CsaV3_1G006450 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GGTTCGACTATCTGAAGGGTTCTAACTTTCTAGGGTTTAAGCCATGCGCTAAACTTCTGAGTTTCTCTACAGATTGCCAATTACGAAGACGATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGTACGTTGGATGATGTATAGGTGCTTTGAGACTTTCGATTCTCGATGTTTTTTTGCTTACATTTTCATCTTATTGACATTTCGTGTTTGCTTGAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGGTAAGCATTTCAGTCTTGATCATTTACCTGAGGTACATGGAGATAATATCATAGAAATTTATTTATATTCTGCCATCAATTCTTAACAACGAGCTTATGTTTGATTAGTATAGTGATGGGAAGCTGTACTCGATTAATTTGAATTCCAAACTGTGCCCGTTATTAACTTTGTAGTTATCGTTTTTTTCTGGTTCATGTTACTCCGTTTCTCACAAAAGATATTGTTGTAGTCTTAGTTTCGCTGTTCTTTGTTGCAGCTTTATTCTTACAGTGTAAATTTGTCCTTGTCAGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGTACATCACTTACCCCTTCATTCTTTAAAGCGGTCTTTTGTGGTTTTTTTAATCATATGTTCTTTCAAACGGTTTCTTTTACAAAAGAAAATGGTACAACCCTTGTTATGTTTTAGTACCCTGCTTCTATGAATATAGAGTTCCTCATGTATTATGGCTACTTAATTAAACTACATACCATTTGTGTCATCTTTAATAAAAAAGAATTCGGCAAGTTTTGTTCTGAACTGTGACGAAGGTACAGCCTCTTTACGATGTGAATGTCCTTTCTTGGACGTGATATGTATTTTAACTAAAAAAAGAAAAGCAAATTTATTTTCTTCTGTAGGCTGAAAAACCTATATAGATTCTGACCGACTGGTATTTGAATTATAATGTTGGGTCTATGGTTTTTCCATTTGTTTTTTCATGGCCTGATTCTTTGTGAATCGGAGGAATTATAAAGAATTTGATTGCTTTTGTGCTGACTTGACATTCATGCATGCTGAAACAAATGGCCCTAGGATCACCACATATGACCTCCGTTGATAAAGTTTGGTTGTTATGTAGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAAGAGACGTTTGCAGTTTTGTCATCTGAAGGTTTGAATCACCCACTTCTCTCTGTAAATGCTGTTATTTCACTTCACAGACTTGCAATAAGACATTCAGAAAAGGATCTACTGCATGGCCTAGTGATGATTCCCTTCCCCCCCCCCCCCCCCCACCCTCTGTCGAGCGACAAATGTCTTTGATATTTATACGATTTAAATGAATTTGATTGAGAGAGAATTGAAATCCACTTCTTCATTGTTTTTCAACCGTGTACACGACTTGTTGTTTCTTTTGAGATGTTTATTTTGTGCTTGCATGTTCAGTTGCAGGGGTCATGGGCATAGTTATGGTTAGACAGAGTGAATGCTGTCTTTTTGTGAAACAAGCATCAGTACTTTCAATGCGCAAGACAATCTTTGATGGGTTATTAGAGGCACATGTGTGAGCAATGGAGCCACATAATGTATGAGTATGAGTTGGTAGATTGAAAATTGAAATTCAAATGCCTGAATCTGATAACTGATAACTTAAAATAAAAAATGCCATAACTGGGAATGATTGAGTTTCGTACATTGTGATGCTATGTATTTTCAATAATAGACAATGAATGAAATTGGCATTTTCTAGAAAATAGATACTAAAAATATGACAGAAGATTGTGTTTGGTTCGTAATGGTGCAGAAAGGGATAATAAGGTGACGGATAATCTACAAAAAGCAACGTGAAGGTGACTGAGATGATTGCTGGAGGGAAACTTGCTTCTCATCAAACTGCTTTTGGTGTAGAAAAATTGTTCCGAACGTTAGAAGAAAAGTTAATGTATTTGAATGTCTTTTTCTATAATTTAACCTAAATTAAACAATTGAAAGGTGTCACTTAACATTTCTCGTGATCAAATTGGTGATGTGTTAAAATTATTGCTCCGAAT ATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAA ATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAA MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDSNSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY
BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_011650431.1 (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >KGN64102.1 hypothetical protein Csa_1G042140 [Cucumis sativus]) HSP 1 Score: 463.8 bits (1192), Expect = 3.6e-127 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_022923669.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP_022923670.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP_022923671.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 373.2 bits (957), Expect = 6.3e-100 Identity = 194/234 (82.91%), Postives = 210/234 (89.74%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_023519718.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519719.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519720.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 349.4 bits (895), Expect = 9.8e-93 Identity = 182/234 (77.78%), Postives = 197/234 (84.19%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_023000724.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000725.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000726.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima]) HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92 Identity = 182/234 (77.78%), Postives = 196/234 (83.76%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_008455960.1 (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo]) HSP 1 Score: 337.8 bits (865), Expect = 2.9e-89 Identity = 180/234 (76.92%), Postives = 183/234 (78.21%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. TAIR10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 261.2 bits (666), Expect = 6.3e-70 Identity = 142/232 (61.21%), Postives = 173/232 (74.57%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. TAIR10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein) HSP 1 Score: 103.2 bits (256), Expect = 2.2e-22 Identity = 56/171 (32.75%), Postives = 98/171 (57.31%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. Swiss-Prot
Match: sp|Q84J78|SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 4.0e-21 Identity = 56/171 (32.75%), Postives = 98/171 (57.31%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. Swiss-Prot
Match: sp|P57610|SSB_BUCAI (Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=ssb PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.2e-10 Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. Swiss-Prot
Match: sp|Q8D254|SSB_WIGBR (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX=36870 GN=ssb PE=3 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09 Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. Swiss-Prot
Match: sp|Q8K933|SSB_BUCAP (Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=ssb PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09 Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. Swiss-Prot
Match: sp|Q8DCJ0|SSB_VIBVU (Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=ssb PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.7e-09 Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. TrEMBL
Match: tr|A0A0A0LTL6|A0A0A0LTL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 2.4e-127 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. TrEMBL
Match: tr|A0A1S3C3D2|A0A1S3C3D2_CUCME (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 1.9e-89 Identity = 180/234 (76.92%), Postives = 183/234 (78.21%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. TrEMBL
Match: tr|A0A2I4G8B9|A0A2I4G8B9_9ROSI (single-stranded DNA-binding protein, mitochondrial OS=Juglans regia OX=51240 GN=LOC109005592 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 2.4e-71 Identity = 150/233 (64.38%), Postives = 175/233 (75.11%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. TrEMBL
Match: tr|A0A2R6QI78|A0A2R6QI78_ACTCH (Single-stranded DNA-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18642 PE=4 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 1.5e-70 Identity = 155/236 (65.68%), Postives = 174/236 (73.73%), Query Frame = 0
BLAST of CsaV3_1G006450 vs. TrEMBL
Match: tr|V4VMU2|V4VMU2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022157mg PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 6.5e-69 Identity = 146/234 (62.39%), Postives = 171/234 (73.08%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |