CsaV3_1G008510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G008510
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5322385 .. 5322618 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTGAAACCTTCAAGAATAGCAAAATAAGAAAGCTCATTTCTATTCAAAACAAAATGTTGTCAGATCCAAATTTCAATGACAATACTAGACTTCCATATGGATCTCTTGAACTATGGAATTTGATCTGGAAAGCATACTTAGCTTGTCCGCAACTTAAAATAAAATGGGAGATATGCGCAAAGTTACAACTTAAATCCAAGGCTAAATTCTTGCCTACACAGGAATAA

mRNA sequence

ATGAAAAGTGAAACCTTCAAGAATAGCAAAATAAGAAAGCTCATTTCTATTCAAAACAAAATGTTGTCAGATCCAAATTTCAATGACAATACTAGACTTCCATATGGATCTCTTGAACTATGGAATTTGATCTGGAAAGCATACTTAGCTTGTCCGCAACTTAAAATAAAATGGGAGATATGCGCAAAGTTACAACTTAAATCCAAGGCTAAATTCTTGCCTACACAGGAATAA

Coding sequence (CDS)

ATGAAAAGTGAAACCTTCAAGAATAGCAAAATAAGAAAGCTCATTTCTATTCAAAACAAAATGTTGTCAGATCCAAATTTCAATGACAATACTAGACTTCCATATGGATCTCTTGAACTATGGAATTTGATCTGGAAAGCATACTTAGCTTGTCCGCAACTTAAAATAAAATGGGAGATATGCGCAAAGTTACAACTTAAATCCAAGGCTAAATTCTTGCCTACACAGGAATAA

Protein sequence

MKSETFKNSKIRKLISIQNKMLSDPNFNDNTRLPYGSLELWNLIWKAYLACPQLKIKWEICAKLQLKSKAKFLPTQE
Homology
[Close]
BLAST of CsaV3_1G008510 vs. NCBI nr
Match: KGN64311.1 (hypothetical protein Csa_1G046085 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MKSETFKNSKIRKLISIQNKMLSDPNFNDNTRLPYGSLELWNLIWKAYLACPQLKIKWEI 60
          MKSETFKNSKIRKLISIQNKMLSDPNFNDNTRLPYGSLELWNLIWKAYLACPQLKIKWEI
Sbjct: 1  MKSETFKNSKIRKLISIQNKMLSDPNFNDNTRLPYGSLELWNLIWKAYLACPQLKIKWEI 60

Query: 61 CAKLQLKSKAKFLPTQE 78
          CAKLQLKSKAKFLPTQE
Sbjct: 61 CAKLQLKSKAKFLPTQE 77

[Close]
BLAST of CsaV3_1G008510 vs. TrEMBL
Match: tr|A0A0A0LWA7|A0A0A0LWA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046085 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MKSETFKNSKIRKLISIQNKMLSDPNFNDNTRLPYGSLELWNLIWKAYLACPQLKIKWEI 60
          MKSETFKNSKIRKLISIQNKMLSDPNFNDNTRLPYGSLELWNLIWKAYLACPQLKIKWEI
Sbjct: 1  MKSETFKNSKIRKLISIQNKMLSDPNFNDNTRLPYGSLELWNLIWKAYLACPQLKIKWEI 60

Query: 61 CAKLQLKSKAKFLPTQE 78
          CAKLQLKSKAKFLPTQE
Sbjct: 61 CAKLQLKSKAKFLPTQE 77

The following BLAST results are available for this feature:
BLAST of CsaV3_1G008510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64311.11.6e-36100.00hypothetical protein Csa_1G046085 [Cucumis sativus][more]
BLAST of CsaV3_1G008510 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWA7|A0A0A0LWA7_CUCSA1.1e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046085 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G008510.1CsaV3_1G008510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G008510Watermelon (97103) v2cucwmbB000
CsaV3_1G008510Watermelon (97103) v2cucwmbB016
CsaV3_1G008510Watermelon (97103) v2cucwmbB068
CsaV3_1G008510Watermelon (97103) v2cucwmbB056
CsaV3_1G008510Watermelon (97103) v2cucwmbB088
CsaV3_1G008510Watermelon (97103) v2cucwmbB089
CsaV3_1G008510Wax gourdcucwgoB003
CsaV3_1G008510Wax gourdcucwgoB033
CsaV3_1G008510Wax gourdcucwgoB073
CsaV3_1G008510Cucumber (Chinese Long) v3cuccucB002
CsaV3_1G008510Cucumber (Chinese Long) v3cuccucB018
CsaV3_1G008510Cucumber (Chinese Long) v3cuccucB040
CsaV3_1G008510Cucumber (Chinese Long) v3cuccucB042
CsaV3_1G008510Silver-seed gourdcarcucB0396
CsaV3_1G008510Silver-seed gourdcarcucB0529
CsaV3_1G008510Silver-seed gourdcarcucB0655
CsaV3_1G008510Silver-seed gourdcarcucB1048
CsaV3_1G008510Cucumber (Gy14) v2cgybcucB002
CsaV3_1G008510Cucumber (Gy14) v2cgybcucB009
CsaV3_1G008510Cucumber (Gy14) v2cgybcucB102
CsaV3_1G008510Cucumber (Gy14) v2cgybcucB206
CsaV3_1G008510Cucumber (Gy14) v1cgycucB109
CsaV3_1G008510Cucumber (Gy14) v1cgycucB316
CsaV3_1G008510Cucumber (Gy14) v1cgycucB433
CsaV3_1G008510Cucumber (Gy14) v1cgycucB518
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0074
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0121
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0186
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0271
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0323
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0484
CsaV3_1G008510Cucurbita maxima (Rimu)cmacucB0818
CsaV3_1G008510Cucurbita moschata (Rifu)cmocucB0061
CsaV3_1G008510Cucurbita moschata (Rifu)cmocucB0105
CsaV3_1G008510Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G008510Cucurbita moschata (Rifu)cmocucB0260
CsaV3_1G008510Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G008510Cucurbita moschata (Rifu)cmocucB0802
CsaV3_1G008510Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G008510Cucurbita pepo (Zucchini)cpecucB0192
CsaV3_1G008510Cucurbita pepo (Zucchini)cpecucB0435
CsaV3_1G008510Cucurbita pepo (Zucchini)cpecucB0475
CsaV3_1G008510Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G008510Cucurbita pepo (Zucchini)cpecucB0738
CsaV3_1G008510Cucurbita pepo (Zucchini)cpecucB0801
CsaV3_1G008510Wild cucumber (PI 183967)cpicucB001
CsaV3_1G008510Wild cucumber (PI 183967)cpicucB013
CsaV3_1G008510Wild cucumber (PI 183967)cpicucB128
CsaV3_1G008510Wild cucumber (PI 183967)cpicucB258
CsaV3_1G008510Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G008510Bottle gourd (USVL1VR-Ls)cuclsiB028
CsaV3_1G008510Bottle gourd (USVL1VR-Ls)cuclsiB055
CsaV3_1G008510Bottle gourd (USVL1VR-Ls)cuclsiB057
CsaV3_1G008510Bottle gourd (USVL1VR-Ls)cuclsiB075
CsaV3_1G008510Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G008510Melon (DHL92) v3.5.1cucmeB000
CsaV3_1G008510Melon (DHL92) v3.5.1cucmeB002
CsaV3_1G008510Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G008510Melon (DHL92) v3.5.1cucmeB047
CsaV3_1G008510Melon (DHL92) v3.5.1cucmeB070
CsaV3_1G008510Melon (DHL92) v3.6.1cucmedB000
CsaV3_1G008510Melon (DHL92) v3.6.1cucmedB002
CsaV3_1G008510Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G008510Melon (DHL92) v3.6.1cucmedB044
CsaV3_1G008510Melon (DHL92) v3.6.1cucmedB066
CsaV3_1G008510Watermelon (Charleston Gray)cucwcgB000
CsaV3_1G008510Watermelon (Charleston Gray)cucwcgB007
CsaV3_1G008510Watermelon (Charleston Gray)cucwcgB014
CsaV3_1G008510Watermelon (Charleston Gray)cucwcgB067
CsaV3_1G008510Watermelon (Charleston Gray)cucwcgB079
CsaV3_1G008510Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G008510Watermelon (97103) v1cucwmB000
CsaV3_1G008510Watermelon (97103) v1cucwmB008
CsaV3_1G008510Watermelon (97103) v1cucwmB041
CsaV3_1G008510Watermelon (97103) v1cucwmB048
CsaV3_1G008510Watermelon (97103) v1cucwmB096