CsaV3_1G009270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5773769 .. 5774407 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTCGGCCGCTTGCCACTAACTCGCCGAGAAAAACCGGAGTTTCCTCTTGGCTCTGCGTATTCGAGAAAGGCGTTTCCATTTTCCAGACTTGTTTTAGAGCGAAAAACAGAGGCTCGTCACTCTGGGACTTCACCATTCTTCATTAAGAGTTAGCACCTTTTCTTAGCTTTCCCTTTTCTTTTTCCTTTATTTCGACTGTTATTGTTTCAAGTTCATTGTTTTCTTGAGAATTTCTTAGCGTCATTCATAGACTGAAACTTATTTGCATGACTCATTGGCTAAGTAGGAGTTTGAAATAAACAATGCTCGGTTTTGTTTTTTACGTGGGAATGAAGTGGGTTCTTGGGGGAAATAAGTGGGAAATTTTGACTGTGGATGCAAAGAAACTCTTCAATGAAAATGTCTTATTTGAACTTTTTGTTTTTCGCTCTTGTGGATTTTTCCTTTTTTTGGAACCCCATATCCGATTAACTGTTTGTGGACTTATCTAGCCATGATGTAATTTTTGTTTGGTGGAGAGGGAAAGAATTTTTGTTTTTCGCCTCTTCTAATATGAAAGATGTTGTGCATTGAAGGATCTCCCAAAAAGCTGGTCGAGGCTTCTCATGAAAGCCGTGGGAAGCTTTCTGTCTCCTGA

mRNA sequence

CTCGGCCGCTTGCCACTAACTCGCCGAGAAAAACCGGAGTTTCCTCTTGGCTCTGCGTATTCGAGAAAGGCGTTTCCATTTTCCAGACTTGTTTTAGAGCGAAAAACAGAGGCTCGTCACTCTGGGACTTCACCATTCTTCATTAAGAGATCTCCCAAAAAGCTGGTCGAGGCTTCTCATGAAAGCCGTGGGAAGCTTTCTGTCTCCTG

Coding sequence (CDS)

CTCGGCCGCTTGCCACTAACTCGCCGAGAAAAACCGGAGTTTCCTCTTGGCTCTGCGTATTCGAGAAAGGCGTTTCCATTTTCCAGACTTGTTTTAGAGCGAAAAACAGAGGCTCGTCACTCTGGGACTTCACCATTCTTCATTAAGAGATCTCCCAAAAAGCTGGTCGAGGCTTCTCATGAAAGCCGTGGGAAGCTTTCTGTCTCCTG

Protein sequence

LGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASHESRGKLSVSX
Homology
[Close]
BLAST of CsaV3_1G009270 vs. NCBI nr
Match: KGN64373.1 (hypothetical protein Csa_1G050120 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  LGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASH 60
          LGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASH
Sbjct: 2  LGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASH 61

Query: 61 ESRGKLSVS 70
          ESRGKLSVS
Sbjct: 62 ESRGKLSVS 70

[Close]
BLAST of CsaV3_1G009270 vs. TrEMBL
Match: tr|A0A0A0LRF2|A0A0A0LRF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050120 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.8e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  LGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASH 60
          LGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASH
Sbjct: 2  LGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASH 61

Query: 61 ESRGKLSVS 70
          ESRGKLSVS
Sbjct: 62 ESRGKLSVS 70

The following BLAST results are available for this feature:
BLAST of CsaV3_1G009270 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64373.11.3e-29100.00hypothetical protein Csa_1G050120 [Cucumis sativus][more]
BLAST of CsaV3_1G009270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRF2|A0A0A0LRF2_CUCSA8.8e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050120 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G009270.1CsaV3_1G009270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G009270Watermelon (97103) v2cucwmbB030
CsaV3_1G009270Watermelon (97103) v2cucwmbB056
CsaV3_1G009270Watermelon (97103) v2cucwmbB071
CsaV3_1G009270Wax gourdcucwgoB033
CsaV3_1G009270Wax gourdcucwgoB073
CsaV3_1G009270Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G009270Silver-seed gourdcarcucB0397
CsaV3_1G009270Silver-seed gourdcarcucB0529
CsaV3_1G009270Silver-seed gourdcarcucB1046
CsaV3_1G009270Cucumber (Gy14) v2cgybcucB002
CsaV3_1G009270Cucumber (Gy14) v1cgycucB237
CsaV3_1G009270Cucumber (Gy14) v1cgycucB592
CsaV3_1G009270Cucumber (Gy14) v1cgycucB595
CsaV3_1G009270Cucurbita maxima (Rimu)cmacucB0078
CsaV3_1G009270Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G009270Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G009270Cucurbita moschata (Rifu)cmocucB0066
CsaV3_1G009270Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G009270Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G009270Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G009270Cucurbita pepo (Zucchini)cpecucB0439
CsaV3_1G009270Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G009270Wild cucumber (PI 183967)cpicucB001
CsaV3_1G009270Wild cucumber (PI 183967)cpicucB074
CsaV3_1G009270Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G009270Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G009270Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G009270Melon (DHL92) v3.5.1cucmeB066
CsaV3_1G009270Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G009270Melon (DHL92) v3.6.1cucmedB062
CsaV3_1G009270Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G009270Watermelon (Charleston Gray)cucwcgB080
CsaV3_1G009270Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G009270Watermelon (97103) v1cucwmB013