CsaV3_1G009160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5716800 .. 5717074 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACAGTAAAGGTTTAGAAAGGCGGAAACTTTACGGCTTGAGCTTATCGCGCTAACGATTCCATATGTAGCCAAAGCTGAGCTAGTGAGCCCAATAGTAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

mRNA sequence

ATGGGTACAGTAAAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

Coding sequence (CDS)

ATGGGTACAGTAAAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

Protein sequence

MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDGG
Homology
[Close]
BLAST of CsaV3_1G009160 vs. NCBI nr
Match: KGN64360.1 (hypothetical protein Csa_1G049990 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60
          MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG
Sbjct: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]
BLAST of CsaV3_1G009160 vs. TrEMBL
Match: tr|A0A0A0LR19|A0A0A0LR19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G049990 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60
          MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG
Sbjct: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:
BLAST of CsaV3_1G009160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64360.12.1e-26100.00hypothetical protein Csa_1G049990 [Cucumis sativus][more]
BLAST of CsaV3_1G009160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LR19|A0A0A0LR19_CUCSA1.4e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G049990 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G009160.1CsaV3_1G009160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G009160CsGy1G009110Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G009160Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G009160Silver-seed gourdcarcucB0529
CsaV3_1G009160Silver-seed gourdcarcucB0655
CsaV3_1G009160Silver-seed gourdcarcucB1046
CsaV3_1G009160Cucumber (Gy14) v1cgycucB592
CsaV3_1G009160Cucumber (Gy14) v1cgycucB595
CsaV3_1G009160Cucurbita maxima (Rimu)cmacucB0078
CsaV3_1G009160Cucurbita maxima (Rimu)cmacucB0186
CsaV3_1G009160Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G009160Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G009160Cucurbita maxima (Rimu)cmacucB0484
CsaV3_1G009160Cucurbita moschata (Rifu)cmocucB0066
CsaV3_1G009160Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G009160Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G009160Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G009160Cucurbita pepo (Zucchini)cpecucB0439
CsaV3_1G009160Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G009160Wild cucumber (PI 183967)cpicucB001
CsaV3_1G009160Wild cucumber (PI 183967)cpicucB074
CsaV3_1G009160Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G009160Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G009160Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G009160Melon (DHL92) v3.5.1cucmeB066
CsaV3_1G009160Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G009160Melon (DHL92) v3.6.1cucmedB062
CsaV3_1G009160Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G009160Watermelon (Charleston Gray)cucwcgB080
CsaV3_1G009160Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G009160Watermelon (97103) v1cucwmB013
CsaV3_1G009160Watermelon (97103) v2cucwmbB030
CsaV3_1G009160Watermelon (97103) v2cucwmbB056
CsaV3_1G009160Watermelon (97103) v2cucwmbB071
CsaV3_1G009160Watermelon (97103) v2cucwmbB088
CsaV3_1G009160Wax gourdcucwgoB033
CsaV3_1G009160Wax gourdcucwgoB073