CsaV3_1G010320 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G010320
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	stigma-specific STIG1-like protein 1
Location	chr1 : 6433661 .. 6434759 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGTGCTTGAATATTTAAGTTAAAAGAGAGATGCAAAAGTGCACCCAATATTTTTCAATCAAATGTATAATGTGGCTTCAAAAAGAGAGAAGATTTGGAATATCAATGTGGGTCTTACTTCACCAACCTCTCTCTAAATCCTAAAGTATAATGCATATCTTATTTCTAATTAATCTATATATACGTGATTTTCTTGGCTTAATTTGGAATTTAATACTTAAGTCAAAAGCGTTACTCGTTTTAATTACCTTGTTTGCTGATTTAGACCAGTCAACTATTGTTTCAAACAGCTCCACCCTATAAATATCTCCTTGCAAGCATTCCATTTTCTCCATCCCCAATAAATTTGAACTCGCCAACTTTCTCTTCTATATATTCTTTAGCCCTCTAGCTCTTTGAATTTTACATAAAATGAAGATCGTAAAGCTATTCCTTTTTCTAGTTTTGGCAATCATATTCTCTCATTATGCATCACATGCAGCTGAAGTTGAAACAAACAGCAAAGAGAATGCTACTAATTTGTCGGATGATGAAGTTTCCAACCATCTTGCTTCGATTGAAGACGAAGATTCTCCGTTGGGTTTGGCTCGCCGTCTTCTCTTCCCCTTCCAATCTTTGCAGAAGGGATTATTGACTTGCAACAAATACCCTAGAGTGTGCAGAAGGAAGGGCAGTGCAGGGCCTGATTGTTGCAAGAAAAAGTGTGTAAACGTTGAGAGAGATAGAAACAACTGTGGAAGGTGTGGAAAGAAATGCAAGTACTCGAAGATATGCTGCAAAGGGAAATGTGTGAATCCATTGTTCAATAGGAAGCATTGTGGAGGCTGCAACATTGAATGCAGTAAAGGAAGCTTCTGCGTCTATGGAATGTGTGGTTATGCTTAATTATTAATTATTTTGGGGAGAAACTATTGTATCCCATTCATAATCGGCAAAGATTACAAAAATTAGAAGAAGAAGAGACTAGAAGAAAGACTTTCGATTGAGAGAAATTGTGAATTTAGATGATTATTAGAGAAATATTATTTGATTATGATTTTACAACTATTTGACAATGAAAAATGTGGATCCTCAACCTGTTTCTCATAATAGTGTCAC

mRNA sequence

ATGAAGATCGTAAAGCTATTCCTTTTTCTAGTTTTGGCAATCATATTCTCTCATTATGCATCACATGCAGCTGAAGTTGAAACAAACAGCAAAGAGAATGCTACTAATTTGTCGGATGATGAAGTTTCCAACCATCTTGCTTCGATTGAAGACGAAGATTCTCCGTTGGGTTTGGCTCGCCGTCTTCTCTTCCCCTTCCAATCTTTGCAGAAGGGATTATTGACTTGCAACAAATACCCTAGAGTGTGCAGAAGGAAGGGCAGTGCAGGGCCTGATTGTTGCAAGAAAAAGTGTGTAAACGTTGAGAGAGATAGAAACAACTGTGGAAGGTGTGGAAAGAAATGCAAGTACTCGAAGATATGCTGCAAAGGGAAATGTGTGAATCCATTGTTCAATAGGAAGCATTGTGGAGGCTGCAACATTGAATGCAGTAAAGGAAGCTTCTGCGTCTATGGAATGTGTGGTTATGCTTAA

Coding sequence (CDS)

ATGAAGATCGTAAAGCTATTCCTTTTTCTAGTTTTGGCAATCATATTCTCTCATTATGCATCACATGCAGCTGAAGTTGAAACAAACAGCAAAGAGAATGCTACTAATTTGTCGGATGATGAAGTTTCCAACCATCTTGCTTCGATTGAAGACGAAGATTCTCCGTTGGGTTTGGCTCGCCGTCTTCTCTTCCCCTTCCAATCTTTGCAGAAGGGATTATTGACTTGCAACAAATACCCTAGAGTGTGCAGAAGGAAGGGCAGTGCAGGGCCTGATTGTTGCAAGAAAAAGTGTGTAAACGTTGAGAGAGATAGAAACAACTGTGGAAGGTGTGGAAAGAAATGCAAGTACTCGAAGATATGCTGCAAAGGGAAATGTGTGAATCCATTGTTCAATAGGAAGCATTGTGGAGGCTGCAACATTGAATGCAGTAAAGGAAGCTTCTGCGTCTATGGAATGTGTGGTTATGCTTAA

Protein sequence

MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLARRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGRCGKKCKYSKICCKGKCVNPLFNRKHCGGCNIECSKGSFCVYGMCGYA

Homology

[Close]

BLAST of CsaV3_1G010320 vs. NCBI nr
Match: XP_004145194.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64481.1 hypothetical protein Csa_1G058155 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 6.0e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR
Sbjct: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsaV3_1G010320 vs. NCBI nr
Match: XP_008440721.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 6.2e-51
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK+ KL LFLVLAI FSHYASHAAEVETNSKENATNLSDDEVSNHLA IEDEDSP+GLAR
Sbjct: 1   MKLSKLLLFLVLAITFSHYASHAAEVETNSKENATNLSDDEVSNHLAPIEDEDSPMGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsaV3_1G010320 vs. NCBI nr
Match: XP_008440707.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK  KL   LV   I SHY +HAA+ E ++KEN T+ SDDE  + L+ +E E+SP G  R
Sbjct: 1   MKSSKLLFLLVALTIVSHYVAHAAKAEMSNKENVTS-SDDETFDQLSPMETENSPPGSLR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
            LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  GLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 107

[Close]

BLAST of CsaV3_1G010320 vs. NCBI nr
Match: XP_004145195.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIED-EDSPLGLA 60
           MK  K     V  II SHY +HA+ VE ++KEN T+L DDE  + L+ +E+ ++SP G  
Sbjct: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSL-DDETFDQLSPVEETKNSPSGSV 60

Query: 61  RRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
           R LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  RGLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 108

[Close]

BLAST of CsaV3_1G010320 vs. NCBI nr
Match: KGN64480.1 (hypothetical protein Csa_1G058150 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 29  NSKENATNLSDDEVSNHLASIED-EDSPLGLARRLLFPFQSLQKGLLTCNKYPRVCRRKG 88
           ++KEN T+L DDE  + L+ +E+ ++SP G  R LLF F+SLQKG +TCNKYPRVCR KG
Sbjct: 2   SNKENVTSL-DDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKG-VTCNKYPRVCRAKG 61

Query: 89  SAGPDCCKKKCVNVERDRNNCG 110
           S GPDCC +KCVNVE DRNNCG
Sbjct: 62  SKGPDCCNRKCVNVETDRNNCG 81

[Close]

BLAST of CsaV3_1G010320 vs. TAIR10
Match: AT1G11925.1 (Stigma-specific Stig1 family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 74  LTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           LTC+K  +VCR KGS G +CC+KKCV++  ++ NCGR
Sbjct: 57  LTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCGR 93

[Close]

BLAST of CsaV3_1G010320 vs. TrEMBL
Match: tr|A0A0A0LWX5|A0A0A0LWX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058155 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.0e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR
Sbjct: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsaV3_1G010320 vs. TrEMBL
Match: tr|A0A1S3B2E0|A0A1S3B2E0_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485051 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.1e-51
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK+ KL LFLVLAI FSHYASHAAEVETNSKENATNLSDDEVSNHLA IEDEDSP+GLAR
Sbjct: 1   MKLSKLLLFLVLAITFSHYASHAAEVETNSKENATNLSDDEVSNHLAPIEDEDSPMGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsaV3_1G010320 vs. TrEMBL
Match: tr|A0A1S3B1R3|A0A1S3B1R3_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485044 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK  KL   LV   I SHY +HAA+ E ++KEN T+ SDDE  + L+ +E E+SP G  R
Sbjct: 1   MKSSKLLFLLVALTIVSHYVAHAAKAEMSNKENVTS-SDDETFDQLSPMETENSPPGSLR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
            LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  GLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 107

[Close]

BLAST of CsaV3_1G010320 vs. TrEMBL
Match: tr|A0A0A0LRD7|A0A0A0LRD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058150 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 29  NSKENATNLSDDEVSNHLASIED-EDSPLGLARRLLFPFQSLQKGLLTCNKYPRVCRRKG 88
           ++KEN T+L DDE  + L+ +E+ ++SP G  R LLF F+SLQKG +TCNKYPRVCR KG
Sbjct: 2   SNKENVTSL-DDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKG-VTCNKYPRVCRAKG 61

Query: 89  SAGPDCCKKKCVNVERDRNNCG 110
           S GPDCC +KCVNVE DRNNCG
Sbjct: 62  SKGPDCCNRKCVNVETDRNNCG 81

[Close]

BLAST of CsaV3_1G010320 vs. TrEMBL
Match: tr|A0A061GGS8|A0A061GGS8_THECC (Stigma-specific Stig1 family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_030273 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MKIVKLFLFLVL----AIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPL 60
           MK+VK+FL L L    AI  S  A    E   ++ ++A+ ++DD     L S + ++ P 
Sbjct: 60  MKLVKVFLMLALLMASAISLSAAAPSEEEPFVDNDDDASEVADD----LLPSADGQEQPT 119

Query: 61  GLARRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
            L     F  Q   + ++TCNKYPRVCR  GS GPDCCKKKCVNV+ DR NCG
Sbjct: 120 SLRGASRFLAQK-PRAVMTCNKYPRVCRVAGSPGPDCCKKKCVNVKTDRLNCG 167

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145194.1	6.0e-54	100.00	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64481.1 hy...	[more]
XP_008440721.1	6.2e-51	94.55	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo]	[more]
XP_008440707.1	1.8e-26	62.39	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo]	[more]
XP_004145195.1	1.3e-24	60.00	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus]	[more]
KGN64480.1	2.8e-19	64.63	hypothetical protein Csa_1G058150 [Cucumis sativus]	[more]

BLAST of CsaV3_1G010320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11925.1	3.0e-07	56.76	Stigma-specific Stig1 family protein	[more]

BLAST of CsaV3_1G010320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWX5\|A0A0A0LWX5_CUCSA	4.0e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058155 PE=4 SV=1	[more]
tr\|A0A1S3B2E0\|A0A1S3B2E0_CUCME	4.1e-51	94.55	stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485051 PE=...	[more]
tr\|A0A1S3B1R3\|A0A1S3B1R3_CUCME	1.2e-26	62.39	stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485044 PE=...	[more]
tr\|A0A0A0LRD7\|A0A0A0LRD7_CUCSA	1.9e-19	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058150 PE=4 SV=1	[more]
tr\|A0A061GGS8\|A0A061GGS8_THECC	1.7e-12	45.13	Stigma-specific Stig1 family protein, putative OS=Theobroma cacao OX=3641 GN=TCM...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006969	Stig1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010320.1	CsaV3_1G010320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006969	Stigma-specific protein Stig1	PFAM	PF04885	Stig1	coord: 22..157 e-value: 5.8E-41 score: 140.1
IPR006969	Stigma-specific protein Stig1	PANTHER	PTHR33227	FAMILY NOT NAMED	coord: 1..157
None	No IPR available	PANTHER	PTHR33227:SF13	SUBFAMILY NOT NAMED	coord: 1..157

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G010320	Silver-seed gourd	carcucB0529
CsaV3_1G010320	Silver-seed gourd	carcucB1046
CsaV3_1G010320	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G010320	Cucumber (Gy14) v1	cgycucB196
CsaV3_1G010320	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G010320	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G010320	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G010320	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G010320	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G010320	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G010320	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G010320	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G010320	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G010320	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G010320	Wild cucumber (PI 183967)	cpicucB010
CsaV3_1G010320	Wild cucumber (PI 183967)	cpicucB017
CsaV3_1G010320	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G010320	Bottle gourd (USVL1VR-Ls)	cuclsiB045
CsaV3_1G010320	Melon (DHL92) v3.5.1	cucmeB021
CsaV3_1G010320	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G010320	Melon (DHL92) v3.5.1	cucmeB035
CsaV3_1G010320	Melon (DHL92) v3.6.1	cucmedB019
CsaV3_1G010320	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G010320	Melon (DHL92) v3.6.1	cucmedB032
CsaV3_1G010320	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G010320	Watermelon (Charleston Gray)	cucwcgB060
CsaV3_1G010320	Watermelon (97103) v1	cucwmB013
CsaV3_1G010320	Watermelon (97103) v1	cucwmB036
CsaV3_1G010320	Watermelon (97103) v2	cucwmbB030
CsaV3_1G010320	Wax gourd	cucwgoB037