CsaV3_1G010540 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G010540
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	p55
Location	chr1 : 6570441 .. 6570899 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGAAACAAGAATTTTTCTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGACAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCCAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTCCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGA

mRNA sequence

ATGAGAGGAAACAAGAATTTTTCTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGACAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCCAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTCCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGA

Coding sequence (CDS)

ATGAGAGGAAACAAGAATTTTTCTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGACAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCCAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTCCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGA

Protein sequence

MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATGSLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHLVINGPLLACFVSAQTLLMACTTELLPTTSGRQ

Homology

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BLAST of CsaV3_1G010540 vs. NCBI nr
Match: KGN64499.1 (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 2.1e-75
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60
           MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG
Sbjct: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60

Query: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120
           SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL
Sbjct: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120

Query: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 153
           VINGPLLACFVSAQTLLMACTTELLPTTSGRQ
Sbjct: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 152

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BLAST of CsaV3_1G010540 vs. NCBI nr
Match: XP_008440827.1 (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_008440836.1 PREDICTED: uncharacterized protein LOC103485133 isoform X2 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 5.0e-13
Identity = 69/171 (40.35%), Postives = 80/171 (46.78%), Query Frame = 0


Query: 35  DLILKTEETIKKVKSECWKKDNLATGSLLGCFESAQT--------LLVACTAVLP----- 94
           DLI + EE +KK+K    KKD++  G LL  F SA T        LL A T   P     
Sbjct: 152 DLIERVEELVKKLKGVDGKKDSV-NGPLLASFMSAFTQLENWTEQLLSASTVNEPSSPSK 211

Query: 95  -----------------------------------------TENKKALPPSSGSSLTAPL 152
                                                    T+ K     +SGSSLT PL
Sbjct: 212 LSASNNSDPNIEVGPDTPENSRGKKTSGSNXRDNRSEEKRETKIKAQTDQNSGSSLTVPL 271

[Close]

BLAST of CsaV3_1G010540 vs. NCBI nr
Match: KGN64500.1 (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 4   NKNFSNDELI--CSKSNSVKSSQVKGSSS--LATKDLILKTEETIKKVKSECWKKDNLAT 63
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79

Query: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 111
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 134

[Close]

BLAST of CsaV3_1G010540 vs. NCBI nr
Match: KGN64496.1 (p55 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-06
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGH---LVINGPLLACFVSAQTLL 140
           PT+ +K      GSS   P+ DL  KV +MV MLK  G     +++ PLLACFVSAQ LL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 141 MACTTELL 146
            ACT EL+
Sbjct: 121 TACTAELI 128

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BLAST of CsaV3_1G010540 vs. TrEMBL
Match: tr|A0A0A0LU71|A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.4e-75
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60
           MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG
Sbjct: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60

Query: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120
           SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL
Sbjct: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120

Query: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 153
           VINGPLLACFVSAQTLLMACTTELLPTTSGRQ
Sbjct: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 152

[Close]

BLAST of CsaV3_1G010540 vs. TrEMBL
Match: tr|A0A1S3B2P2|A0A1S3B2P2_CUCME (uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485133 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13
Identity = 69/171 (40.35%), Postives = 80/171 (46.78%), Query Frame = 0


Query: 35  DLILKTEETIKKVKSECWKKDNLATGSLLGCFESAQT--------LLVACTAVLP----- 94
           DLI + EE +KK+K    KKD++  G LL  F SA T        LL A T   P     
Sbjct: 152 DLIERVEELVKKLKGVDGKKDSV-NGPLLASFMSAFTQLENWTEQLLSASTVNEPSSPSK 211

Query: 95  -----------------------------------------TENKKALPPSSGSSLTAPL 152
                                                    T+ K     +SGSSLT PL
Sbjct: 212 LSASNNSDPNIEVGPDTPENSRGKKTSGSNXRDNRSEEKRETKIKAQTDQNSGSSLTVPL 271

[Close]

BLAST of CsaV3_1G010540 vs. TrEMBL
Match: tr|A0A0A0LRJ2|A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 4   NKNFSNDELI--CSKSNSVKSSQVKGSSS--LATKDLILKTEETIKKVKSECWKKDNLAT 63
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79

Query: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 111
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 134

[Close]

BLAST of CsaV3_1G010540 vs. TrEMBL
Match: tr|A0A0A0LX14|A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGH---LVINGPLLACFVSAQTLL 140
           PT+ +K      GSS   P+ DL  KV +MV MLK  G     +++ PLLACFVSAQ LL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 141 MACTTELL 146
            ACT EL+
Sbjct: 121 TACTAELI 128

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64499.1	2.1e-75	100.00	hypothetical protein Csa_1G060760 [Cucumis sativus]	[more]
XP_008440827.1	5.0e-13	40.35	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_00...	[more]
KGN64500.1	4.5e-06	40.87	hypothetical protein Csa_1G060770 [Cucumis sativus]	[more]
KGN64496.1	5.9e-06	50.00	p55 [Cucumis sativus]	[more]

BLAST of CsaV3_1G010540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LU71\|A0A0A0LU71_CUCSA	1.4e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1	[more]
tr\|A0A1S3B2P2\|A0A1S3B2P2_CUCME	3.3e-13	40.35	uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LRJ2\|A0A0A0LRJ2_CUCSA	3.0e-06	40.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1	[more]
tr\|A0A0A0LX14\|A0A0A0LX14_CUCSA	3.9e-06	50.00	p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010540.1	CsaV3_1G010540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G010540	Silver-seed gourd	carcucB0529
CsaV3_1G010540	Silver-seed gourd	carcucB0672
CsaV3_1G010540	Silver-seed gourd	carcucB0969
CsaV3_1G010540	Silver-seed gourd	carcucB1049
CsaV3_1G010540	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G010540	Cucumber (Gy14) v2	cgybcucB247
CsaV3_1G010540	Cucumber (Gy14) v1	cgycucB018
CsaV3_1G010540	Cucumber (Gy14) v1	cgycucB089
CsaV3_1G010540	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G010540	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G010540	Cucurbita maxima (Rimu)	cmacucB0775
CsaV3_1G010540	Cucurbita maxima (Rimu)	cmacucB1005
CsaV3_1G010540	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G010540	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G010540	Cucurbita moschata (Rifu)	cmocucB0760
CsaV3_1G010540	Cucurbita moschata (Rifu)	cmocucB0989
CsaV3_1G010540	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G010540	Cucurbita pepo (Zucchini)	cpecucB0059
CsaV3_1G010540	Cucurbita pepo (Zucchini)	cpecucB0586
CsaV3_1G010540	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G010540	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G010540	Wild cucumber (PI 183967)	cpicucB009
CsaV3_1G010540	Wild cucumber (PI 183967)	cpicucB010
CsaV3_1G010540	Wild cucumber (PI 183967)	cpicucB310
CsaV3_1G010540	Bottle gourd (USVL1VR-Ls)	cuclsiB020
CsaV3_1G010540	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G010540	Bottle gourd (USVL1VR-Ls)	cuclsiB029
CsaV3_1G010540	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G010540	Melon (DHL92) v3.5.1	cucmeB035
CsaV3_1G010540	Melon (DHL92) v3.5.1	cucmeB092
CsaV3_1G010540	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G010540	Melon (DHL92) v3.6.1	cucmedB032
CsaV3_1G010540	Melon (DHL92) v3.6.1	cucmedB085
CsaV3_1G010540	Watermelon (Charleston Gray)	cucwcgB015
CsaV3_1G010540	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G010540	Watermelon (97103) v1	cucwmB013
CsaV3_1G010540	Watermelon (97103) v1	cucwmB050
CsaV3_1G010540	Watermelon (97103) v2	cucwmbB001
CsaV3_1G010540	Watermelon (97103) v2	cucwmbB030
CsaV3_1G010540	Watermelon (97103) v2	cucwmbB040
CsaV3_1G010540	Wax gourd	cucwgoB037
CsaV3_1G010540	Cucumber (Chinese Long) v3	cuccucB044