CsaV3_1G006810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4358086 .. 4358403 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTCCATGATATACATGAAGTTAAGACATTATGTTAGGTATGAAGAAATAGAGGGCTTAAAATTCAAACGTAAAACGAATAGAATTAATCTGTTGGAGAAGCCAGCAAGTAGGACGAAAGAAGAGTTGGATGTTGAATATAAGGATCTGTATACGATGGTATGTGAGACATGTTGAGAAAATCGTGGAAAGTGTGGAAAAAATACAACGCACCTATTTTACTGCATTTGTGAAACCCAAGATCAGCATTGTCCTCACGGCTTGCTCCTCCACATGGTATGTCCATTTCTTTCTTCCAATATTCCACATCAAAGTTGA

mRNA sequence

GATTCCATGATATACATGAAGTTAAGACATTATGTTAGGTATGAAGAAATAGAGGGCTTAAAATTCAAACGTAAAACGAATAGAATTAATCTGTTGGAGAAGCCAGCAAGTAGGACGAAAGAAGAGTTGGATGTTGAATATAAGGATCTGTATACGATGGTATGTGAGACATGTTGA

Coding sequence (CDS)

GATTCCATGATATACATGAAGTTAAGACATTATGTTAGGTATGAAGAAATAGAGGGCTTAAAATTCAAACGTAAAACGAATAGAATTAATCTGTTGGAGAAGCCAGCAAGTAGGACGAAAGAAGAGTTGGATGTTGAATATAAGGATCTGTATACGATGGTATGTGAGACATGTTGA

Protein sequence

DSMIYMKLRHYVRYEEIEGLKFKRKTNRINLLEKPASRTKEELDVEYKDLYTMVCETC
Homology
[Close]
BLAST of CsaV3_1G006810 vs. NCBI nr
Match: XP_016899342.1 (PREDICTED: uncharacterized protein LOC107990466 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 1   DSMIYMKLRHYVRYEEIEGLKFKRKTNRINLLEKPASRTKEELDVEYKDLYTMVCETC 59
           DSMI M L HY+RYEEIE L FKRKTN  N+LEKP SRTK+ELDVEY+DLY +VCETC
Sbjct: 108 DSMIDMTLGHYIRYEEIESLTFKRKTNGKNMLEKPESRTKQELDVEYEDLYAIVCETC 165

[Close]
BLAST of CsaV3_1G006810 vs. TrEMBL
Match: tr|A0A1S4DTL4|A0A1S4DTL4_CUCME (uncharacterized protein LOC107990466 OS=Cucumis melo OX=3656 GN=LOC107990466 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-16
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 1   DSMIYMKLRHYVRYEEIEGLKFKRKTNRINLLEKPASRTKEELDVEYKDLYTMVCETC 59
           DSMI M L HY+RYEEIE L FKRKTN  N+LEKP SRTK+ELDVEY+DLY +VCETC
Sbjct: 108 DSMIDMTLGHYIRYEEIESLTFKRKTNGKNMLEKPESRTKQELDVEYEDLYAIVCETC 165

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899342.14.1e-1675.86PREDICTED: uncharacterized protein LOC107990466 [Cucumis melo][more]
BLAST of CsaV3_1G006810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DTL4|A0A1S4DTL4_CUCME2.7e-1675.86uncharacterized protein LOC107990466 OS=Cucumis melo OX=3656 GN=LOC107990466 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006810.1CsaV3_1G006810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G006810Cla97C04G077800Watermelon (97103) v2cucwmbB054
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006810Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006810Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G006810Silver-seed gourdcarcucB0418
CsaV3_1G006810Silver-seed gourdcarcucB0548
CsaV3_1G006810Silver-seed gourdcarcucB0630
CsaV3_1G006810Silver-seed gourdcarcucB0825
CsaV3_1G006810Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006810Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006810Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006810Cucumber (Gy14) v1cgycucB145
CsaV3_1G006810Cucumber (Gy14) v1cgycucB163
CsaV3_1G006810Cucumber (Gy14) v1cgycucB434
CsaV3_1G006810Cucurbita maxima (Rimu)cmacucB0065
CsaV3_1G006810Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006810Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006810Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006810Cucurbita maxima (Rimu)cmacucB0485
CsaV3_1G006810Cucurbita moschata (Rifu)cmocucB0052
CsaV3_1G006810Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006810Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006810Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006810Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006810Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006810Cucurbita pepo (Zucchini)cpecucB0449
CsaV3_1G006810Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006810Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006810Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006810Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006810Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006810Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006810Bottle gourd (USVL1VR-Ls)cuclsiB063
CsaV3_1G006810Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006810Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006810Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006810Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006810Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006810Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006810Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006810Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006810Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006810Watermelon (97103) v1cucwmB070
CsaV3_1G006810Watermelon (97103) v1cucwmB107
CsaV3_1G006810Watermelon (97103) v2cucwmbB078
CsaV3_1G006810Wax gourdcucwgoB031