CsaV3_1G007590 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G007590
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4831046 .. 4831204 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAATGATCGGAGTTGCATTCGGGCGAGGAAACTCATTAAATGCGATGGGCATTTTGATTTCGTCGGCGAGTCCAACAACAACGGCATGCTACGCTTTTCCGACGGTAGCGACAGCTAATGGTGCCGATCTCTGTGAGGTTGAATGGCCGTGA

mRNA sequence

ATGAAAGAAATGATCGGAGTTGCATTCGGGCGAGGAAACTCATTAAATGCGATGGGCATTTTGATTTCGTCGGCGAGTCCAACAACAACGGCATGCTACGCTTTTCCGACGGTAGCGACAGCTAATGGTGCCGATCTCTGTGAGGTTGAATGGCCGTGA

Coding sequence (CDS)

ATGAAAGAAATGATCGGAGTTGCATTCGGGCGAGGAAACTCATTAAATGCGATGGGCATTTTGATTTCGTCGGCGAGTCCAACAACAACGGCATGCTACGCTTTTCCGACGGTAGCGACAGCTAATGGTGCCGATCTCTGTGAGGTTGAATGGCCGTGA

Protein sequence

MKEMIGVAFGRGNSLNAMGILISSASPTTTACYAFPTVATANGADLCEVEWP
BLAST of CsaV3_1G007590 vs. NCBI nr
Match: KGN64221.1 (hypothetical protein Csa_1G043240 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MKEMIGVAFGRGNSLNAMGILISSASPTTTACYAFPTVATANGADLCEVEWP 53
          MKEMIGVAFGRGNSLNAMGILISSASPTTTACYAFPTVATANGADLCEVEWP
Sbjct: 1  MKEMIGVAFGRGNSLNAMGILISSASPTTTACYAFPTVATANGADLCEVEWP 52

BLAST of CsaV3_1G007590 vs. TrEMBL
Match: tr|A0A0A0LW05|A0A0A0LW05_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043240 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MKEMIGVAFGRGNSLNAMGILISSASPTTTACYAFPTVATANGADLCEVEWP 53
          MKEMIGVAFGRGNSLNAMGILISSASPTTTACYAFPTVATANGADLCEVEWP
Sbjct: 1  MKEMIGVAFGRGNSLNAMGILISSASPTTTACYAFPTVATANGADLCEVEWP 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64221.18.5e-21100.00hypothetical protein Csa_1G043240 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LW05|A0A0A0LW05_CUCSA5.7e-21100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043240 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G007590.1CsaV3_1G007590.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..32
score: 5.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None