CsaV3_1G010630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010630
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6612797 .. 6613022 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTTTCATCAAAACGACGCCGGATTTGAGCCTAACCTCATTGCAGGCTCCGGTCTGCTAGAAACGGGAGTTGCAGAGTACAAGATTTTGGTGGAAAGGGAAAGCTAATGAGAAAGAAATTGTTTCCATGGAAGTGAAGAGTACTGTACAGTACAATAGCTCCATTAGAGTGGACAACGATGAGCATGAGCTTCAGCTTATTGGGCTGGGCCTACACTAG

mRNA sequence

ATGGCCACCTTTCATCAAAACGACGCCGGATTTGAGCCTAACCTCATTGCAGGCTCCGGTCTGCTAGAAACGGGAGTTGCAGAGTACAAGATTTTGAGTACTGTACAGTACAATAGCTCCATTAGAGTGGACAACGATGAGCATGAGCTTCAGCTTATTGGGCTGGGCCTACACTAG

Coding sequence (CDS)

ATGGCCACCTTTCATCAAAACGACGCCGGATTTGAGCCTAACCTCATTGCAGGCTCCGGTCTGCTAGAAACGGGAGTTGCAGAGTACAAGATTTTGAGTACTGTACAGTACAATAGCTCCATTAGAGTGGACAACGATGAGCATGAGCTTCAGCTTATTGGGCTGGGCCTACACTAG

Protein sequence

MATFHQNDAGFEPNLIAGSGLLETGVAEYKILSTVQYNSSIRVDNDEHELQLIGLGLH
Homology
[Close]
BLAST of CsaV3_1G010630 vs. NCBI nr
Match: KGN64506.1 (hypothetical protein Csa_1G062320 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MATFHQNDAGFEPNLIAGSGLLETGVAEYKILSTVQYNSSIRVDNDEHELQLIGLGLH 59
          MATFHQNDAGFEPNLIAGSGLLETGVAEYKILSTVQYNSSIRVDNDEHELQLIGLGLH
Sbjct: 1  MATFHQNDAGFEPNLIAGSGLLETGVAEYKILSTVQYNSSIRVDNDEHELQLIGLGLH 58

[Close]
BLAST of CsaV3_1G010630 vs. TrEMBL
Match: tr|A0A0A0LX22|A0A0A0LX22_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062320 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MATFHQNDAGFEPNLIAGSGLLETGVAEYKILSTVQYNSSIRVDNDEHELQLIGLGLH 59
          MATFHQNDAGFEPNLIAGSGLLETGVAEYKILSTVQYNSSIRVDNDEHELQLIGLGLH
Sbjct: 1  MATFHQNDAGFEPNLIAGSGLLETGVAEYKILSTVQYNSSIRVDNDEHELQLIGLGLH 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64506.11.1e-24100.00hypothetical protein Csa_1G062320 [Cucumis sativus][more]
BLAST of CsaV3_1G010630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LX22|A0A0A0LX22_CUCSA7.2e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010630.1CsaV3_1G010630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010630CSPI01G10550Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010630Wild cucumber (PI 183967)cpicucB009
CsaV3_1G010630Wild cucumber (PI 183967)cpicucB010
CsaV3_1G010630Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010630Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010630Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010630Bottle gourd (USVL1VR-Ls)cuclsiB029
CsaV3_1G010630Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010630Melon (DHL92) v3.5.1cucmeB035
CsaV3_1G010630Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010630Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010630Melon (DHL92) v3.6.1cucmedB032
CsaV3_1G010630Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010630Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010630Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010630Watermelon (97103) v1cucwmB013
CsaV3_1G010630Watermelon (97103) v1cucwmB050
CsaV3_1G010630Watermelon (97103) v2cucwmbB001
CsaV3_1G010630Watermelon (97103) v2cucwmbB030
CsaV3_1G010630Watermelon (97103) v2cucwmbB040
CsaV3_1G010630Wax gourdcucwgoB037
CsaV3_1G010630Wax gourdcucwgoB026
CsaV3_1G010630Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010630Silver-seed gourdcarcucB0529
CsaV3_1G010630Silver-seed gourdcarcucB0672
CsaV3_1G010630Silver-seed gourdcarcucB0969
CsaV3_1G010630Silver-seed gourdcarcucB1049
CsaV3_1G010630Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010630Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010630Cucumber (Gy14) v1cgycucB018
CsaV3_1G010630Cucumber (Gy14) v1cgycucB089
CsaV3_1G010630Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010630Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010630Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010630Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010630Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010630Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010630Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010630Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010630Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010630Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010630Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010630Cucurbita pepo (Zucchini)cpecucB0624