CsaV3_1G006440 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTACACATTGCTTATCCACAAAATCTTCTTCCCCAAAACACTTGAAATTCACAGTGAATGAAAATCAACAAACCCAAAATCAACACACTCCAAATCAGGACATGTTGCGAACCCCCAAATTTCTTCATTCCCCAAACCTTTCTTCTCAAACCCAAACCCAAACCCAAACCCAAAACATCCCCACTTCTTCAAAATTTCCATTCATCAAACAATGTTGCAAAATCTCCCGCCGGAATCTCACCATTGGAACCAATTCCCTCTTACTTCTTCTCTTTAACTCTCAAATTCAAGACCCATTTTTAATGTCCTCCAAAGCAGAGGTTGAAGAAGAAGAATTACAGAGTCCTAAAAATGATGACTTTCTTTGCACTGGAAAGATCCCTACGAAACGTGCATTTCTTGATATCTCCATTGATGGAGTTCCTGCTGGTCGCATTATCATTGGCCTTTATGGCAATGATTCCCCAGCAGGAGTTGCAAGGTTTAGCAATCTTGTAAGCGGAGCTGCTGGCATTTCTTATAGAAGAAAAGACTTTGTAAAGATCACTTCAAATTATGTTCAACATAGTGGAGTTAGATCTTATGGTGTGGATTTTGAGCTTGCAAAGAGGAATGGGAATGAATTAGTATCTGAAACTCTTAAGGATGAATGGGAGAGAGCGAATGAGAAATGTTCTGGGACTAAGAATTTGGCTTCGACTGTGGGGATCATTGTGAGAGACCCTTTAAAACCACCTCCTAAGTTGAAGTTGGTAGCTAGGAAAGGGAAGCTGGAGGTTGATCAGGAACAGGTCGGTACCGAACCGAATGGGACGGAGTTCACGATATCGGTTAAGGATTCACCAGAGCTTGATGATTCAGCTTTGGTGATTGGAATTGTTTTGGATGGAATGGAAGTTGTGGAGAAGATTGCACAAGTGAAGACTGTTAAAGATAATACTACTTCTCCTTATTTCAGGTAAAGTTTTAGTTTCATATTTCTCTTTTATTTTATACTTTGATGAACACATCAAAAGAAAACCTTTTTCAATCATGTTTGGAACAAACACTTATTAGATTATTAAAGATTGCGTTACTTTTTAAAGTTTAAGGTTTAGATTTCTAAACTTGACATTGACGTTTGGATTTGATGAGCAGAGTCGCAAAGATAATAGGCGATAAAAGAGCTGTTGTTGCAGAAAGAGGGTTCAACCGTCCTTATTCTAAAGTGATTGTCACAAACTGTGGGTTGCTAGAGGAATGATTAGTCTTTGTCCAAAATAAATACTTGTACGAGTTGAGCTATGCGTACTTATGCTTGTGCTTATGTTGGCTACAATAACTCGATTGTGCTTCCAGTTTTGTTTGTCATTTTTTCAATTGAATTATTTAAATGTAACTATATTCATAATGAGGTATTTTGCTTCTATAAATTAATTTGTACATTCAATCTCTCACCTTATGTTAATTTTCATTTCATTCCACATAACATGATTAATGAATTTAGAACCATGGAATATGAAAATTAGGTAATGGCCACCATCGTCATCTTAGTACAACAAATGTAGAAGTACAAAAATATGAATAGAAGGGGAATGTGTGCATGTCAATTACCATTTAGTTATAATCAGATTGGTAATACTCAAAATCGTGACCTTACAAATTAATGACTATGTTTCGATAACAATCTAAATTAATAGCCCCGACCACACTCGTCAATCTTAACCTCAAACTAAGTTCCAAAAATTGCAAGCTACCAATAGAGGCCGAGTCAAAATTACTTTAGTATTACAAAACCCCATAATAACTATTTTGAGAACAAATAGATAATGATATGACAACATATGTATTCATTTGAGAATTTACTCAATAGGGAACGGCATGACATGAAAAACCCTTCTTCAAAGGGTGTGTATCTCATAATACCTTAGAAGAGGCAGAAACTCAATCCTGGAAGCTCTGTCAGGTTAATATGTAACTGAAAGCAGTGTCTAGTGCTTGGTTCTTTCGTTAGAAACTAGACTGCTTTTCAATTTCTTCGCAGAAGACGTGAATAGATTTCGAACCGATGTAACGGGGTCATTGACCTGGAAAAGAAAACACAATTTTCAGTGTGGATTCACTTGAGAAAGAAAGTCTCCTGTGCGTGGCACAGAACAGGAAAACAACAATGGGGGATTTAAGAGCAGGAGGTTGAAAATCCAAGAACAGAATATATGGATAAATCATATCCCATAGAATGAGAACTACTGATCCAAACATTATCAATGAATGCAATGGATTAACTACTTAGGAACCAGTTTACTGAATTTGTTCCAAAACAACTTCGATGGTTTATTCAAAATTAGGTTACCATTTATCACGGCCAGAATGGTATTGCAAAAGACCAATATACCGTGCCATGCCACTACTATTCTAGCATTAAAATATTAATGGAGTGAACATCTACATTGCTTGACTACTGGACGTCCTTACGTACCTTAATGAGGGACGCTGATGGAGAGTTCTTAGGTGAATGTGGTGAAGAGCCTTTTTCACGCTGTAGAGCAGTTAGGGTTTGTTTCCATCCAGGTGCGACATTTCCTGTGGCAATCCACGGGCAAAAGTATCTGTGCTGCCTGATTGGATCGAACTCTACACCCTTGGAATAATCCTCTGCAAGGAATAAGGTAAAAATAATGAAATATGATTCATCATATAATTTAAATTTATCATTTAAAAATAATGAATTGGGAAGGATAACAGAGAAGATACAAACTTGGCAGGAAAAAAAAAAACACATGCCGGGTTGATTCTTTTAACTGACTTGTTCTTTAACCAGCTGCTAGGATAGTTTATGATACATTATACAGAATTCTTATTCAATTAATCTAACATTTCTACAGCAAATAAGCCAACTATCGTTCAGAAAGCTTAATATACTTGCTCACAGACAACTTGCCACTCCATTTATTCCAACACAAATTTTCATGTAAACAATTGAACTTTAATAATTATTGCACTTAGATATGTCAATACCACTGAACTAAAGCATGAAGCCACAGAATATCTTAGGGGCTGCCTTACCTAAGGCTATGATAACTAGTGAATCTATAAATATGCTGCACCATTCGTGGAAAGAGAAGGATTAAGAGGATTTGATAAATGGTACCTCCACCATGGGCAAGATGCATGCTGTTCATTGAGGTATGCACTTTGTCATTGGAGCCACCTCCTTCACGGGCCTGGTTTTCTAAAGTGGTGTGGTTATCAGAACCAAGTTTGTCTTTCATTGATTCTTCCACACCAGCAATATCGGTACTTGTATCATCTTCAAGGCGTGAAGATTTGCATGAGGTCATCTGTGAGTCGGCCAATGAAATCTCTTTGCTATTTGAATTATCACATTGGTCAGAGACATCAGAAGGCAACTCCTTTTCACTGCATTCAGTACTTGTGATCATAGCAGCATCTGTTGACGTCAAAGGATTTTCGGCTGGAGAAGTTAGGGGATGGAGATCTGCTACTTTATTACCAGAATCCGACTGTATTGAATTCTCAGCATTCTCCGACACTTCAATTTTCTGCGCAGGAACACACTCTGTGCTCTTTACTTTAGTTTCTTCAGTTGAACCATTCAAACTAGATTGAGGTAAGGTTCCATGATCAGTAACACTCGTACCTTCCAACAAAGGAGTCTGATCATCACCAGAAGTAACGCATCCAGGATCAAGTGTTTGATTCTGTAACAATCTTCCGTCTTTTGGCTGATCTGTTTCTCCAGTAGGGATGGCATCTTCATTGCTTTTGCTGTTTTGTGACATTTTTTTATCCGAGGAATCAGCTTGGACCATTTCTTGGTCATTATACACCTGATCACTAAACTTTTCATCACTGAATAGCCTAGCCCTTAAACTTTGGCCAATTACAGGCAAAGTGATGGTGGCCTTGAAACTCTGTCGTGCAGGGGTAGGCCCCCCTGCAATTGTTGAAGTTAATTTTGATATTCCAACATTACCAATACCTGCATGATTGATGACACTTTTATTGCCTGAATCATGAGTGCCTGACTCACTGTTTAATTCGGTGGATCCAACCAATCTGATGATTTCCACAGGCCTAGGAATAGTATGGAAAGTCCATAATCCAACACTAGCTCCACAAAGCCGGCAATCCAAAACAACAGAATTAGGCTGCGATTGCAATTCACTTGAAAGCTCAGCAATTCTATTTCCAGCTACATTTTCTTTGGTGGTAGTAGTGAAGAGACTGACTGTAGGGCGTGAATCAAAAGTGGTGGATTTCTTGAGAGATTGATCTGACGCTCCGGACTTGCAGTCAACTACATAGGGCAGTGAACGGGGTTCCCATCCAAACAAGCTAATTAGCT ATGTTGCGAACCCCCAAATTTCTTCATTCCCCAAACCTTTCTTCTCAAACCCAAACCCAAACCCAAACCCAAAACATCCCCACTTCTTCAAAATTTCCATTCATCAAACAATGTTGCAAAATCTCCCGCCGGAATCTCACCATTGGAACCAATTCCCTCTTACTTCTTCTCTTTAACTCTCAAATTCAAGACCCATTTTTAATGTCCTCCAAAGCAGAGGTTGAAGAAGAAGAATTACAGAGTCCTAAAAATGATGACTTTCTTTGCACTGGAAAGATCCCTACGAAACGTGCATTTCTTGATATCTCCATTGATGGAGTTCCTGCTGGTCGCATTATCATTGGCCTTTATGGCAATGATTCCCCAGCAGGAGTTGCAAGGTTTAGCAATCTTGTAAGCGGAGCTGCTGGCATTTCTTATAGAAGAAAAGACTTTGTAAAGATCACTTCAAATTATGTTCAACATAGTGGAGTTAGATCTTATGGTGTGGATTTTGAGCTTGCAAAGAGGAATGGGAATGAATTAGTATCTGAAACTCTTAAGGATGAATGGGAGAGAGCGAATGAGAAATGTTCTGGGACTAAGAATTTGGCTTCGACTGTGGGGATCATTGTGAGAGACCCTTTAAAACCACCTCCTAAGTTGAAGTTGGTAGCTAGGAAAGGGAAGCTGGAGGTTGATCAGGAACAGGTCGGTACCGAACCGAATGGGACGGAGTTCACGATATCGGTTAAGGATTCACCAGAGCTTGATGATTCAGCTTTGGTGATTGGAATTGTTTTGGATGGAATGGAAGTTGTGGAGAAGATTGCACAAGTGAAGACTGTTAAAGATAATACTACTTCTCCTTATTTCAGAGTCGCAAAGATAATAGGCGATAAAAGAGCTGTTGTTGCAGAAAGAGGGTTCAACCGTCCTTATTCTAAAGTGATTGTCACAAACTGTGGGTTGCTAGAGGAATGA ATGTTGCGAACCCCCAAATTTCTTCATTCCCCAAACCTTTCTTCTCAAACCCAAACCCAAACCCAAACCCAAAACATCCCCACTTCTTCAAAATTTCCATTCATCAAACAATGTTGCAAAATCTCCCGCCGGAATCTCACCATTGGAACCAATTCCCTCTTACTTCTTCTCTTTAACTCTCAAATTCAAGACCCATTTTTAATGTCCTCCAAAGCAGAGGTTGAAGAAGAAGAATTACAGAGTCCTAAAAATGATGACTTTCTTTGCACTGGAAAGATCCCTACGAAACGTGCATTTCTTGATATCTCCATTGATGGAGTTCCTGCTGGTCGCATTATCATTGGCCTTTATGGCAATGATTCCCCAGCAGGAGTTGCAAGGTTTAGCAATCTTGTAAGCGGAGCTGCTGGCATTTCTTATAGAAGAAAAGACTTTGTAAAGATCACTTCAAATTATGTTCAACATAGTGGAGTTAGATCTTATGGTGTGGATTTTGAGCTTGCAAAGAGGAATGGGAATGAATTAGTATCTGAAACTCTTAAGGATGAATGGGAGAGAGCGAATGAGAAATGTTCTGGGACTAAGAATTTGGCTTCGACTGTGGGGATCATTGTGAGAGACCCTTTAAAACCACCTCCTAAGTTGAAGTTGGTAGCTAGGAAAGGGAAGCTGGAGGTTGATCAGGAACAGGTCGGTACCGAACCGAATGGGACGGAGTTCACGATATCGGTTAAGGATTCACCAGAGCTTGATGATTCAGCTTTGGTGATTGGAATTGTTTTGGATGGAATGGAAGTTGTGGAGAAGATTGCACAAGTGAAGACTGTTAAAGATAATACTACTTCTCCTTATTTCAGAGTCGCAAAGATAATAGGCGATAAAAGAGCTGTTGTTGCAGAAAGAGGGTTCAACCGTCCTTATTCTAAAGTGATTGTCACAAACTGTGGGTTGCTAGAGGAATGA MLRTPKFLHSPNLSSQTQTQTQTQNIPTSSKFPFIKQCCKISRRNLTIGTNSLLLLLFNSQIQDPFLMSSKAEVEEEELQSPKNDDFLCTGKIPTKRAFLDISIDGVPAGRIIIGLYGNDSPAGVARFSNLVSGAAGISYRRKDFVKITSNYVQHSGVRSYGVDFELAKRNGNELVSETLKDEWERANEKCSGTKNLASTVGIIVRDPLKPPPKLKLVARKGKLEVDQEQVGTEPNGTEFTISVKDSPELDDSALVIGIVLDGMEVVEKIAQVKTVKDNTTSPYFRVAKIIGDKRAVVAERGFNRPYSKVIVTNCGLLEE
BLAST of CsaV3_1G006440 vs. NCBI nr
Match: XP_004137461.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Cucumis sativus] >KGN64101.1 hypothetical protein Csa_1G042130 [Cucumis sativus]) HSP 1 Score: 607.8 bits (1566), Expect = 2.1e-170 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. NCBI nr
Match: XP_008455852.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Cucumis melo]) HSP 1 Score: 595.1 bits (1533), Expect = 1.4e-166 Identity = 304/320 (95.00%), Postives = 307/320 (95.94%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. NCBI nr
Match: XP_022137579.1 (peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Momordica charantia]) HSP 1 Score: 491.5 bits (1264), Expect = 2.2e-135 Identity = 255/331 (77.04%), Postives = 281/331 (84.89%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. NCBI nr
Match: XP_022994144.1 (peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Cucurbita maxima]) HSP 1 Score: 483.0 bits (1242), Expect = 7.7e-133 Identity = 255/331 (77.04%), Postives = 273/331 (82.48%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. NCBI nr
Match: XP_022955280.1 (peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Cucurbita moschata]) HSP 1 Score: 474.9 bits (1221), Expect = 2.1e-130 Identity = 247/303 (81.52%), Postives = 263/303 (86.80%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TAIR10
Match: AT1G74070.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 330.1 bits (845), Expect = 1.5e-90 Identity = 176/287 (61.32%), Postives = 213/287 (74.22%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TAIR10
Match: AT5G13120.1 (cyclophilin 20-2) HSP 1 Score: 68.6 bits (166), Expect = 8.2e-12 Identity = 61/228 (26.75%), Postives = 93/228 (40.79%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TAIR10
Match: AT5G35100.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10 Identity = 59/223 (26.46%), Postives = 96/223 (43.05%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TAIR10
Match: AT3G55920.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 60.8 bits (146), Expect = 1.7e-09 Identity = 51/178 (28.65%), Postives = 75/178 (42.13%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TAIR10
Match: AT3G63400.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 56.2 bits (134), Expect = 4.2e-08 Identity = 52/188 (27.66%), Postives = 76/188 (40.43%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. Swiss-Prot
Match: sp|F4HTT6|CP26B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP26-2 PE=2 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 2.7e-89 Identity = 176/287 (61.32%), Postives = 213/287 (74.22%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. Swiss-Prot
Match: sp|Q9ASS6|PNSL5_ARATH (Photosynthetic NDH subunit of lumenal location 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL5 PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.5e-10 Identity = 61/228 (26.75%), Postives = 93/228 (40.79%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. Swiss-Prot
Match: sp|Q41651|CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba OX=3906 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.6e-09 Identity = 53/197 (26.90%), Postives = 83/197 (42.13%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. Swiss-Prot
Match: sp|O65220|CPY28_ARATH (Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP28 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.8e-09 Identity = 59/223 (26.46%), Postives = 96/223 (43.05%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. Swiss-Prot
Match: sp|Q54SM3|PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum OX=44689 GN=ppiA PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.8e-09 Identity = 51/195 (26.15%), Postives = 78/195 (40.00%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TrEMBL
Match: tr|A0A0A0LVP9|A0A0A0LVP9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042130 PE=4 SV=1) HSP 1 Score: 607.8 bits (1566), Expect = 1.4e-170 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TrEMBL
Match: tr|A0A1S3C2K6|A0A1S3C2K6_CUCME (peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495917 PE=4 SV=1) HSP 1 Score: 595.1 bits (1533), Expect = 9.2e-167 Identity = 304/320 (95.00%), Postives = 307/320 (95.94%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TrEMBL
Match: tr|A0A2N9HCL1|A0A2N9HCL1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39979 PE=4 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 1.8e-114 Identity = 218/332 (65.66%), Postives = 255/332 (76.81%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TrEMBL
Match: tr|A0A2P4INT3|A0A2P4INT3_QUESU (Peptidyl-prolyl cis-trans isomerase cyp26-2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_23675 PE=4 SV=1) HSP 1 Score: 419.5 bits (1077), Expect = 6.9e-114 Identity = 220/330 (66.67%), Postives = 253/330 (76.67%), Query Frame = 0
BLAST of CsaV3_1G006440 vs. TrEMBL
Match: tr|B9RE54|B9RE54_RICCO (Peptidyl-prolyl cis-trans isomerase B, ppib, putative OS=Ricinus communis OX=3988 GN=RCOM_1618430 PE=4 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 1.1e-108 Identity = 216/331 (65.26%), Postives = 248/331 (74.92%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |