CsaV3_1G010370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G010370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ankyrin repeat-containing protein At5g02620-like
Location	chr1 : 6465753 .. 6466790 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTTCGACAACCAACAAGATGATAACTGGTGGATATCGGACAACCCTTCTTGTAGCTGCATTGGCTGAACAAACTTCTTTTGTTGAAAAGTTGGTTCAACTTTGATCTTCATCTAACTTGGCTATACAAAATTCAAGTGGAAATATTGTCCTTGATTATGCGGCCGCATCAGAGATGTAAGAATCGCTAAAGCAATGGTTTACAAGAATCCAGATCTTCCAAATATTCATGACGATTTGGAACGAACTCCAGTCATTAAAGCTATAGGTTACAAAATGTAAAGACATGGCTTCCTACCTTTACTCCAACACTGACTTTGAAGCTCTAAATACTTCTCAACAAAATGGACTTCCTTCAGCCACCATCGACAGTGATTATTACGTTTTGCTTCCAAATTATTATCTAAATTATATATCATCAATAATGTTTTAAATGAGAATATTTTCAAGTATATATATCTAAATCTCAGATCTATCAATGATGACACAGCTGATAGTAGTCGAGAGTAGTGTATTGACATCTATCACTGATAAATAGTGACATTCTACTTATTTTTTTATCTGTTTTGGAAAGAGAGCTCAATTATAGAATAAAATTATTTATTACAAATTTTTAATTACTCTTTTCTTTGTTGTAGATATAACATTAGATATTCTGATAAAGAAACCTGAATTGGCAAAGGCACGGATAAACGAAAATGGTGACACAGCTTTGCATATGCTATGCAGAAAGTCATCTGCAATAATTGGTAGCTGCGGCCAGCTTAGCTTTTGGAAAACACATATATTATACACATGAACATTTCTTTCTCATTTGGATATATATATATGTATATATTTATTGAAGCATTATATATATGATTATATCTTTATGAGGTTTAATTTTGTAGGCTTCAATGGAATTTACAACACAGCTTTAATGCAGAGACATTTGCCATCAGAGGCATTCTCCAAGCTATGCAAGTTCATAAAGTTAAAAGACCCTCAAGTTTATTGCACGATGCAGCAAGAGTTGGAAATATTGAGTTCTTGA

mRNA sequence

ATGGATCCTTCGACAACCAACAAGATGATAACTGGTGGATATCGGACAACCCTTCTTGTAGCTGCATTGGCTGAACAAACTTCTTTTGTTGAAAAAGATGTAAGAATCGCTAAAGCAATGGTTTACAAGAATCCAGATCTTCCAAATATTCATGACGATTTGGAACGAACTCCAGTCATTAAAGCTATAGATATAACATTAGATATTCTGATAAAGAAACCTGAATTGGCAAAGGCACGGATAAACGAAAATGGTGACACAGCTTTGCATATGCTATGCAGAAAGTCATCTGCAATAATTGGCTTCAATGGAATTTACAACACAGCTTTAATGCAGAGACATTTGCCATCAGAGGCATTCTCCAAGCTATGCAAGTTCATAAAGTTAAAAGACCCTCAAGTTTATTGCACGATGCAGCAAGAGTTGGAAATATTGAGTTCTTGA

Coding sequence (CDS)

ATGGATCCTTCGACAACCAACAAGATGATAACTGGTGGATATCGGACAACCCTTCTTGTAGCTGCATTGGCTGAACAAACTTCTTTTGTTGAAAAAGATGTAAGAATCGCTAAAGCAATGGTTTACAAGAATCCAGATCTTCCAAATATTCATGACGATTTGGAACGAACTCCAGTCATTAAAGCTATAGATATAACATTAGATATTCTGATAAAGAAACCTGAATTGGCAAAGGCACGGATAAACGAAAATGGTGACACAGCTTTGCATATGCTATGCAGAAAGTCATCTGCAATAATTGGCTTCAATGGAATTTACAACACAGCTTTAATGCAGAGACATTTGCCATCAGAGGCATTCTCCAAGCTATGCAAGTTCATAAAGTTAAAAGACCCTCAAGTTTATTGCACGATGCAGCAAGAGTTGGAAATATTGAGTTCTTGA

Protein sequence

MDPSTTNKMITGGYRTTLLVAALAEQTSFVEKDVRIAKAMVYKNPDLPNIHDDLERTPVIKAIDITLDILIKKPELAKARINENGDTALHMLCRKSSAIIGFNGIYNTALMQRHLPSEAFSKLCKFIKLKDPQVYCTMQQELEILSS

Homology

[Close]

BLAST of CsaV3_1G010370 vs. NCBI nr
Match: XP_022994346.1 (ankyrin repeat-containing protein At5g02620-like [Cucurbita maxima])

HSP 1 Score: 83.2 bits (204), Expect = 8.2e-13
Identity = 70/207 (33.82%), Postives = 88/207 (42.51%), Query Frame = 0


Query: 1   MDPSTTNKMITGGYRTTLLVAALAEQTSFVEK---------------------------- 60
           +D ST    IT    T L +AA A+   FVE                             
Sbjct: 157 IDSSTITMKITDADETALHIAAAAKHIHFVENLVELTSPADLAAKNEKGNTALAFAAASG 216

Query: 61  DVRIAKAMVYKNPDLPNIHDDLERTPVIKAI----------------------------- 120
            VRIAK MV+KNPDLP++HD  + TPV+ A+                             
Sbjct: 217 VVRIAKVMVHKNPDLPDLHDLYKPTPVLMAVAYKRKEMASFLFSKTKFEALDTSEQIELL 276

Query: 121 ---------DITLDILIKKPELAKARINENGDTALHMLCRKSSAI--------------I 128
                    DI L+IL KKPELAK R+ ENGDTALH+L RK SAI               
Sbjct: 277 IETISTDYYDIALEILKKKPELAKERM-ENGDTALHVLARKPSAIGSHAELSFWKTSINS 336

[Close]

BLAST of CsaV3_1G010370 vs. NCBI nr
Match: XP_022954800.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 69/207 (33.33%), Postives = 86/207 (41.55%), Query Frame = 0


Query: 1   MDPSTTNKMITGGYRTTLLVAALAEQTSFVEK---------------------------- 60
           +D ST    IT    T L +AA A+   FVE                             
Sbjct: 157 IDSSTITMKITDADETALHIAAAAKHIHFVENLVQLTSPADLAAKNEKGNTALAFAAASG 216

Query: 61  DVRIAKAMVYKNPDLPNIHDDLERTPVIKAI----------------------------- 120
            VRIAK MV KNPDLP++HD  + TPV+ A+                             
Sbjct: 217 VVRIAKVMVDKNPDLPDLHDLYKPTPVLMAVAYKRKDMASFLFSKTKFEALDTSEQIELL 276

Query: 121 ---------DITLDILIKKPELAKARINENGDTALHMLCRKSSAI--------------I 128
                    DI L+IL KKPELAK ++ ENGDTALH+L RK SAI               
Sbjct: 277 IETISTDYYDIALEILKKKPELAKEKM-ENGDTALHVLARKPSAIGSHAELSFWKTSINS 336

[Close]

BLAST of CsaV3_1G010370 vs. NCBI nr
Match: XP_023542596.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 69/207 (33.33%), Postives = 86/207 (41.55%), Query Frame = 0


Query: 1   MDPSTTNKMITGGYRTTLLVAALAEQTSFVEK---------------------------- 60
           +D ST    IT    T L +AA A+   FVE                             
Sbjct: 161 IDSSTITMKITDADETALHIAAAAKHIHFVENLVELTSSADLAAKNEKGNTALAFAAASG 220

Query: 61  DVRIAKAMVYKNPDLPNIHDDLERTPVIKAI----------------------------- 120
            VRIAK MV KNPDLP++HD  + TPV+ A+                             
Sbjct: 221 VVRIAKVMVDKNPDLPDLHDLYKPTPVLMAVAYKRKDMASFLFSKTKFEALDTSEQIELL 280

Query: 121 ---------DITLDILIKKPELAKARINENGDTALHMLCRKSSAI--------------I 128
                    DI L+IL KKPELAK ++ ENGDTALH+L RK SAI               
Sbjct: 281 IETISTDYYDIALEILKKKPELAKEKM-ENGDTALHVLARKPSAIGSHAELSFWKTSINS 340

[Close]

BLAST of CsaV3_1G010370 vs. NCBI nr
Match: XP_011652584.1 (PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X2 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 7.7e-11
Identity = 62/178 (34.83%), Postives = 78/178 (43.82%), Query Frame = 0


Query: 3   PSTTNKMITGGYRTTLLVAALAEQTSFVEKDVR--------------------------- 62
           PS  +K IT    T L +AA A+  SFVEK ++                           
Sbjct: 46  PSWISKEITSKGNTALHIAAAAKHISFVEKLIKLYSHHQLDLARPNGAGCTALSYAAVSG 105

Query: 63  ---IAKAMVYKNPDLPNIHDDLERTPVIKAI----------------------------- 113
              IA+AMV +N  LP+I D   R PV+KA+                             
Sbjct: 106 VVSIAEAMVLQNNILPDIPDHKGRIPVLKAVIYKRKDMAFYLYHQTNFEGLENNQQFDLL 165

[Close]

BLAST of CsaV3_1G010370 vs. NCBI nr
Match: XP_011652589.1 (PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X3 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 61/172 (35.47%), Postives = 77/172 (44.77%), Query Frame = 0


Query: 3   PSTTNKMITGGYRTTLLVAALAEQTSFVEKDVR--------------------------- 62
           PS  +K IT    T L +AA A+  SFVEK ++                           
Sbjct: 46  PSWISKEITSKGNTALHIAAAAKHISFVEKLIKLYSHHQLDLARPNGAGCTALSYAAVSG 105

Query: 63  ---IAKAMVYKNPDLPNIHDDLERTPVIKAI------------------DITLDILIKKP 113
              IA+AMV +N  LP+I D   R PV+KA+                  DI LDIL KKP
Sbjct: 106 VVSIAEAMVLQNNILPDIPDHKGRIPVLKAVIYKRKDMAFYLYHQTNFEDIALDILNKKP 165

[Close]

BLAST of CsaV3_1G010370 vs. TrEMBL
Match: tr|A0A0A0LRZ3|A0A0A0LRZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060260 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 62/180 (34.44%), Postives = 78/180 (43.33%), Query Frame = 0


Query: 3   PSTTNKMITGGYRTTLLVAALAEQTSFVEKDVR--------------------------- 62
           PS  +K IT    T L +AA A+  SFVEK ++                           
Sbjct: 46  PSWISKEITSKGNTALHIAAAAKHISFVEKLIKLYSHHQLDLARPNGAGCTALSYAAVSG 105

Query: 63  ---IAKAMVYKNPDLPNIHDDLERTPVIKAI----------------------------- 113
              IA+AMV +N  LP+I D   R PV+KA+                             
Sbjct: 106 VVSIAEAMVLQNNILPDIPDHKGRIPVLKAVIYKRKDMAFYLYHQTNFEGLENNQQFDLL 165

[Close]

BLAST of CsaV3_1G010370 vs. TrEMBL
Match: tr|A0A1S3B2F0|A0A1S3B2F0_CUCME (ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC103485059 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.9e-08
Identity = 62/207 (29.95%), Postives = 82/207 (39.61%), Query Frame = 0


Query: 1   MDPSTTNKMITGGYRTTLLVAALAEQTSFVEK---------------------------- 60
           +D S     IT G  T L +AA A   SFVE                             
Sbjct: 170 VDSSAITMKITDGEDTPLHIAAAARHISFVENLVGKYSSDNLAIKNSNGDTALAFAAASG 229

Query: 61  DVRIAKAMVYKNPDLPNIHDDLERTPVIKAI----------------------------- 120
            VRIAK MV KN  LPN++++ ++ PV+ A+                             
Sbjct: 230 VVRIAKVMVDKNEKLPNLYNNSKQFPVLMAVAYKRKEMASFLLSKTDFQTLDEFEQIELL 289

Query: 121 ---------DITLDILIKKPELAKARI-----------NENGDTALHMLCRKSSAIIGFN 131
                    DI LDIL KKPELAKAR+           N  G+TALH+L RKS  +IG +
Sbjct: 290 ISAISSDYYDIALDILTKKPELAKARMGLRDANGNWRENSEGETALHVLSRKSDVVIGSS 349

[Close]

BLAST of CsaV3_1G010370 vs. TrEMBL
Match: tr|A0A1S3B1Y7|A0A1S3B1Y7_CUCME (ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC103485099 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 64  DITLDILIKKPELAKARINENGDTALHMLCRKSSAI--------------IGFNGIYNTA 123
           DI LDIL KKPELAK R+ ENG+TALH+L RK +AI                FN IY TA
Sbjct: 207 DIALDILKKKPELAKERVEENGETALHLLARKPNAIGSSNKLCFWKKYINSRFNRIYRTA 266

Query: 124 LMQRHLPSEAFSKLCKFI 128
           +MQ  L  +   +L  F+
Sbjct: 267 VMQT-LAHQVVERLWNFV 283

[Close]

BLAST of CsaV3_1G010370 vs. TrEMBL
Match: tr|A0A0A0LRU9|A0A0A0LRU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058660 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-06
Identity = 59/197 (29.95%), Postives = 78/197 (39.59%), Query Frame = 0


Query: 1   MDPSTTNKMITGGYRTTLLVAALAEQTSFVEK---------------------------- 60
           +D S     IT G  T L +AA A+  SFVE                             
Sbjct: 172 VDSSAITMKITDGEDTPLHIAAAAKHISFVENLVKEYSSPSDLAIKNGNGDTALAFAAAS 231

Query: 61  -DVRIAKAMVYKNPDLPNIHDDLERTPVIKAI---------------------------- 120
             VRIAK MV  N +LPN+++  +  PV+ A+                            
Sbjct: 232 GVVRIAKVMVDNNAELPNLYNANKPFPVLMAVAYKRKEMASFLLSKTDFQKLNNFEQIEL 291

[Close]

BLAST of CsaV3_1G010370 vs. TrEMBL
Match: tr|A0A1S3B1U8|A0A1S3B1U8_CUCME (uncharacterized protein LOC103485063 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485063 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-05
Identity = 39/86 (45.35%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 64  DITLDILIKKPELAKARINENGDTALHMLCRKSSA-------------IIGFNGIYNTAL 123
           DI LDIL  K  LAK R  ENGDTALH+L RK  A             I  FN +Y TAL
Sbjct: 214 DIALDILKVKSGLAKWREKENGDTALHLLARKPYAIGSSNQLSCLKKYISRFNRVYKTAL 273

Query: 124 MQRHLPSEAFSKLCKFI--KLKDPQV 135
           MQ  L  +    LCKF+   L +P++
Sbjct: 274 MQT-LAHQVVECLCKFVVENLPEPEL 298

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994346.1	8.2e-13	33.82	ankyrin repeat-containing protein At5g02620-like [Cucurbita maxima]	[more]
XP_022954800.1	1.6e-11	33.33	ankyrin repeat-containing protein ITN1-like [Cucurbita moschata]	[more]
XP_023542596.1	1.6e-11	33.33	ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo]	[more]
XP_011652584.1	7.7e-11	34.83	PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X2 [Cucumis ...	[more]
XP_011652589.1	1.7e-10	35.47	PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X3 [Cucumis ...	[more]

BLAST of CsaV3_1G010370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRZ3\|A0A0A0LRZ3_CUCSA	2.8e-09	34.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060260 PE=4 SV=1	[more]
tr\|A0A1S3B2F0\|A0A1S3B2F0_CUCME	6.9e-08	29.95	ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3B1Y7\|A0A1S3B1Y7_CUCME	1.7e-06	47.44	ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0LRU9\|A0A0A0LRU9_CUCSA	4.9e-06	29.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058660 PE=4 SV=1	[more]
tr\|A0A1S3B1U8\|A0A1S3B1U8_CUCME	4.2e-05	45.35	uncharacterized protein LOC103485063 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010370.1	CsaV3_1G010370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G010370	Silver-seed gourd	carcucB0529
CsaV3_1G010370	Silver-seed gourd	carcucB1046
CsaV3_1G010370	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G010370	Cucumber (Gy14) v1	cgycucB089
CsaV3_1G010370	Cucumber (Gy14) v1	cgycucB196
CsaV3_1G010370	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G010370	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G010370	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G010370	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G010370	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G010370	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G010370	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G010370	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G010370	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G010370	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G010370	Wild cucumber (PI 183967)	cpicucB010
CsaV3_1G010370	Wild cucumber (PI 183967)	cpicucB017
CsaV3_1G010370	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G010370	Bottle gourd (USVL1VR-Ls)	cuclsiB029
CsaV3_1G010370	Bottle gourd (USVL1VR-Ls)	cuclsiB045
CsaV3_1G010370	Melon (DHL92) v3.5.1	cucmeB021
CsaV3_1G010370	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G010370	Melon (DHL92) v3.5.1	cucmeB035
CsaV3_1G010370	Melon (DHL92) v3.6.1	cucmedB019
CsaV3_1G010370	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G010370	Melon (DHL92) v3.6.1	cucmedB032
CsaV3_1G010370	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G010370	Watermelon (Charleston Gray)	cucwcgB060
CsaV3_1G010370	Watermelon (97103) v1	cucwmB013
CsaV3_1G010370	Watermelon (97103) v1	cucwmB036
CsaV3_1G010370	Watermelon (97103) v2	cucwmbB030
CsaV3_1G010370	Watermelon (97103) v2	cucwmbB040
CsaV3_1G010370	Wax gourd	cucwgoB037