CsaV3_1G010550 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G010550
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	p55
Location	chr1 : 6573368 .. 6574557 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAAGTCATATATATAAAAAGATAGGATTAAATTCATAAAATGAGCAAACAGAATTAAGAATACTTCATAAAATGACACGCATAAAACTATAATAATCAAACGTGCAATAGAGATAATTCTAACTAGTATATATATATAGTAGTATAAATATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAGAAATTTCATATTATAATAAATGCAATCTTTGATTGCATCCACATCTCATGCATCTCTTTAGGGTTTAAGTACTTTTTGTTTTGTTGAAATAGAATTATTGTTATTATTTCATATAATTGAAGTGATTTTGGTAGTGTCCCTAGCTCTCAAGGGTTAGCTCCGAGTTCGACATTCTCCATCTGAAATTTGAGGGTTCTTGCAGGGGATTTTTCTCAGCAATGAAACTATTTCTCATGAAATAAGACGAATTAATTTCACTAGTTTGCCAAGAAGAATCACTTGAATCCCCGGCAAAGGTCTCATAACACAGAACCAAAAGAAAATGAAGCAAAAGATAAATATTACTTCACTTCTCTACTCATTCAACAATTTCCCTTATGGTTCAATTTCCATTTCTTTTCTTCATCACAAACCCATCTCCCAAAAAAATGCCACTCCCTAATTGCTACTCTGTTTTAATCCTCGCTCTTATTCTTTTCACAGCCCCAAATCAATCCACCAAATGCCAAACTTCCTGCGGCCAAATCCAAATTATTACCCATTTTGCGTCAAATACCACCTTCAATGGCGAAATTGATTTAATTAACGTGTTTTTGAGAAATGAGTGATATTTAAATAAGATTTAAA

mRNA sequence

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Coding sequence (CDS)

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Protein sequence

MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKIKK

Homology

[Close]

BLAST of CsaV3_1G010550 vs. NCBI nr
Match: KGN64500.1 (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 1.0e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]

BLAST of CsaV3_1G010550 vs. NCBI nr
Match: KGN64496.1 (p55 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 7.4e-08
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           E  SS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 71  EEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 130

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 131 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of CsaV3_1G010550 vs. NCBI nr
Match: KGN64499.1 (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 9.0e-06
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELI--CSKSNSVKSSQVKGSSS--LATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]

BLAST of CsaV3_1G010550 vs. TrEMBL
Match: tr|A0A0A0LRJ2|A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 6.7e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]

BLAST of CsaV3_1G010550 vs. TrEMBL
Match: tr|A0A0A0LX14|A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           E  SS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 71  EEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 130

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 131 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of CsaV3_1G010550 vs. TrEMBL
Match: tr|A0A0A0LU71|A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELI--CSKSNSVKSSQVKGSSS--LATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64500.1	1.0e-65	100.00	hypothetical protein Csa_1G060770 [Cucumis sativus]	[more]
KGN64496.1	7.4e-08	47.96	p55 [Cucumis sativus]	[more]
KGN64499.1	9.0e-06	40.87	hypothetical protein Csa_1G060760 [Cucumis sativus]	[more]

BLAST of CsaV3_1G010550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRJ2\|A0A0A0LRJ2_CUCSA	6.7e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1	[more]
tr\|A0A0A0LX14\|A0A0A0LX14_CUCSA	4.9e-08	47.96	p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1	[more]
tr\|A0A0A0LU71\|A0A0A0LU71_CUCSA	6.0e-06	40.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010550.1	CsaV3_1G010550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..122

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G010550	Cucumber (Chinese Long) v3	cuccucB044
CsaV3_1G010550	Silver-seed gourd	carcucB0529
CsaV3_1G010550	Silver-seed gourd	carcucB0672
CsaV3_1G010550	Silver-seed gourd	carcucB0969
CsaV3_1G010550	Silver-seed gourd	carcucB1049
CsaV3_1G010550	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G010550	Cucumber (Gy14) v2	cgybcucB247
CsaV3_1G010550	Cucumber (Gy14) v1	cgycucB018
CsaV3_1G010550	Cucumber (Gy14) v1	cgycucB089
CsaV3_1G010550	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G010550	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G010550	Cucurbita maxima (Rimu)	cmacucB0775
CsaV3_1G010550	Cucurbita maxima (Rimu)	cmacucB1005
CsaV3_1G010550	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G010550	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G010550	Cucurbita moschata (Rifu)	cmocucB0760
CsaV3_1G010550	Cucurbita moschata (Rifu)	cmocucB0989
CsaV3_1G010550	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G010550	Cucurbita pepo (Zucchini)	cpecucB0059
CsaV3_1G010550	Cucurbita pepo (Zucchini)	cpecucB0586
CsaV3_1G010550	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G010550	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G010550	Wild cucumber (PI 183967)	cpicucB009
CsaV3_1G010550	Wild cucumber (PI 183967)	cpicucB010
CsaV3_1G010550	Wild cucumber (PI 183967)	cpicucB310
CsaV3_1G010550	Bottle gourd (USVL1VR-Ls)	cuclsiB020
CsaV3_1G010550	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G010550	Bottle gourd (USVL1VR-Ls)	cuclsiB029
CsaV3_1G010550	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G010550	Melon (DHL92) v3.5.1	cucmeB035
CsaV3_1G010550	Melon (DHL92) v3.5.1	cucmeB092
CsaV3_1G010550	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G010550	Melon (DHL92) v3.6.1	cucmedB032
CsaV3_1G010550	Melon (DHL92) v3.6.1	cucmedB085
CsaV3_1G010550	Watermelon (Charleston Gray)	cucwcgB015
CsaV3_1G010550	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G010550	Watermelon (97103) v1	cucwmB013
CsaV3_1G010550	Watermelon (97103) v1	cucwmB050
CsaV3_1G010550	Watermelon (97103) v2	cucwmbB001
CsaV3_1G010550	Watermelon (97103) v2	cucwmbB030
CsaV3_1G010550	Watermelon (97103) v2	cucwmbB040
CsaV3_1G010550	Wax gourd	cucwgoB037