CsaV3_1G006790 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G006790
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 isoform X1
Locationchr1 : 4352428 .. 4352779 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAGAAATTGAGAGAGCAGAGTACCAACTCCTCGGTCA

mRNA sequence

ATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

Coding sequence (CDS)

ATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

Protein sequence

MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSFKCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP
BLAST of CsaV3_1G006790 vs. NCBI nr
Match: KGN64135.1 (hypothetical protein Csa_1G042470 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 8.1e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 106
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 105

BLAST of CsaV3_1G006790 vs. NCBI nr
Match: XP_016899459.1 (PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 isoform X1 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 18 LSPRSFPF-LLSQLYLALILLILLFSAPVNSSVYDEWFFNC-NSFKCDPFVTKEFPFWRY 77
          ++PRSF F L    + + + +ILL S+P  SS+YDEWF NC +SFKCD F+ K FP WRY
Sbjct: 3  INPRSFLFSLFPHFFPSFLFIILLLSSPAFSSLYDEWFLNCQDSFKCDGFLDKGFPLWRY 62

Query: 78 NGTETCYRVGYSESMKLTCDGL 98
          NGTE C    Y ESM++ CDG+
Sbjct: 63 NGTEFC--GAYHESMRIKCDGI 82

BLAST of CsaV3_1G006790 vs. NCBI nr
Match: XP_022137292.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111008789 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-14
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNC-NS 60
           MSSSP + QN  F S +++ RSFPF L  L LA +LLILL S P  SS Y+EWF NC +S
Sbjct: 709 MSSSP-ILQNSDFSSLEMNSRSFPFPLLHLSLASMLLILLISLPA-SSAYEEWFLNCKDS 768

Query: 61  FKCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG 97
             C+   T EFP WRY+GT +C   G  E+MKL C+G
Sbjct: 769 LNCESVGTIEFPLWRYDGTGSC---GRPEAMKLNCEG 800

BLAST of CsaV3_1G006790 vs. NCBI nr
Match: XP_022137110.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 isoform X2 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 7.2e-11
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 0

Query: 18 LSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNS-FKCDPFVTKEFPFWRYN 77
          ++ R FPF    L LA +LL+LL S+P +S+ Y EWF NCN   KC+   T EFP WR N
Sbjct: 1  MNSRLFPFRPLHLSLAFMLLMLLNSSPASSAFYGEWFLNCNDPLKCESIGTLEFPLWRNN 60

Query: 78 GTETCYRVGYSESMKLTCDG 97
           T TC    Y E+MK+ CDG
Sbjct: 61 RTGTC---SYPETMKVNCDG 77

BLAST of CsaV3_1G006790 vs. NCBI nr
Match: XP_022137109.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 isoform X1 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 7.2e-11
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 0

Query: 18 LSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNS-FKCDPFVTKEFPFWRYN 77
          ++ R FPF    L LA +LL+LL S+P +S+ Y EWF NCN   KC+   T EFP WR N
Sbjct: 1  MNSRLFPFRPLHLSLAFMLLMLLNSSPASSAFYGEWFLNCNDPLKCESIGTLEFPLWRNN 60

Query: 78 GTETCYRVGYSESMKLTCDG 97
           T TC    Y E+MK+ CDG
Sbjct: 61 RTGTC---SYPETMKVNCDG 77

BLAST of CsaV3_1G006790 vs. TrEMBL
Match: tr|A0A0A0LQE7|A0A0A0LQE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042470 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.4e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 106
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 105

BLAST of CsaV3_1G006790 vs. TrEMBL
Match: tr|A0A1S4DTZ4|A0A1S4DTZ4_CUCME (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485709 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.3e-15
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 18 LSPRSFPF-LLSQLYLALILLILLFSAPVNSSVYDEWFFNC-NSFKCDPFVTKEFPFWRY 77
          ++PRSF F L    + + + +ILL S+P  SS+YDEWF NC +SFKCD F+ K FP WRY
Sbjct: 3  INPRSFLFSLFPHFFPSFLFIILLLSSPAFSSLYDEWFLNCQDSFKCDGFLDKGFPLWRY 62

Query: 78 NGTETCYRVGYSESMKLTCDGL 98
          NGTE C    Y ESM++ CDG+
Sbjct: 63 NGTEFC--GAYHESMRIKCDGI 82

BLAST of CsaV3_1G006790 vs. TrEMBL
Match: tr|A0A0A0LQ35|A0A0A0LQ35_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404850 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0

Query: 32 LALILLILLFSAPVNSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSES 91
          L L + +LL S   +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E 
Sbjct: 10 LFLFITLLLTSPASSSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEP 69

Query: 92 MKLTCD 96
          MKL CD
Sbjct: 70 MKLNCD 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64135.18.1e-55100.00hypothetical protein Csa_1G042470 [Cucumis sativus][more]
XP_016899459.11.4e-1453.66PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-li... [more]
XP_022137292.13.1e-1453.61LOW QUALITY PROTEIN: uncharacterized protein LOC111008789 [Momordica charantia][more]
XP_022137110.17.2e-1150.00LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 isof... [more]
XP_022137109.17.2e-1150.00LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 isof... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LQE7|A0A0A0LQE7_CUCSA5.4e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042470 PE=4 SV=1[more]
tr|A0A1S4DTZ4|A0A1S4DTZ4_CUCME9.3e-1553.66LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 isof... [more]
tr|A0A0A0LQ35|A0A0A0LQ35_CUCSA1.4e-0751.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404850 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006790.1CsaV3_1G006790.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006790Silver-seed gourdcarcucB0418
CsaV3_1G006790Silver-seed gourdcarcucB0548
CsaV3_1G006790Silver-seed gourdcarcucB0630
CsaV3_1G006790Silver-seed gourdcarcucB0825
CsaV3_1G006790Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006790Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006790Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006790Cucumber (Gy14) v1cgycucB145
CsaV3_1G006790Cucumber (Gy14) v1cgycucB163
CsaV3_1G006790Cucumber (Gy14) v1cgycucB434
CsaV3_1G006790Cucurbita maxima (Rimu)cmacucB0065
CsaV3_1G006790Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006790Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006790Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006790Cucurbita maxima (Rimu)cmacucB0485
CsaV3_1G006790Cucurbita moschata (Rifu)cmocucB0052
CsaV3_1G006790Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006790Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006790Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006790Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006790Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G006790Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006790Cucurbita pepo (Zucchini)cpecucB0449
CsaV3_1G006790Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006790Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006790Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006790Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006790Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006790Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006790Bottle gourd (USVL1VR-Ls)cuclsiB063
CsaV3_1G006790Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006790Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006790Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006790Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006790Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006790Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006790Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006790Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006790Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G006790Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006790Watermelon (97103) v1cucwmB043
CsaV3_1G006790Watermelon (97103) v1cucwmB070
CsaV3_1G006790Watermelon (97103) v1cucwmB107
CsaV3_1G006790Watermelon (97103) v2cucwmbB054
CsaV3_1G006790Watermelon (97103) v2cucwmbB078
CsaV3_1G006790Wax gourdcucwgoB014
CsaV3_1G006790Wax gourdcucwgoB031
CsaV3_1G006790Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006790Cucumber (Chinese Long) v3cuccucB034