CsaV3_1G010390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6480908 .. 6482491 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCTATTTCCTTAGTGTAGATATAGCATTAGATATTCTGAGAAAGAAACCTGAATTAGCGAAGGAGAGAGAGGGAGATTATGGCATCACAGCTTTGCATATGCTAGCTAGAAAACCATATGCAATTGGAAGCAGCAAAGAGCTTAGCTTTTGGAAAAGACGTATAAACTCACGTAATTATACCTAACAACTTTGGCTTTCTCATTTTTTGGAATATTTTGAAGCATTATGTGATTATGCTTTAATTTGCTAGGCTTCAACGGAATTTACAAAAAAGCTCAAATGCAAACATTAGCCCATGAAGTTGTTGAACGCATATGGAATTTTGTTGTCAAGGATCTTTCAACATGAAAGCTATACAAGTTCCTAAAAACTCCCTCAAGGTTATTGCATGATGCAGCAAGAGTTGGAAATGTTGAGTTTTTGATAATACTCATTCGCTCCTATCCCGATTTCATATGGATGGTTGACGACGACAATAAAACCATATTTCATGTAGCAGCTGAAAATCGACAAGAAGATGTGTTTAGTCTTATACATGAGATCGGAGAGATGAACGATTTCCTTGTCAATGGTTACAATGAAAAGAATAATTGTAACATTCTACACTTAGTTGGAATGTTGGCATCTCCATATCGCCTAAGCGAAGTGTCTGGGTCAGCTCTACAAATGCAATACGAGTTTCGGTGGTTTAAGATAAGTTCTTTGATGCATACATTGCATGTTTTTTTAAACAATAATTGAGAGCGTTATTTTGAAATGTTGTACTTTAACTTCATTCAAGTGGAGAAAATGGTTGTCCCATCCCATTACTTACATGCTCCTGCAGATTTATTTGAAAAATCTAAAAGAGATTGGGCCAAAACAGAGGAAGGGAAAGTCCATAAAAAAGTCCAACCTAATGAAGCGGAAGAAAGGAGAATTATTACATGTACACAAGAGAGTCAGCCTGAATTATCACAAATGAAGCTCAGAAAATGCCATATACAAAACACTACAACAGAAAATGCCATGGAAGCAAATAACATGATCAAAATTGATGAAGTATATATTGAATTGGGGATTGACACACCAATATAGCTGATAACATGATTTCCGGTCCTAAAAATTCATCAATTGTGGTATGTTACAGCAATAGAGAGGAAGCCTCAATGGCTTATATACAGGAATCTCCGAGGATGGATTTTGAAAACAATTTAGATGTTCTATTTGATGAGGTTTCTGTAGTTGAACCTGATGTGGAAAAGGATAATAGTGACGAAAGCAACTCATTCAAGGAACAACTATACAGTTGGCTTGTAAAGAATAGACTGTGTTATGCATGCCATTACTAATAATAAGCTCAACACAGAATGAAAGGAATGAAAATACTAAACAGGGGCCTCTGTTTCCACCCGAAGATTCTAGCTTGGAATGTTAGGGGGCTTGGCTCTCCCTCAAAAGGAGATATTATTAAAGATGTCATGAAGGCACTTGTGCCGACATAGTGATTTTATCTGAAACAAAGTTCACTGTTATTGATAATAAGATTGTTAAATCTCTCTGGAGCTTTATTACTATTGCTTGGGCATATGTTAAAGCCA

mRNA sequence

ATGTTGTACTTTAACTTCATTCAAGTGGAGAAAATGGTTGTCCCATCCCATTACTTACATGCTCCTGCAGATTTATTTGAAAAATCTAAAAGAGATTGGGCCAAAACAGAGGAAGGGAAAGTCCATAAAAAAGTCCAACCTAATGAAGCGGAAGAAAGGAGAATTATTACATGTACACAAGAGAGTCAGCCTGAATTATCACAAATGAAGCTCAGAAAATGCCATATACAAAACACTACAACAGAAAATGCCATGGAAGCAAATAACATGATCAAAATTGATGAAGTATATATTGAATTGGGGATTGACACACCAATATAG

Coding sequence (CDS)

ATGTTGTACTTTAACTTCATTCAAGTGGAGAAAATGGTTGTCCCATCCCATTACTTACATGCTCCTGCAGATTTATTTGAAAAATCTAAAAGAGATTGGGCCAAAACAGAGGAAGGGAAAGTCCATAAAAAAGTCCAACCTAATGAAGCGGAAGAAAGGAGAATTATTACATGTACACAAGAGAGTCAGCCTGAATTATCACAAATGAAGCTCAGAAAATGCCATATACAAAACACTACAACAGAAAATGCCATGGAAGCAAATAACATGATCAAAATTGATGAAGTATATATTGAATTGGGGATTGACACACCAATATAG

Protein sequence

MLYFNFIQVEKMVVPSHYLHAPADLFEKSKRDWAKTEEGKVHKKVQPNEAEERRIITCTQESQPELSQMKLRKCHIQNTTTENAMEANNMIKIDEVYIELGIDTPI
Homology
[Close]
BLAST of CsaV3_1G010390 vs. NCBI nr
Match: KGN64487.1 (hypothetical protein Csa_1G059185 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 5.3e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 12  MVVPSHYLHAPADLFEKSKRDWAKTEEGKVHKKVQPNEAEERRIITCTQESQPELSQMKL 71
           MVVPSHYLHAPADLFEKSKRDWAKTEEGKVHKKVQPNEAEERRIITCTQESQPELSQMKL
Sbjct: 1   MVVPSHYLHAPADLFEKSKRDWAKTEEGKVHKKVQPNEAEERRIITCTQESQPELSQMKL 60

Query: 72  RKCHIQNTTTENAMEANNMIKIDEVYIELGIDTPI 107
           RKCHIQNTTTENAMEANNMIKIDEVYIELGIDTPI
Sbjct: 61  RKCHIQNTTTENAMEANNMIKIDEVYIELGIDTPI 95

[Close]
BLAST of CsaV3_1G010390 vs. TrEMBL
Match: tr|A0A0A0LUN7|A0A0A0LUN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059185 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.5e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 12  MVVPSHYLHAPADLFEKSKRDWAKTEEGKVHKKVQPNEAEERRIITCTQESQPELSQMKL 71
           MVVPSHYLHAPADLFEKSKRDWAKTEEGKVHKKVQPNEAEERRIITCTQESQPELSQMKL
Sbjct: 1   MVVPSHYLHAPADLFEKSKRDWAKTEEGKVHKKVQPNEAEERRIITCTQESQPELSQMKL 60

Query: 72  RKCHIQNTTTENAMEANNMIKIDEVYIELGIDTPI 107
           RKCHIQNTTTENAMEANNMIKIDEVYIELGIDTPI
Sbjct: 61  RKCHIQNTTTENAMEANNMIKIDEVYIELGIDTPI 95

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64487.15.3e-46100.00hypothetical protein Csa_1G059185 [Cucumis sativus][more]
BLAST of CsaV3_1G010390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUN7|A0A0A0LUN7_CUCSA3.5e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059185 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010390.1CsaV3_1G010390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010390Cucsa.085510Cucumber (Gy14) v1cgycucB089
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010390Silver-seed gourdcarcucB0529
CsaV3_1G010390Silver-seed gourdcarcucB1046
CsaV3_1G010390Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010390Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G010390Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010390Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010390Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G010390Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010390Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010390Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010390Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010390Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G010390Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010390Wild cucumber (PI 183967)cpicucB010
CsaV3_1G010390Wild cucumber (PI 183967)cpicucB017
CsaV3_1G010390Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010390Bottle gourd (USVL1VR-Ls)cuclsiB029
CsaV3_1G010390Bottle gourd (USVL1VR-Ls)cuclsiB045
CsaV3_1G010390Melon (DHL92) v3.5.1cucmeB021
CsaV3_1G010390Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010390Melon (DHL92) v3.5.1cucmeB035
CsaV3_1G010390Melon (DHL92) v3.6.1cucmedB019
CsaV3_1G010390Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010390Melon (DHL92) v3.6.1cucmedB032
CsaV3_1G010390Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010390Watermelon (Charleston Gray)cucwcgB060
CsaV3_1G010390Watermelon (97103) v1cucwmB013
CsaV3_1G010390Watermelon (97103) v1cucwmB036
CsaV3_1G010390Watermelon (97103) v2cucwmbB030
CsaV3_1G010390Watermelon (97103) v2cucwmbB040
CsaV3_1G010390Wax gourdcucwgoB037