CsaV3_1G007110 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G007110
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	EH domain-containing protein 1
Location	chr1 : 4509606 .. 4510595 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAATTGGATCGGGTGCGATTGGCCGATTCAGGTACTTTTCTATTATCAATCCGCGTTTCTTCTTCTATTTTGTTCATCGATGATGTTTATCGTTTTGTTTTCTGTTCCATTCTTTCCGTGTAGATGGAGATGGTCGTGTTACTGGAAATGATGCTATACAGTTCTTCTCCATGTCTCATCTTTCTCGCGTCGAGCTCAAACAGGTATCTCATTTGTTTTTCTTTTAGATTATTGAGTTAATAGTTCGATCTAGCTCTGACGCCTCGATGGATAGAGTATTGTGATTTGTCTTAGTTGCGAATATTTTAATTGATGTTAAGTTTAATCTAACTTCGATGTGTTTCGTGGTGAATATCAGTATTCGAAACTTCCTTTATCTGAATGAGAATTCAAGAAACTTGTTTATTTCTTTATTTAGTCAATTATCGTATTTACTCTGATTTGTTTTGTGATCAGAGATTTTCGTTTGGTTTTGTTCTTAAAAAAATTGTGCTTATTGTTTCTCTATCTTTTTTTCGTACTCACGATTGAGAAGTTTTTTAATGGCAAACTTAGGAGTATTTTAACTATATATAGATACACTGGATTTATTGAATTTAGTATATGCCTGTGCTCTCTTTTCCTTTCTTTGTATGACACGGGGTTTACTTATTTGAGTGTATACTATGTATTGGATTCTGTGGTTACATCATTTGCCCTTTTGCCTTTTCTACGATGCCAAGTGAAACTAACGTGATATTTCATATCATGTTTAATGGTTTGGGCTGGTGCAGACTCCAAACGACAGGGATATTTAGGGTTCAACGAGTTCGTTACGGCCATGCAGGTTTTATACTACTTATTTGGATTTTATTACATTAACCAATACCCAGATGTTTTTCTAATTCTAAATATTGTTTTCATTACAACCAGCTAATTTCTTTAGCACAAGCAGGGTATGACCTGGACTCAGATATCCTCAAGAACGCAGGCAAGACATCTTAA

mRNA sequence

ATGTGGAAATTGGATCGGGTGCGATTGGCCGATTCAGATGGAGATGGTCGTGTTACTGGAAATGATGCTATACAGTTCTTCTCCATGTCTCATCTTTCTCGCGTCGAGCTCAAACAGCTAATTTCTTTAGCACAAGCAGGGTATGACCTGGACTCAGATATCCTCAAGAACGCAGGCAAGACATCTTAA

Coding sequence (CDS)

ATGTGGAAATTGGATCGGGTGCGATTGGCCGATTCAGATGGAGATGGTCGTGTTACTGGAAATGATGCTATACAGTTCTTCTCCATGTCTCATCTTTCTCGCGTCGAGCTCAAACAGCTAATTTCTTTAGCACAAGCAGGGTATGACCTGGACTCAGATATCCTCAAGAACGCAGGCAAGACATCTTAA

Protein sequence

MWKLDRVRLADSDGDGRVTGNDAIQFFSMSHLSRVELKQLISLAQAGYDLDSDILKNAGKTS

Homology

[Close]

BLAST of CsaV3_1G007110 vs. NCBI nr
Match: XP_004145425.2 (PREDICTED: EH domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 48/73 (65.75%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQ 59
          LADSDGDGRVTGNDAIQFFSMSHLSR ELK                       QLISLAQ
Sbjct: 25 LADSDGDGRVTGNDAIQFFSMSHLSRAELKQVWAVADSKRQGYLGFNEFVTAMQLISLAQ 84

[Close]

BLAST of CsaV3_1G007110 vs. NCBI nr
Match: XP_008458980.1 (PREDICTED: EH domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-13
Identity = 48/73 (65.75%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQ 59
          LADSDGDGRVTGNDAIQFFSMSHLSR ELK                       QLISLAQ
Sbjct: 25 LADSDGDGRVTGNDAIQFFSMSHLSRGELKQVWAVADSKRQGYLGFNEFVTAMQLISLAQ 84

[Close]

BLAST of CsaV3_1G007110 vs. NCBI nr
Match: XP_022927579.1 (EH domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 47/73 (64.38%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQ 59
          LADSDGDGRVTGNDAIQFFS SHLSR ELK                       QLISLAQ
Sbjct: 25 LADSDGDGRVTGNDAIQFFSTSHLSRAELKLVWAIADSKRQGYLGFNEFVTAMQLISLAQ 84

[Close]

BLAST of CsaV3_1G007110 vs. NCBI nr
Match: XP_022724380.1 (EH domain-containing protein 2-like isoform X5 [Durio zibethinus])

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 5  DRVRLADSDGDGRVTGNDAIQFFSMSHLSRVELKQLISLAQAGYDLDSDILKNA 59
          D   +ADSDGDGRVTGNDA +FF+MS LSR ELKQL+SLAQ G+++ SD+LKN+
Sbjct: 21 DWFNIADSDGDGRVTGNDATKFFAMSKLSRQELKQLVSLAQTGHEITSDVLKNS 74

[Close]

BLAST of CsaV3_1G007110 vs. NCBI nr
Match: XP_023520365.1 (EH domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 46/73 (63.01%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQ 59
          LADSDGDGRVTGNDAIQFFS SHLSR ELK                       QLISLAQ
Sbjct: 25 LADSDGDGRVTGNDAIQFFSTSHLSRAELKQVWAIADSKRQGYLGFNEFVTAMQLISLAQ 84

[Close]

BLAST of CsaV3_1G007110 vs. TAIR10
Match: AT4G05520.1 (EPS15 homology domain 2)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-10
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELKQ-----------------------LISLAQ 59
          +ADSDGDGRV+GNDA +FF+MS LSR ELKQ                       L+SLAQ
Sbjct: 26 IADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSEFITAMKLVSLAQ 85

[Close]

BLAST of CsaV3_1G007110 vs. TAIR10
Match: AT3G20290.1 (EPS15 homology domain 1)

HSP 1 Score: 56.6 bits (135), Expect = 6.4e-09
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 10 ADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQA 56
          +DSDGDGR+TGNDAI+FF+MS+L R ELK                       QL+SLAQ 
Sbjct: 26 SDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQLVSLAQT 85

[Close]

BLAST of CsaV3_1G007110 vs. Swiss-Prot
Match: sp|B3LF48|EHD2_ARATH (EH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EHD2 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-09
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELKQ-----------------------LISLAQ 59
          +ADSDGDGRV+GNDA +FF+MS LSR ELKQ                       L+SLAQ
Sbjct: 26 IADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSEFITAMKLVSLAQ 85

[Close]

BLAST of CsaV3_1G007110 vs. Swiss-Prot
Match: sp|Q94CF0|EHD1_ARATH (EH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=EHD1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 10 ADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQA 56
          +DSDGDGR+TGNDAI+FF+MS+L R ELK                       QL+SLAQ 
Sbjct: 26 SDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQLVSLAQT 85

[Close]

BLAST of CsaV3_1G007110 vs. TrEMBL
Match: tr|A0A1S3C8M9|A0A1S3C8M9_CUCME (EH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103498230 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 48/73 (65.75%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQ 59
          LADSDGDGRVTGNDAIQFFSMSHLSR ELK                       QLISLAQ
Sbjct: 25 LADSDGDGRVTGNDAIQFFSMSHLSRGELKQVWAVADSKRQGYLGFNEFVTAMQLISLAQ 84

[Close]

BLAST of CsaV3_1G007110 vs. TrEMBL
Match: tr|A0A2N9EN23|A0A2N9EN23_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3973 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 10 ADSDGDGRVTGNDAIQFFSMSHLSRVELKQLISLAQAGYDLDSDILKNAGK 61
          ADSDGDGR+TGNDA +FF++S LSR ELKQLISLAQAG++L  DI+K AGK
Sbjct: 26 ADSDGDGRITGNDAAKFFAISKLSRPELKQLISLAQAGHELTQDIIKTAGK 76

[Close]

BLAST of CsaV3_1G007110 vs. TrEMBL
Match: tr|A0A218Y1Z6|A0A218Y1Z6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr011591 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 10 ADSDGDGRVTGNDAIQFFSMSHLSRVELKQLISLAQAGYDLDSDIL 56
          ADSDGDGRVTGNDA++FF+ S+LSR +LKQ+ISLAQAG+ +  D+L
Sbjct: 26 ADSDGDGRVTGNDALKFFTRSNLSRQDLKQVISLAQAGHPITQDLL 71

[Close]

BLAST of CsaV3_1G007110 vs. TrEMBL
Match: tr|G7JKG5|G7JKG5_MEDTR (Calcium-binding EF hand protein OS=Medicago truncatula OX=3880 GN=11440107 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 9  LADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLISLAQ 57
          LADSDGDGR++GNDAI+FF++S+LSR +LK                       QLIS+ Q
Sbjct: 25 LADSDGDGRISGNDAIKFFALSNLSRPQLKQVWAIADTKRQGFLGFEEFVTAMQLISVGQ 84

[Close]

BLAST of CsaV3_1G007110 vs. TrEMBL
Match: tr|A0A061GHG5|A0A061GHG5_THECC (EPS15 domain 2 isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_030332 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 5  DRVRLADSDGDGRVTGNDAIQFFSMSHLSRVELK-----------------------QLI 59
          D   +ADSDGDGRVTGNDA +FFSMS LSR ELK                       QL+
Sbjct: 21 DWFNVADSDGDGRVTGNDATKFFSMSKLSRQELKQIWAIADSKRQGFLGLTEFIVAMQLV 80

The following BLAST results are available for this feature:

BLAST of CsaV3_1G007110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145425.2	2.1e-13	65.75	PREDICTED: EH domain-containing protein 1 [Cucumis sativus]	[more]
XP_008458980.1	4.6e-13	65.75	PREDICTED: EH domain-containing protein 1 [Cucumis melo]	[more]
XP_022927579.1	1.0e-12	64.38	EH domain-containing protein 1-like [Cucurbita moschata]	[more]
XP_022724380.1	3.0e-12	68.52	EH domain-containing protein 2-like isoform X5 [Durio zibethinus]	[more]
XP_023520365.1	3.9e-12	63.01	EH domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G007110 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G05520.1	2.0e-10	46.58	EPS15 homology domain 2	[more]
AT3G20290.1	6.4e-09	43.48	EPS15 homology domain 1	[more]

BLAST of CsaV3_1G007110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B3LF48\|EHD2_ARATH	3.6e-09	46.58	EH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EHD2 PE=1 SV=1	[more]
sp\|Q94CF0\|EHD1_ARATH	1.1e-07	43.48	EH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=EHD1 PE=1 SV=1	[more]

BLAST of CsaV3_1G007110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8M9\|A0A1S3C8M9_CUCME	3.0e-13	65.75	EH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103498230 PE=3 SV=1	[more]
tr\|A0A2N9EN23\|A0A2N9EN23_FAGSY	1.5e-12	74.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3973 PE=3 SV=1	[more]
tr\|A0A218Y1Z6\|A0A218Y1Z6_PUNGR	2.6e-09	69.57	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr011591 PE=3 SV=1	[more]
tr\|G7JKG5\|G7JKG5_MEDTR	1.3e-08	52.11	Calcium-binding EF hand protein OS=Medicago truncatula OX=3880 GN=11440107 PE=3 ...	[more]
tr\|A0A061GHG5\|A0A061GHG5_THECC	2.2e-08	50.65	EPS15 domain 2 isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_030332 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043167	ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G007110.1	CsaV3_1G007110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 8..58 e-value: 8.9E-7 score: 30.4
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 8..45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G007110	CsGy1G007010	Cucumber (Gy14) v2	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G007110	Cucumber (Chinese Long) v3	cuccucB000
CsaV3_1G007110	Silver-seed gourd	carcucB0418
CsaV3_1G007110	Silver-seed gourd	carcucB0529
CsaV3_1G007110	Silver-seed gourd	carcucB0630
CsaV3_1G007110	Silver-seed gourd	carcucB0825
CsaV3_1G007110	Cucumber (Gy14) v2	cgybcucB004
CsaV3_1G007110	Cucumber (Gy14) v1	cgycucB145
CsaV3_1G007110	Cucumber (Gy14) v1	cgycucB163
CsaV3_1G007110	Cucurbita maxima (Rimu)	cmacucB0065
CsaV3_1G007110	Cucurbita maxima (Rimu)	cmacucB0102
CsaV3_1G007110	Cucurbita maxima (Rimu)	cmacucB0248
CsaV3_1G007110	Cucurbita maxima (Rimu)	cmacucB0464
CsaV3_1G007110	Cucurbita moschata (Rifu)	cmocucB0052
CsaV3_1G007110	Cucurbita moschata (Rifu)	cmocucB0092
CsaV3_1G007110	Cucurbita moschata (Rifu)	cmocucB0234
CsaV3_1G007110	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G007110	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G007110	Cucurbita pepo (Zucchini)	cpecucB0449
CsaV3_1G007110	Cucurbita pepo (Zucchini)	cpecucB0623
CsaV3_1G007110	Cucurbita pepo (Zucchini)	cpecucB0816
CsaV3_1G007110	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G007110	Wild cucumber (PI 183967)	cpicucB004
CsaV3_1G007110	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G007110	Bottle gourd (USVL1VR-Ls)	cuclsiB083
CsaV3_1G007110	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G007110	Melon (DHL92) v3.5.1	cucmeB056
CsaV3_1G007110	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G007110	Melon (DHL92) v3.6.1	cucmedB053
CsaV3_1G007110	Watermelon (Charleston Gray)	cucwcgB063
CsaV3_1G007110	Watermelon (Charleston Gray)	cucwcgB090
CsaV3_1G007110	Watermelon (97103) v1	cucwmB070
CsaV3_1G007110	Watermelon (97103) v1	cucwmB107
CsaV3_1G007110	Watermelon (97103) v2	cucwmbB054
CsaV3_1G007110	Watermelon (97103) v2	cucwmbB078
CsaV3_1G007110	Wax gourd	cucwgoB031
CsaV3_1G007110	Wax gourd	cucwgoB101