CsaV3_1G009110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5668559 .. 5670589 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGACGTTAAAGAAAGAGCCTACTCAAAAAAGGAAGACGACAACAACCACAGACGACAAAGGAAAAAAGACCTTCTCCTACAGCTCGTCATCTGAGACAGACAGTCCACGCCGTTCATATGCTGAAGTGCTGACAAATGACAGCTCCTCCGACTCTGGTTCTCCTAGAACACTCCCCTCCGATTTCAAAGGAATAAAGAAGGAAGAAACATCCACTGGGGATTTTGATTCTCTTGATTGGAATAAGACAGTAGTGATCACAAGAAGATACTTTCATGATGACGGGAAGAAAATCATGTCAAAACTCCAAGAACAGCTGGATCTTAGCATCATCTATAAACCCTTCCATGCTGAAAAGGCTGTGGTAACAATCGAAGATAAAAATTTAGTGAACCTCTTCTGCAAGAATAGAGGATGGACCGTTGGATCGGTATAGCAACCTAGAGGGGGGTGAATAGGGTTTAAATAAACTTTTTGACAAATAAAAAGTAAATCAACTAATTAGATATTTTTTAAAATTTAAATAAAGAACTTTGTAAACTTTGTTAAATAACAAGATTGATAAAAAGATATGAATGGAAGTATGCAATCAAACTCAACCAATAAGAATATGTAACTAAAATTAAATTAAAAAATAATTAGAAAAGAGTTAGAGAAGAAGACACCGTAATTTTATAGTGGTTCGGTTAAACTCAACCTACATCCACTTTCCCAAGCACCTCTTGGGATTTTGATTGAAAATCTTCTTTGGACTCTTTCCACGGATTTGAGCCGAACCGATTCTTGCTCCTTTTTCGGGTTCAAGAGCAAACCCGATCCTTTCCACGGGTTAGGATCCAATCGTTACAATATGTTGAAGTTTTTAAATCATGCAAAAGAAAAACTCTCTAAAAGAGTGAGTATACAATTTGAAGCTCACAAATTTAATCCTCACAATACAATAAGAAGCTCTCAAGAATAAGATGAAAAGAATAAAAATTGGAAGCTTTAGAGGATTGTAAAGATTTTTAATGATCTTGTGTAAATGTGAAGTATTTAAAAAGAGAGGAAAGATAAATTCAAAATCATTTGGGTCATTAGATATAAGTAAAAGAAAAATGAATGGTTAAGATTTAAACTTAATTAGCCGTTAGACACAATACAAATAATAATATAATAATATGTCTTTTCAAAATACTTTGTTTAAAAAGAAATCAATAAAGCAACTTCACCATCTTTTAAAACAACTAGGCGTTAGACACAAGGAAAAATAATAATATTAAAATCATTTTCTTTTTAAATTCATTTTCTTTATAAAAGCCAATAAAACATAACAAAAAAACCACATTTGTTACTCCTTCATTGCTCCAAGTGGCTTTCTCTAATTGGTTCAAATTGAATGCTTGGTCGCCACGTCACCATCTCGGGTATTTTTCCGTTAACCTTCTTTTAGCAATATTTTCTTCATTTAAACTTCGATTTGGGTGATTCAAGAGGCGTTAGAATCATTTTTCCAAGCTCTACGATATGGTCTATTCAAATTAAGAAAATTGTCAATAAAAAAAATCAGATTTGTTATCATCAAAACATAAATTAATTGAATAATTAAAATAAATTAATTTGAGATTAAGGGCCAAAAAGCCAACATGGACTACGGTTGGAAAGTTCTACGTCAAATTTGAGGCTTGGAATATAGCTAAACACACTTCCTCAAAGCTCTTGCCAAGTTATGGTGGATGGGTTAAATTCAAAGGTATCACCCTTCATGCATGGAACTATTCGTCTTTTTATCAAATCGGAGAAGCATGTGGCAGATTTGTTGAAGTTGCAAAAGCAACCAGAGACAGGTTCGATCTCATTGAGGCGGATATCAAAATCAAATACAACTACTCGGGCTTTATACCTGCTTTTGTTATGATTGTCGATGAAGAAGGTATTCCATTTACAATCCAGACTGTAGTTCAAGCTGAAGGAAAATGGCTTATAGAAAGAAACCCCAGAATACATGGTACTTTCACCAACGAAGCAGCAAAGAACTTCAATGAATTCA

mRNA sequence

ATGCTGACGTTAAAGAAAGAGCCTACTCAAAAAAGGAAGACGACAACAACCACAGACGACAAAGGAAAAAAGACCTTCTCCTACAGCTCGTCATCTGAGACAGACAGTCCACGCCGTTCATATGCTGAAGTGCTGACAAATGACAGCTCCTCCGACTCTGCATGTGGCAGATTTGTTGAAGTTGCAAAAGCAACCAGAGACAGGTTCGATCTCATTGAGGCGGATATCAAAATCAAATACAACTACTCGGGCTTTATACCTGCTTTTGTTATGATTGTCGATGAAGAAGGTATTCCATTTACAATCCAGACTGTAGTTCAAGCTGAAGGAAAATGGCTTATAGAAAGAAACCCCAGAATACATGGTACTTTCACCAACGAAGCAGCAAAGAACTTCAATGAATTCA

Coding sequence (CDS)

ATGCTGACGTTAAAGAAAGAGCCTACTCAAAAAAGGAAGACGACAACAACCACAGACGACAAAGGAAAAAAGACCTTCTCCTACAGCTCGTCATCTGAGACAGACAGTCCACGCCGTTCATATGCTGAAGTGCTGACAAATGACAGCTCCTCCGACTCTGCATGTGGCAGATTTGTTGAAGTTGCAAAAGCAACCAGAGACAGGTTCGATCTCATTGAGGCGGATATCAAAATCAAATACAACTACTCGGGCTTTATACCTGCTTTTGTTATGATTGTCGATGAAGAAGGTATTCCATTTACAATCCAGACTGTAGTTCAAGCTGAAGGAAAATGGCTTATAGAAAGAAACCCCAGAATACATGGTACTTTCACCAACGAAGCAGCAAAGAACTTCAATGAATTCA

Protein sequence

MLTLKKEPTQKRKTTTTTDDKGKKTFSYSSSSETDSPRRSYAEVLTNDSSSDSACGRFVEVAKATRDRFDLIEADIKIKYNYSGFIPAFVMIVDEEGIPFTIQTVVQAEGKWLIERNPRIHGTFTNEAAKNFNEFX
Homology
[Close]
BLAST of CsaV3_1G009110 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.5 bits (275), Expect = 4.4e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 54  ACGRFVEVAKATRDRFDLIEADIKIKYNYSGFIPAFVMIVDEEGIPFTIQTVVQAEGKWL 113
           ACG F+EVAK TR+  DLIEA I++K NYSGFIPAF+ ++D+E   + IQ +V+ EGKW 
Sbjct: 239 ACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWH 298

Query: 114 IERNPRIHGTFTNEAAKNFNEF 136
           + RNP IHGTFT EAA+ F+EF
Sbjct: 299 LGRNPSIHGTFTREAARRFDEF 320

[Close]
BLAST of CsaV3_1G009110 vs. NCBI nr
Match: KGN47664.1 (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-07
Identity = 25/58 (43.10%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 54  ACGRFVEVAKATRDRFDLIEADIKIKYNYSGFIPAFVMIVDEEGIPFTIQTVVQAEGK 112
           ACG F+E+ +  + + ++ +A +K+K N++GFIPAF+ + D++G  F +Q++VQAEGK
Sbjct: 93  ACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFINVFDKKGNSFLVQSIVQAEGK 150

[Close]
BLAST of CsaV3_1G009110 vs. NCBI nr
Match: KGN61118.1 (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 6.8e-06
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 83  SGFIPAFVMIVDEEGIPFTIQTVVQAEGKWLIERNPRIHGTFTNEAAKNFNEF 136
           S F+PA++ I D+ G  F IQ V   +GKWL+ERN R HG F ++A  +F EF
Sbjct: 6   SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEF 58

[Close]
BLAST of CsaV3_1G009110 vs. NCBI nr
Match: XP_016902104.1 (PREDICTED: uncharacterized protein LOC107991539 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 5.8e-05
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 41 YAEVLTNDSSSDSACGRFVEVAKATRDRFDLIEADIKIKYNYSGFIPAFVMIVDEEG 98
          +A  L      + ACG F+EVAK T ++ +LIEA IKI+ NY+GFI A + I+DEEG
Sbjct: 37 HARNLNTLKQIEEACGGFIEVAKETIEKSELIEALIKIEENYTGFILANIKIIDEEG 93

[Close]
BLAST of CsaV3_1G009110 vs. TrEMBL
Match: tr|E5GB30|E5GB30_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 54  ACGRFVEVAKATRDRFDLIEADIKIKYNYSGFIPAFVMIVDEEGIPFTIQTVVQAEGKWL 113
           ACG F+EVAK TR+  DLIEA I++K NYSGFIPAF+ ++D+E   + IQ +V+ EGKW 
Sbjct: 239 ACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWH 298

Query: 114 IERNPRIHGTFTNEAAKNFNEF 136
           + RNP IHGTFT EAA+ F+EF
Sbjct: 299 LGRNPSIHGTFTREAARRFDEF 320

[Close]
BLAST of CsaV3_1G009110 vs. TrEMBL
Match: tr|A0A0A0KFP0|A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 25/58 (43.10%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 54  ACGRFVEVAKATRDRFDLIEADIKIKYNYSGFIPAFVMIVDEEGIPFTIQTVVQAEGK 112
           ACG F+E+ +  + + ++ +A +K+K N++GFIPAF+ + D++G  F +Q++VQAEGK
Sbjct: 93  ACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFINVFDKKGNSFLVQSIVQAEGK 150

[Close]
BLAST of CsaV3_1G009110 vs. TrEMBL
Match: tr|A0A0A0LH82|A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 83  SGFIPAFVMIVDEEGIPFTIQTVVQAEGKWLIERNPRIHGTFTNEAAKNFNEF 136
           S F+PA++ I D+ G  F IQ V   +GKWL+ERN R HG F ++A  +F EF
Sbjct: 6   SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEF 58

[Close]
BLAST of CsaV3_1G009110 vs. TrEMBL
Match: tr|A0A1S4E1K3|A0A1S4E1K3_CUCME (uncharacterized protein LOC107991539 OS=Cucumis melo OX=3656 GN=LOC107991539 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-05
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 41 YAEVLTNDSSSDSACGRFVEVAKATRDRFDLIEADIKIKYNYSGFIPAFVMIVDEEG 98
          +A  L      + ACG F+EVAK T ++ +LIEA IKI+ NY+GFI A + I+DEEG
Sbjct: 37 HARNLNTLKQIEEACGGFIEVAKETIEKSELIEALIKIEENYTGFILANIKIIDEEG 93

The following BLAST results are available for this feature:
BLAST of CsaV3_1G009110 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33672.14.4e-2160.98hypothetical protein [Cucumis melo subsp. melo][more]
KGN47664.12.8e-0743.10hypothetical protein Csa_6G367105 [Cucumis sativus][more]
KGN61118.16.8e-0649.06hypothetical protein Csa_2G055060 [Cucumis sativus][more]
XP_016902104.15.8e-0550.88PREDICTED: uncharacterized protein LOC107991539 [Cucumis melo][more]
BLAST of CsaV3_1G009110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GB30|E5GB30_CUCME2.9e-2160.98Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A0A0KFP0|A0A0A0KFP0_CUCSA1.8e-0743.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367105 PE=4 SV=1[more]
tr|A0A0A0LH82|A0A0A0LH82_CUCSA4.5e-0649.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1[more]
tr|A0A1S4E1K3|A0A1S4E1K3_CUCME3.8e-0550.88uncharacterized protein LOC107991539 OS=Cucumis melo OX=3656 GN=LOC107991539 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G009110.1CsaV3_1G009110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G009110Cucsa.391600Cucumber (Gy14) v1cgycucB592
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G009110Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G009110Silver-seed gourdcarcucB0529
CsaV3_1G009110Silver-seed gourdcarcucB0655
CsaV3_1G009110Silver-seed gourdcarcucB1046
CsaV3_1G009110Cucumber (Gy14) v2cgybcucB002
CsaV3_1G009110Cucumber (Gy14) v1cgycucB595
CsaV3_1G009110Cucurbita maxima (Rimu)cmacucB0078
CsaV3_1G009110Cucurbita maxima (Rimu)cmacucB0186
CsaV3_1G009110Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G009110Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G009110Cucurbita maxima (Rimu)cmacucB0484
CsaV3_1G009110Cucurbita moschata (Rifu)cmocucB0066
CsaV3_1G009110Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G009110Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G009110Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G009110Cucurbita pepo (Zucchini)cpecucB0439
CsaV3_1G009110Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G009110Wild cucumber (PI 183967)cpicucB001
CsaV3_1G009110Wild cucumber (PI 183967)cpicucB074
CsaV3_1G009110Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G009110Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G009110Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G009110Melon (DHL92) v3.5.1cucmeB066
CsaV3_1G009110Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G009110Melon (DHL92) v3.6.1cucmedB062
CsaV3_1G009110Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G009110Watermelon (Charleston Gray)cucwcgB080
CsaV3_1G009110Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G009110Watermelon (97103) v1cucwmB013
CsaV3_1G009110Watermelon (97103) v2cucwmbB030
CsaV3_1G009110Watermelon (97103) v2cucwmbB056
CsaV3_1G009110Watermelon (97103) v2cucwmbB071
CsaV3_1G009110Watermelon (97103) v2cucwmbB088
CsaV3_1G009110Wax gourdcucwgoB033
CsaV3_1G009110Wax gourdcucwgoB073