1  MPRSSFNFFCFILLVLTQLSFGYGWGFDNEDSCRYWRGCGTFFGWPADKPG 51

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010640 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64507.11.1e-23100.00hypothetical protein Csa_1G062330 [Cucumis sativus][more]
XP_011648420.13.3e-23100.00PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus][more]
ADN34063.11.0e-2194.12hypothetical protein [Cucumis melo subsp. melo][more]
XP_022923768.11.5e-1267.92glycine-rich cell wall structural protein 2-like [Cucurbita moschata][more]
XP_023520206.11.3e-1164.15glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_1G010640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUS3|A0A0A0LUS3_CUCSA7.4e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062330 PE=4 SV=1[more]
tr|E5GC64|E5GC64_CUCME6.9e-2294.12Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010640.1CsaV3_1G010640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..355

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010640CSPI01G10560Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010640Cucsa.085700Cucumber (Gy14) v1cgycucB089
CsaV3_1G010640CsGy1G010480Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010640Cla019369Watermelon (97103) v1cucwmB013
CsaV3_1G010640Lsi02G005880Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010640Cla97C03G055770Watermelon (97103) v2cucwmbB030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010640Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010640Silver-seed gourdcarcucB0529
CsaV3_1G010640Silver-seed gourdcarcucB0672
CsaV3_1G010640Silver-seed gourdcarcucB0969
CsaV3_1G010640Silver-seed gourdcarcucB1049
CsaV3_1G010640Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010640Cucumber (Gy14) v1cgycucB018
CsaV3_1G010640Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010640Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010640Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010640Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010640Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010640Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010640Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010640Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010640Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010640Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010640Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010640Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010640Wild cucumber (PI 183967)cpicucB009
CsaV3_1G010640Wild cucumber (PI 183967)cpicucB010
CsaV3_1G010640Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010640Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010640Bottle gourd (USVL1VR-Ls)cuclsiB029
CsaV3_1G010640Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010640Melon (DHL92) v3.5.1cucmeB035
CsaV3_1G010640Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010640Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010640Melon (DHL92) v3.6.1cucmedB032
CsaV3_1G010640Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010640Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010640Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010640Watermelon (97103) v1cucwmB050
CsaV3_1G010640Watermelon (97103) v2cucwmbB001
CsaV3_1G010640Watermelon (97103) v2cucwmbB040
CsaV3_1G010640Wax gourdcucwgoB037
CsaV3_1G010640Wax gourdcucwgoB026